Analysis (for NFR):
Protein Colouring and Representation:
Nfr1 is represented in cyan.
Nfr2 is represented in magenta.
Interacting Residues (Red and Yellow): Specific residues at the interaction interface are highlighted in red and yellow. Red residues might indicate a key interaction site or a specific domain of interest, while yellow residues mark the interacting surfaces between the two proteins.
Interaction Interface:
Surface Contact: The visualisation shows a significant surface contact area between Nfr1 and Nfr2, indicating a strong interaction interface. The yellow regions suggest the specific areas where the two proteins are making contact.
Key Interaction Sites: The red-highlighted residues on the cyan protein (Nfr1) may represent critical points of interaction, such as binding sites or functionally important regions. These residues likely play a crucial role in stabilising the interaction.
Overall Binding Mode:
The interaction appears to involve a large surface area, which is typical for protein-protein interactions. This extensive contact area often contributes to the stability and specificity of the interaction.
Structural Complementarity:
The surface representations of Nfr1 and Nfr2 fit together well, indicating good structural complementarity. This suggests that the docking model is reasonable and biologically relevant.
Red Residue in-depth look:
Residue Representation: Sticks Representation: The residues involved in the interaction are shown in sticks representation, coloured in red, indicating they are important interaction sites.
Analysis similar to this example was conducted for each complex ad results were recorded in the summary table.
For detailed analysis of each complex, you may go through the pdf file attached below.
