Overview
The spread of Inflammatory Bowel Disease (IBD) in Asian countries due to the adoption of Western dietary habits have become a severe healthcare problem in recent years1. Target therapies that turn off specific inflammation-causing genes have been proven as a major treatment in IBD2. In this project, a drug that interferes with Interleukin-18 is designed and tested to provide a new possible solution of IBD treatment IL-18 binding protein (IL-18BP) could bind to IL-18 to stop its function3 (Figure 1). In humans, while there are four types of IL-18BP (IL-18BPa, Pb, Pc, Pd), only IL-18BPa and IL-18BPc could antagonize IL-18 activity4,5. Plasmid containing IL-18 BP with SUMO for better stability, Fc for potential targeted drug delivery, and His tag for easier purification is constructed and tested, the protein is then expressed and purified through BL21 E.coli strands. The purified protein was validated using Western Blotting and its activity was confirmed through T cell activation inhibition experiments.

Figure 1. The IL18 signal pathway diagram3
1. Construction of Plasmid
1.1 Double enzyme digestion of pET-28a vector and PCR amplified the target gene
The PET-28α blank plasmid was cut by restriction enzymes to make them linear. Agarose gel electrophoresis was used to identify the restriction enzyme digestion product of the PET-28α blank plasmid. After the DNA was recovered from gel, the concentration and purity of the samples were then measured (Tab 1).
Tab 1. Concentration and purity of blank plasmid samples
Experimenter Concentration 260/280
Annie 135.4 µg/µL 1.7
Nicole 58 µg/µL 2.15
Gloria 69.2 µg/µL 1.94
Jonathan 26 µg/µL 2.13
Wells 79.4 µg/µL 2.12

The length of target genes SUMO-IL-18BPa-Fc and SUMO-IL-18BPc-F are 1542bp and 1641bp, respectively. Figure 2 A showed that the length of the target gene was consistent with the electrophoresis results, indicating that the target gene was successfully amplified. Agarose gel electrophoresis was used to identify the restriction enzyme digestion product of the PET-28α blank plasmid. Figure 2.B shows that the plasmid was successfully digested.

Fig 2 Identification of PCR amplified gene and enzyme digested pET-28α vector. A. PCR product of SUMO-IL-18BPa-Fc and SUMO-IL-18BPc-Fc
B. Enzyme digestion product of pET-28α vector
1.2 Construction and Extraction of Recombinant plasmids
After restriction enzyme digest and ligation of pET-28a with Sumo-IL-18BP-Pa-Fc and Sumo-IL-18BP-Pc-Fc , the recombinant plasmids were transformed into E.coli DH5α competent (Fig 3A and B). The transformants were then identified by colony PCR. The agarose gel electrophoresis results showed that we obtained the expected length of PCR products, indicating the construction were successfully completed (Fig3 C).

Fig 3. The transformants form colonies on solid LB medium and colony PCR amplification of IL-18-BPa and IL-18-BPc.
A.pET-28α-Sumo-IL-BP-18-BPa-Fc-DH5α colony B.pET-28α-Sumo-IL-BP-18-BPc-Fc-DH5α colony. C. Verification of presence of Pa and Pc gene in DH5a transformants
1.3 Plasmid extraction and sequencing
The correct clones were cultured in LB medium, then we extracted plasmids for sequencing. The concentration and purity of plasmids were also measured (Tab 2).
Tab 2. Concentration and purity of extracted recombinant plasmid samples
Sample Concentration 260/280
BPa (sample 1) 97.95 ng/µL over 2.1
BPa (sample 2) 144.2 ng/µL over 2.1
BPc (sample 1) 90.65 ng/µL over 2.1
BPc (sample 2) 126.6 ng/µL over 2.1
Then the plasmid pET-28a with Sumo-IL-18BP-Pa-Fc and Sumo-IL-18BP-Pc-Fc were sent to the biological company for sequencing. The comparison of the sequencing results showed that the target gene sequence was consistent with the sequencing results (Fig 4A and B ), indicating that the plasmid was successfully constructed.

Fig 4. Gene sequencing of IL-18-BPa and IL-18-BPc.A. Gene sequencing of IL-18BPa showed no mutation has occurred. B.. Gene sequencing of IL-18BPc showed no mutation has occurred
2. Protein Expression
2.1 protein induced expression
We transformed the correct recombinant plasmids into E.Coli BL21 competent cells to promote protein expression. The positive clones were selected out by kanamycin resistance in the solid LB medium.The BL21 colony cultures were expanded into large flasks for growth. After IPTG induction, the colonies were shaken overnight for protein production. The proteins were extracted then purified use the His tag.
At the same time, we transformed the pET28a-Sumo-IL10-Fc synthesized by the company into E.coli BL21 to promote protein expression as our subsequent positive control. In the fig 5 A, the agarose gel electrophoresis results showed that we obtained the expected length of sumo-IL10-Fc, indicating the construction were successfully completed. And the target gene sequence was consistent with the sequencing results(Fig. 5 B).

Fig 5. Gene sequencing and colony PCR amplification of sumo-IL10-Fc
2.2 Protein verification after purification
The purified IL18-BPa, IL18-BPc, and IL10-BP proteins were 56.9kDa, 61kDa, and 62.1kDa, respectively. The SDS-PAGE successfully verified the IL18-BPa, IL18-BPc, and IL10 proteins extracted and purified from E. coli BL21 (Fig 6).

Fig 6. SDS-PAGE verification of extracted proteins.
A, pET-28α-Sumo-IL-BP-18-BPa is yellow box, pET-28α-Sumo-IL-BP-18-BPc is red box, pET-28α-Sumo-IL-10 is blue box.
2.3 Western Blot verification of extracted protein
Compared to coomassie Brilliant Blue staining, the principle of Western detection is antibody antigen specific reaction, with high detection specificity. The proteins we expressed all carrying His tag, and specific His antibodies can be used to detect purified proteins. As shown in Figure 7, the protein size we obtained is consistent with the expected size, demonstrating successful protein expression.

Fig 7. Detection of recombination protein expression by western blot. From left to right: pET-28α-Sumo-IL-10, pET-28α-Sumo-IL-BP-18-BPa is yellow box, pET-28α-Sumo-IL-BP-18-BPc. The size of Sumo-IL-18BPa-Fc is about 56.9 kDa; the size of Sumo-IL-18BPc-Fc is 61 kDa.the size of Sumo-IL-10-Fc is 62.1 kDa.
2.3 Use BCA colorimetric method to determine the protein concentration
The concentration of the samples was measured using the BCA calorimetric method. We use standard concentration protein solution and BCA colorimetric method to determine the protein concentration. The absorbance value was measured by the enzyme-linked immunosorbent assay (ELISA) reader. We draw a scatter plot, insert a standard curve, and calculate the R-squared value.In the Fig.8, the fitting coefficient is greater than 0.99, indicating that the fitting effect is perfect.

Fig 8. Protein quantification using BCA colorimetric method.
The protein concentrations of Sumo-IL-18-BPa-Fc, Sumo-IL-18-BPc-Fc and Sumo-IL-10-Fc were calculated according to the standard curve, as shown in Tab 3.
Tab. 3 The concentrations of Sumo-IL-18-BPa-Fc, Sumo-IL-18-BPc-Fc and Sumo-IL-10-Fc protein
Sample Concentration
Sumo-IL-18-BPa-Fc 2.649213 μg/mL
Sumo-IL-18-BPc-Fc 2.451683 μg/mL
Sumo-IL-10-Fc 2.5152 μg/mL
3. Verification of Protein Function
3.1 Measuring the standard curve using an INF-γ standard.
In the experiment, we need the concentration of INF-γ, and we establish the standard curve of INF-γ.The R squared value is larger than 0.99, which indicates that the curve is accurate (Fig. 9 ).

Fig 9 INF-γ quantification using ELISA.
3.2 The influence of dose and storage conditions on protein activity
Store the three proteins (Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc and Sumo-IL-10) at different temperatures (-80, -20, 4, 37 ℃) for 24 hours and incubate them with mouse primary T lymphocytes. Stimulate the cells with IL-18 and detect the IFN-γ in the cell supernatant.
In Figure 10, the concentration of IFN-γ gradually decreased with the increase of Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc and Sumo-IL-10 protein concentrations. It illustrates the inhibitory effect of recombinant Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc and Sumo-IL-10 proteins on IFN-γ production.
The results are showed in Fig 10,the activity of protein is affected by temperature. The inhibitory effect of Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc and Sumo-IL-10 on IFN-γwas not affected after 24 hours at -80 °C. After 24 hours at -20 °C and 4 °C, the inhibitory effect of Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc and Sumo-IL-10 proteins on IFN-γ decreased. After 24 hours at -37°C, the inhibitory effect of Sumo-IL-BP-18-BPc, Sumo-IL-BP-18-BPa and Sumo-IL-10 protein on IFN-γ was significantly decreased. Storing at low-temperature preservation is beneficial for the stability of recombinant proteins. Furthermore, the anti-inflammatory effect of recombinant proteins is dose-dependent.

Fig 10 The influence of dose and storage temperature on protein activity. Sumo-IL-BP-18-BPa, Sumo-IL-BP-18-BPc, and Sumo-IL-10A protein were stored at different temperatures, then were incubated with cells to determine the concentration of IFN γ in the cell supernatant.
In the fig 11, it can be seen that after storage at 4°C for 24 hours, IL-18BPc's effects are still comparable to that of IL-10 in the 2.0 ug/ml, while IL-18BPa is less stable.

Fig 11 The protein activity at 4°C. Ratio of IFN-gamma production levels after protein treatment vs control for IL-10 (B), IL-18BPa (C), IL-18BPc
Reference
  • Seyedian, S.S., Nokhostin, F. & Malamir, M.D. A review of the diagnosis, prevention, and treatment methods of inflammatory bowel disease. J Med Life 12, 113-122 (2019).
  • Peyrin-Biroulet, L., et al. Selecting Therapeutic Targets in Inflammatory Bowel Disease (STRIDE): Determining Therapeutic Goals for Treat-to-Target. American Journal of Gastroenterology 110, 1324-1338 (2015).
  • Dou, X., Qiao, L., Chang, J., Yan, S., Song, X., Chen, Y., Xu, Q., & Xu, C. (2021). Lactobacillus casei ATCC 393 and it's metabolites alleviate dextran sulphate sodium-induced ulcerative colitis in mice through the NLRP3-(Caspase-1)/IL-1β pathway. Food & function, 12(23), 12022–12035.https://doi.org/10.1039/d1fo02405a
  • Zhou, T., et al. IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy. Nature 583, 609-614 (2020).
  • Harel, M., Fauteux-Daniel, S., Girard-Guyonvarc'h, C. & Gabay, C. Balance between Interleukin-18 and Interleukin-18 binding protein in auto-inflammatory diseases. Cytokine 150, 155781 (2022).