Experiment
LIRA
The Loop-Initiated RNA Activator (LIRA) is a novel RNA detection
technology based on RNA secondary structure. When the target RNA of LIRA
is present, it binds to the LIRA recognition region, disrupting the
stem-loop structure of LIRA and exposing the RBS and AUG, thereby
initiating the translation of downstream reporter genes. If other iGEM
teams need to detect certain RNAs, they can solve this problem with
LIRA. Our project has provided the method of design LIRA
Model,
construction of relevant plasmid
Parts
and usage of cell-free system
Results.
Parts
The parts are the core of iGEM competition. We have designed many new
basic parts and assembled many new composite parts. To verify its
function, we have conducted a variety of experiments. iGEM works to
enhance standardization in synthetic biology. To achieve this goal, iGEM
builds “Registry”. We have added information related to our new parts,
including information from our own wet lab and model work particularly,
to Registry so that other iGEM team can get to know our new parts
easily. If you want to know more, please go to
Parts.
Model
Bioinformatic Analysis
Our team has used a comprehensive pipeline that includes a variety of
bioinformatics and experimental methods to enhance the accuracy of
target miRNA identification, providing valuable insights in biomarker
screening for similar iGEM projects.
LIRA design and optimization
The performance of the LIRA detection is strongly connected with the
stability of the LIRA structure. Hence, we established lock/unlock
metrics to simulate the stability of the double-arm LIRA secondary
structure and introduced Random Forest to explore indicators for
optimizing LIRA performance.
LIRA kinetic simulation
We conducted kinetic simulations of the LIRA expression system,
considering the interactions among various complexes during the reaction
process. This provides a reference for understanding how the LIRA system
responds to specific inputs and regulates gene expression.
Human practices
Public participation
Inspired by the 2024 Paris Olympic Games, we organized a series of
sports activities to effectively raise public awareness about the
importance of early cancer screening and cardiovascular health. These
activities were designed to be both engaging and highly participatory,
which not only enhanced our social impact but also significantly
increased the public’s awareness and interest in health management. This
approach serves as an excellent model for other iGEM teams to adopt or
adapt, enabling them to make a positive global impact through innovative
and interactive methods.
Ethics and social responsibility
During the implementation of Human Practice, we emphasized the ethical
considerations of the project and highlighted the ethical
responsibilities in every stage of the project. We collaborated with
several teams to co-author the "Ethics of Synthetic Biology" handbook,
providing other iGEM teams with a comprehensive and standardized ethical
framework. This handbook may help them better understand and adhere to
ethical principles in their project design and implementation.
Business
To ensure the sustainable development of the project, we have developed
a comprehensive entrepreneurship section, covering market analysis,
financial forecasts, and marketing strategies, etc. Additionally, we
have prepared a detailed business plan for Heartecho. This not only lays
a solid commercial foundation for the future of the project but also
serves as a model for other iGEM teams on how to combine scientific
research with commercialization, further promoting the entrepreneurial
spirit within the iGEM competition.
Education
Activity Planning Template
Before each human practices or education activity, we conducted thorough
preparations. We have implemented standardized planning procedures and
designed a comprehensive activity planning template. This template
covers various aspects such as the background and purpose of the
activity, activity theme, target audience, and so on, aiming to provide
a comprehensive framework for activity design. We sincerely invite other
iGEM teams to adopt this template to help them plan.
Educational Activity Feedback Form
To achieve effective communication with participants, we have carefully
designed an educational activity feedback form. The form covers a wide
range of topics, including opinions and suggestions on educational
activities, whether the activities promote the understanding of
synthetic biology, and whether the activities are interesting. After
each activity, we encouraged participants to fill out this form, and
their valuable feedback is extremely helpful for our continuous
improvement.
SYNO Cards
Combining education with entertainment is one of our core concepts. We
innovatively integrated popular science knowledge of synthetic biology
with UNO cards. We have replaced the names on the cards with important
terminology from synthetic biology, such as " chassis "and " reporter
gene ", thereby designing a completely new set of SYNO cards. Each card
contains relevant knowledge of synthetic biology, aiming to allow
players to gain knowledge while having fun. To facilitate usage, we have
made PDF files of the cards available on the education page for free
download by anyone.
"My Little Octopus" and "RevPipes"
Electronic games have a broad participant and are excellent educational
carriers for promoting synthetic biology. This year, we have launched
two educational games: "My Little Octopus" and "RevPipes". Both games
promote knowledge of synthetic biology through fun and engaging
experiences. We have attached the game codes on the Education page.
Other iGEM teams can also personalize the design based on this to create
more innovative educational games.
Four Handbooks
We also compiled four handbooks, namely “Protocol Handbook”, “Ethics in
Synthetic Biology”, “Synthetic Biology: The ‘LEGO’ of Biology”, and “Ten
Scientific and Practical Tips for Cancer Prevention”. These handbooks
cover basic knowledge of synthetic biology, experimental operation
guides, ethical considerations, and related knowledge of scientific
cancer prevention, aiming to provide comprehensive and in-depth learning
resources for readers. We encourage other iGEM teams to refer to and
draw inspiration from the content of these manuals to further enrich and
improve their educational materials and scientific research projects.
Picture Book - "Invisible Bacteria"
To popularize microbiological knowledge to children in a more engaging
and lively way, we created the picture book "Invisible Bacteria".
Through interesting illustrations and storylines, we hope to help
children exploring the wonderful world of microorganisms and cultivate
their scientific literacy and curiosity. We welcome other iGEM teams to
adapt and innovate based on this, creating more popular science picture
books suitable for readers from different age groups, and jointly
promoting the popularization and dissemination of synthetic biology
knowledge.
Wiki
A Web development tool
When writing a wiki, we need to handle materials consisting of text,
images, tables, and other elements, and add corresponding HTML tags and
CSS selectors for them. To reduce the workload of this process, we used
HTML+CSS+JS to write a webpage as our tool. The main function of this
webpage is to wrap the imported text and add specified tags and
selectors. In addition, it can quickly insert images, generate tables,
and customize code blocks for insertion. To get the corresponding files
and documents, please contact us in e-mail.