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OUTLINE

Overview

Cycle0: Plasmid Design

Design

    The plasmid introduced into the cyanobacteria was obtained from the ShanghaiTech_China 2022 team. They constructed a plasmid containing the Sucrose permease (cscB) gene, which can integrate into the cyanobacterial genome. We expressed this plasmid in S. elongatus. For more information, please check the ShanghaiTech_China 2022 website at Engineering Success | ShanghaiTech_China - iGEM 2022

Cycle1: Culturing

Design

    We decided to cultivate the cyanobacteria using BG11 liquid medium, inoculating the strains at a ratio of 100:1. The cultures were maintained at room temperature under natural light conditions. The optical density at 750 nm (OD750) was measured daily using a spectrophotometer to plot the growth curve.

Build

    Room temperature under natural light

Test

    the cyanobacteria entered the logarithmic phase on day 15 and reached the stationary phase on day 27.

Learn

Cycle2: Stain Transformation

Design

    We reviewed literature to obtain the cscB gene sequence for sucrose secretion and had a plasmid with regulatory elements synthesized.

Build

    We cultured 1.5 ml of cyanobacteria (OD750 = 0.5), centrifuged, resuspended in BG11 medium, and added plasmid (≥1 ng/μl). The mixture was incubated at 30°C for 24 hours.

Test

    After 24 hours, we spread the culture on BG11 agar plates with antibiotics and incubated until single colonies appeared, confirming successful transformation.

Learn

    We identified transformed colonies using antibiotic selection, measured sucrose production, and adjusted conditions to optimize cscB expression, documenting the process throughout.

Cycle3: Expression Validation

Design

    We selected engineered PCC7942 strains for cscB gene expression experiments, planned their cultivation in BG11 medium with ampicillin, and prepared the necessary equipment and reagents, including a sucrose assay kit.

Build

    Single colonies from antibiotic-resistant plates were inoculated into BG11 medium with ampicillin and cultured for seven days until OD685 reached 0.5 to ensure sufficient growth and gene expression.

Test

    50 ml cultures of wild-type and engineered PCC7942 were centrifuged, resuspended in BG11 medium, and sucrose levels were measured every 24 hours for 72 hours using a sucrose assay kit. Intracellular sucrose was also measured with additional freeze-thawing, ultrasonication, and extraction steps.

Learn

    Data was analyzed to evaluate cscB gene expression and sucrose production. Based on results, adjustments to the expression system or conditions were made to improve future experiments.

References

  • Atsushi Kouzuma, Molecular mechanisms regulating the catabolic and electrochemical activities of Shewanella oneidensis MR-1, Bioscience, Biotechnology, and Biochemistry, Volume 85, Issue 7, July 2021, Pages 1572-1581, https://doi.org/10.1093/bbb/zbab088
  • Kasai, T., et al., Overexpression of the adenylate cyclase gene cyaC facilitates current generation by Shewanella oneidensis in bioelectrochemical systems. Bioelectrochemistry, 2019. 129: p. 100-105.
  • Sun, W., et al., Promoting Extracellular Electron Transfer of Shewanella oneidensis MR-1 by Optimizing the Periplasmic Cytochrome c Network. Front Microbiol, 2021. 12: p. 727709.
  • Li, F., Li, YX., Cao, YX. et al. Modular engineering to increase intracellular NAD(H/+) promotes rate of extracellular electron transfer of Shewanella oneidensis. Nat Commun 9, 3637 (2018). https://doi.org/10.1038/s41467-018-05995-8
  • Li, F., Li, Y. X., Cao, Y. X., Wang, L., Liu, C. G., Shi, L., & Song, H. (2018). Modular engineering to increase intracellular NAD(H/+) promotes rate of extracellular electron transfer of Shewanella oneidensis. Nature communications, 9(1), 3637. https://doi.org/10.1038/s41467-018-05995-8
  • Cao, Y., Song, M., Li, F., Li, C., Lin, X., Chen, Y., Chen, Y., Xu, J., Ding, Q., & Song, H. (2019). A Synthetic Plasmid Toolkit for Shewanella oneidensis MR-1. Frontiers in microbiology, 10, 410. https://doi.org/10.3389/fmicb.2019.00410
  • AHUT_China iGEM Team. (2018). Part: BBa_K2547003. Retrieved from https://parts.igem.org/Part:BBa_K2547003
  • Cao, Y., Song, M., Li, F., Li, C., Lin, X., Chen, Y., Chen, Y., Xu, J., Ding, Q., & Song, H. (2019). A synthetic plasmid toolkit for Shewanella oneidensis MR-1. Frontiers in Microbiology, 10, 410. https://doi.org/10.3389/fmicb.2019.00410
  • Delgado, V. P., Paquete, C. M., Sturm, G., & Gescher, J. (2019). Improvement of the electron transfer rate in Shewanella oneidensis MR-1 using a tailored periplasmic protein composition. Bioelectrochemistry (Amsterdam, Netherlands), 129, 18-25. https://doi.org/10.1016/j.bioelechem.2019.04.022
  • Li, F., Li, Y. X., Cao, Y. X., Wang, L., Liu, C. G., Shi, L., & Song, H. (2018). Modular engineering to increase intracellular NAD(H/+) promotes rate of extracellular electron transfer of Shewanella oneidensis. Nature Communications, 9(1), 3637. https://doi.org/10.1038/s41467-018-05995-8
  • iGEM06_MIT. (2008). Part: BBa_B0029. Retrieved from https://parts.igem.org/Part:BBa_B0029
  • iGEM22_ShanghaiTech_China. (2022). Part: BBa_K4115045. Retrieved from https://parts.igem.org/Part:BBa_K4115045
  • SCUT-China iGEM Team. (2023). Part: BBa_K4621004. Retrieved from https://parts.igem.org/Part:BBa_K4621004
  • Watanabe, T., Suzuki, K., Oyanagi, W., Ohnishi, K., & Tanaka, H. (1990). Gene cloning of chitinase A1 from Bacillus circulans WL-12 revealed its evolutionary relationship to Serratia chitinase and to the type III homology units of fibronectin. Journal of Bacteriology, 172(1), 401-409. https://doi.org/10.1128/jb.172.1.401-409.1990
  • Weiss, R. (n.d.). Part: BBa_B0030. Retrieved from https://parts.igem.org/Part:BBa_B0030