Introduction
Our team aimed to shape our project based on societal and clinical needs, incorporating insights from various experts and stakeholders throughout our iGEM journey. Initially, we set out to address the sepsis burden in the Indian subcontinent. We created resources for our proposed end users and conducted interviews to understand how our project could have the greatest impact. Read through this page to see how through these interviews and human practices, our project evolved significantly and our focus shifted multiple times.
SepScan Workshop at Guru Nanak Higher Secondary School, Ranchi, India
The team hosted a workshop at a school in India, to allow these students to engage in synbio and to raise awareness around sepsis and our project. See our Education page for more info!
Handbook
As part of our Minimum Viable Product, the team decided to incorporate the feedback of both the stakeholders we spoke to and those who attended our educational events, and create a handbook that would come with our product. This handbook includes information on the ingredients device, how the device works and guidance on usage. See our Entrepreneurship page for more info!
- Interviews Summary
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Adam Howes
CDC, Data Science within the Predict division, Center for Forecasting and Outbreak Analytics In the early ideation phase, we spoke with Adam Howes, who had experience working on sepsis projects. He recommended exploring organizations like Charity Entrepreneurship, which focus on identifying neglected areas for effective solutions. This conversation sparked the creation of our project concept, SepScan, as we began exploring neglected medical areas that could benefit from innovative diagnostics.
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Dr. Michael R. Thomas
Lecturer in Bionanotechnology and Biochemical Engineering
London Centre for NanotechnologyInitially, our team wanted to use a multi biomarker approach, and based on the team's research we believed a microPAD would be the preferred method. We reached out to Dr. Michael Thomas who has worked with paper based assays in the past. Michael guided us on the technical aspects of diagnostic tools, particularly the comparison between microPADs and lateral flow assays (LFA). He advised us on selecting biomarkers, the use of polyclonal antibodies, and optimizing sensitivity in our designs.After the first meeting, we realised that we could use lateral flow assay, to achieve our goal
Beyond this initial meeting, Michael has provided ongoing support throughout the project, advising us on our approach to both synthetic biology and the development of LFAs, ensuring our project’s feasibility.Dr. Michael R. Thomas -
Prof. Mervyn Singer
Professor of Intensive Care Medicine
University College LondonIn order to evaluate the need and feasibility of our diagnostic tool, and to narrow down our biomarker selection we met with Mervyn Singer, a professor of intensive care at UCL and former co-chair of the Sepsis-3 Definitions International Task Force. Our team was focusing on diagnosing sepsis broadly, using a range of different sepsis biomarkers. Prof. Mervyn Singer played a critical role in refining our biomarker selection. He highlighted the limitations of our original choices (CRP, PCT, IL-6, CD64) for diagnosing sepsis, suggesting a more specific biomarker—sTREM-1—due to its minimal presence in non-septic patients. As we began researching sTREM-1we began to consider a focus on urosepsis.
In our follow-up interview Mervyn Singer challenged us on our unique selling point, particularly considering the role of Cys C. He also introduced to us the concepts of prognosis diagnosis, theranosis.Prof. Mervyn Singer -
Dr. Inderpal Kaur Bal, MD
Chief Medical Executive
Residency; UCSF 2004We interviewed Dr. Inderpal Kaur Bal for her vast expertise in emergency care and sepsis management, knowing her insights would be instrumental in understanding how sepsis is diagnosed and treated in real-world, time-sensitive settings. She stressed the importance of treating sepsis immediately based on symptoms like high fever, low blood pressure, and poor oxygenation, without waiting for lab results. In outpatient settings, such patients are sent directly to the emergency department (ED), but in resource-limited areas, where ED access is limited, a point-of-care (POC) test would be less effective if treatment cannot begin immediately. Her feedback made us reconsider the role of a POC test for sepsis, leading to a shift in focus toward preventing UTI progression to urosepsis, a more feasible clinical issue.
In our follow up interview, after shifting our focus to urosepsis, Dr. Inderpal Kaur Bal helped us come up with scenarios where a product like this might come in handy. This was after we changed the direction of our project from diagnosing sepsis to a point-of-care test to predict if a UTI can progress into urosepsis. She walked us through a hypothetical case of UTI in a resource-poor setting, where a test like this could help avoid clinical complications later and help with diagnosis and treatment.Dr. Inderpal Kaur Bal, MD -
Dr. Inderpreet Kaur Bal- Deol, MD
PGY 1 Internal Medicine, UC Davis
MD; UCSFDr. Inderpreet Kaur Bal-Deol was chosen for her experience in internal medicine, particularly in handling patients with a high risk of infections like sepsis. Her feedback highlighted that sepsis treatment often begins based on clinical suspicion rather than waiting for test results, reinforcing the need to shift our focus from diagnosis to prevention. Her insights directly influenced the project's redirection towards predicting the progression of UTIs to urosepsis. Her knowledge in internal medicine was also leveraged into understanding the benefits of looking into cystatin c detection in general thus, helping us understand the relevance of our research.
We decided to conduct a follow-up interview with Dr. Inderpreet Kaur Bal- Deol in order to assess if the new focus was a better idea. In the second interview, the clinician expressed support for the project's direction, particularly the development of a faster assay or test for Cystatin C, a marker specific to kidney function. The current Cystatin C test is significantly more expensive than the current Creatinine test and takes several days to return results because only a few labs run them. A faster, in-house test for Cystatin C could significantly benefit clinical practice and be cost-effective, potentially leading to widespread use.Dr. Inderpreet Kaur Bal- Deol, MD -
Apeet Hundal
MD; Internal Medicine
Associate; UC Davis California Internal medicineDr. Apeet Hundal’s frequent encounters with UTI cases in her internal medicine practice made her an ideal candidate to assess the potential of our diagnostic tool in outpatient settings. She provided practical insights into how the POC test could aid in early intervention for UTI patients, particularly those at risk of developing urosepsis. Her real-world experience with elderly and high-risk patients reinforced the importance of a test that could offer immediate results and improve clinical outcomes. She believes the test could be a valuable addition to outpatient care settings, particularly since culture results typically take 2-3 days to return. Having immediate test results would allow for the prompt initiation of broad-spectrum antibiotics and close follow-up care, which is often lacking in UTI management.
However, she also identified several barriers to implementation, including cost, insurance coverage, and the need for the test to be available in the clinic rather than the lab. Additionally, she helped us understand the sample collection process, questioning whether the test requires a clean urine sample and how different collection methods might affect the results. Drawing on her experience in the medical field in India, she believes the test could prove particularly useful in that context. Finally, she emphasized the test's potential to save lives, especially among elderly patients.Apeet Hundal -
Parminder Deol
MD; JIoPG Medical Education, India
Residency; Yale New Haven Hospital
Neuroradiologist; Dignity Health Medical Foundation; Mercy Medical GroupDr. Parminder Deol provided a valuable external perspective from his experience in clinical settings in India, offering a broad view of healthcare challenges, particularly in resource-limited settings. His insights on the scalability and usability of the test, especially in rural India, helped us understand the logistical and economic barriers to implementing our POC test. His feedback also emphasized the importance of tailoring the test for specific populations, such as the elderly or immunocompromised, to maximize its impact in high-risk groups.
He acknowledged the possibility of using the test at home but emphasized that its effectiveness would depend on factors such as cost and user-friendliness. The involvement of electronics may pose a challenge for older individuals who are not technologically adept, making hospital settings a more practical application. In low-resource settings, he pointed out the requirement for a phone or a pre-installed app to provide a readout. He stressed the importance of proper documentation and assistance, particularly if the person administering the test is disoriented. He suggested that an ideal solution would be an app that could automatically notify a clinician or flag emergency services if necessary. However, he noted that by the time such measures are needed, the patient is often already in the hospital.
He also mentioned that Cystatin C levels rise early, before the onset of urosepsis, indicating that this marker could be used to predict the likelihood of urosepsis early in a UTI case, potentially preventing the condition from becoming critical. Regarding product-market fit, he advised focusing on labs and pathologists as key stakeholders, particularly in the Indian context.Parminder Deol -
Karim Amer
Pfizer
MBA; London Business School, Columbia Business School
MD; Imperial College LondonWe approached Karim Amer as we were looking for guidance from someone with extensive business experience, and as he was already mentoring one of our team members, we reached out to him. Karim gave us a deep insight into what other contexts we need to investigate for our product to have real-world benefits. Some key factors were stability in high temperatures, denaturing, expiration dates and transport system. We discussed bringing the product to market and he helped us evaluate the value proposition of our product. Enthusiastic about the promise the product holds, he has agreed to join our board of advisors.
His ongoing mentorship included teaching us about shareholder agreements and registering our company, and he introduced us to Michael Dove for further business development.Karim Amer -
Will Saunter
Co-Founder and Biosecurity Lead at BlueDot Impact Through our fundraising and entrepreneurship activities, we reached Will Saunter. Will Saunter advised us on commercialization and agreed to join our advisory board. Through our conversation we secured sponsorship for our project through BlueDot Impact’s BioSecurity Fundamentals initiative, providing both financial and strategic support.
Will Saunter -
Bethan Wolfenden
Founder of Bento Bioworks
Previous iGEMerIn preparation for our Festival of Engineering event, wereached out to Bethan Wolfenden to explore using the Bento Lab as an educational tool. However, our conversation soon expanded beyond this, as she shared her experiences as an iGEM participant and the journey of founding Bento Labs. Her insights into entrepreneurship and starting a company inspired us to pursue the iGEM Entrepreneurship Special Prize.
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Mark Ong
Consultant
Histopathologist at Guy's and St Thomas' NHS Foundation TrustWe interviewed Mark Ong for his expertise in diagnostics and pathology, particularly in assessing the sensitivity and specificity of diagnostic tools. His insights into the UK’s healthcare system and diagnostic workflows helped us fine-tune the test’s applicability, identifying patient groups that could benefit most from early detection of UTI progression. His feedback also helped shape our understanding of how this test could be integrated into clinical practice and which settings would be most suitable for its use.
Additionally, they pointed out that the test could be particularly valuable in resource-poor areas, such as in India, where patients may not be able to return for follow-up visits. In these settings, the test could help rule out the possibility of disease progression during the initial visit, making it a potentially life-saving tool. -
Alya Masoude
Director of iGEM Start-ups
Previous iGEMerOnce we decided we were aiming for the Entrepreneurship Special Prize, we reached Alya Masoud who gave us an introduction to Entrepreneurship at iGEM. We had a discussion regarding iGEM Start-ups, with Alya advising us on the steps to build a business plan and the types of experts we might want to speak to. Her suggestions helped us better understand the legal and business aspects of our project. She also recommended us to reach out to Sara Holland for deeper insights into patentability and legal considerations.
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Michael Dove
CEO at Inoviv
Targeted ProteomicsThrough an introduction from Karim Amer, Michael Dove helped us plan for continuity post-iGEM. We discussed team attrition, fundraising, and London’s innovation ecosystem. His insights provided clarity on maintaining team motivation and securing financial backing for long-term success.
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Lauren Lowe
Account Manager at Protein Tech We reached out to Protein Tech, in hopes to receive logistics support. Thus, we meant Lauren Lowe, with whom we had conversations regarding the gender inequity in diagnostics and healthcare. She talked to us about how studies show, that women are often times likely and appropriate treatment for their pain particularly UTI’s, and the societal background of women’s pain often being underestimated and underappreciated. We concluded from the conversation that achieving health equity requires a shift in the systems approach to women’s symptoms. We later aimed to incorporate this into our Women in Stem event.
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David Wilson
Chief Commercial Officer of Avacta
Expert in DiagnosticsOur team seeked to reach out to someone with extensive expertise in the diagnostics field. We reached out to David Wilson to seek his guidance. He offered insights into the diagnostic market, taught us about enterprise fundamentals, and helped refine our minimum viable product (MVP). His advice on thinking about manufacturers and distribution networks was essential for our commercialization plan.
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Sara Holland
Patent Attorney
Mentor at iGEM Start-UpsFollowing our conversation with Alya Masoud, we reached out to Sara Holland for her guidance regarding the legal aspects of starting a business. She introduced to us the idea of an inventive step and non-obviousness. We discussed the criteria for patentability, and the discussion laid the foundation for our patent strategy and guide.
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Ahmed Sidali
Account Manager at Promega We reached out to Promega as we are using their NanoLuc®️ in our project. We discussed with Ahmed Sidali the potential for a collaborative relationship where promega would help us with the various protocols we need to use for experimentation. We also discussed potential sponsorship.
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Anthony Walker
Managing Partner at Alacrita Consulting Anthony Walker, a life sciences consultant, provided guidance on navigating the biotech sector and securing financial support. He recommended we seek more experts in diagnostics, leading us to connect with David Wilson. His firm Alacrita Consulting also provided a monetary gift to support our project.
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Jenny Zhan & James Richards
Investors at Entrepreneur First Jenny reached out through LinkedIn to one of our members to talk about SepScan, she connected us to James Richards. They provided guidance on start-up strategy and marketing, with a focus on targeted ambition. They recommended we conduct impact calculations, estimating the potential lives saved by SepScan, and shared valuable insights on how to position our product for success in both the UK and the US markets.
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Digby Usher
Co-Founder of Life Fabs Our team met Digby, who introduced us to Life Fabs: an open access lab/workshop space, based around an interdisciplinary community allowing cross-pollination of ideas. Our team was interested in this space, and were curious to see if we could collaborate with Life Fabs to support the continuity of our project. Thus our team arranged a visit to their research space.
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Seema Singh
Secretary MAI
Indian NGO for Women EmpowermentOur team created a questionnaire to send to the NGO MAI (mother assisting innovation), to try gauge how cultural beliefs and values of our target users could influence the delivery of our intervention. We split the questionnaire into 5 sections. The first part was aimed at gaining a better understanding of the present situation within our target communities. The second part focused on collecting information about people’s access to healthcare. The third part was about gauging impact, focusing on the community roles that will be essential in our product delivery. The fourth section concerned ethical considerations and the last section asked for additional feedback. Expand to see the detailed interview questions.