Model Ensemble 1: Linear Regression

Variety name Total protein content /% Glutelin content /% Prolamine content /% Globulin content /% Lysine content /%
WT-2x(1) 7.57 2.18 0.44 1.92 0.31
WT-2x(2) 8.3 1.94 0.46 2.09 0.3
WT-2x(3) 8.4 2.15 0.47 2.01 0.32
WT-2x(4) 8.97 2.04 0.4 1.78 0.29
WT-2x(5) 9.13 2.37 0.37 2.19 0.31
WT-2x(6) 9.17 1.85 0.49 2.13 0.3
WT-4x(1) 10.61 3.54 0.49 2.49 0.29
WT-4x(2) 10.55 2.64 0.52 2.51 0.33
WT-4x(3) 11.61 2.77 0.48 2.18 0.36
WT-4x(4) 12.22 2.81 0.45 2.11 0.37
WT-4x(5) 12.45 2.61 0.42 2.68 0.40
WT-4x(6) 14.08 2.21 0.59 2.24 0.35
osglub1-4x(1) 10.65 3.53 0.53 2.4 0.34
osglub1-4x(2) 10.58 2.64 0.57 2.37 0.32
osglub1-4x(3) 11.59 2.76 0.52 2.23 0.33
osglub1-4x(4) 12.23 2.81 0.49 2.13 0.32
osglub1-4x(5) 12.46 2.61 0.46 2.56 0.31
osglub1-4x(6) 14.07 2.22 0.64 2.33 0.34
osglub1/osglb-4x(1) 13.05 2.50 0.62 0.05 0.39
osglub1/osglb-4x(2) 13.23 1.87 0.66 0.04 0.41
osglub1/osglb-4x(3) 14.15 1.96 0.61 0.03 0.40
osglub1/osglb-4x(4) 14.36 1.99 0.57 0.06 0.42
osglub1/osglb-4x(5) 14.89 1.85 0.53 0.07 0.38
osglub1/osglb-4x(6) 15.08 1.56 0.75 0.03 0.40

1.1 Linear Regression of Changes in Total Protein, Gluten, Alcohol-Soluble Protein, Globulin, and Lysine Content Before and After Doubling

1.2 OsGluB1 Linear Regression of Changes in Total Protein, Gluten, Alcohol-Soluble Protein, Globulin, and Lysine Content Before and After Mutation

1.3 OsGluB1/OsGlb Linear Regression of Changes in Total Protein, Gluten, Alcohol-Soluble Protein, Globulin, and Lysine Content Before and After Mutation

1.4 Predictive Comparison of Changes in Total Protein Content Before and After Doubling and Gene Editing

1.5 Predictive Comparison of Changes in Gluten Content Before and After Doubling and Gene Editing

1.6 Predictive Comparison of Changes in Alcohol-Soluble Protein Content Before and After Doubling and Gene Editing

1.7 Predictive Comparison of Changes in Globulin Content Before and After Doubling and Gene Editing

1.8 Predictive Comparison of Changes in Lysine Content Before and After Doubling and Gene Editing

Model accuracy (considering the concentration, significance and goodness of fit of the original data) and improved significance test (α =0.05)
Variety - Total Protein Variety - Glutelin Variety - Prolamine Variety - Globulin Variety - Lysine
First paragraph (polyploidization) The second segment (osglub1 mutation) The third segment (both osglub1 and osglb are mutated) First paragraph (polyploidization) The second segment (osglub1 mutation) The third segment (both osglub1 and osglb are mutated) First paragraph (polyploidization) The second segment (osglub1 mutation) The third segment (both osglub1 and osglb are mutated) First paragraph (polyploidization) The second segment (osglub1 mutation) The third segment (both osglub1 and osglb are mutated) First paragraph (polyploidization) The second segment (osglub1 mutation) The third segment (both osglub1 and osglb are mutated)
T-test: paired two sample (content of improvement sequence in this step) mean analysis Poisson correlation coefficient 0.862274114 0.999916807 0.923103475 0.873683966 -0.199857209 -0.5986107 0.881759617 0.999274682 0.998956606 0.958076122 -0.143809917 -0.947687765 0.920244098 -0.542139318 0.990721002
P (t<=t) one tailed 0.000690231024756173 (<0.01) 0.335089986659378 (>0.05) 0.000989151779754957 (<0.01) 0.00030753051043595 (<0.01) 0.5 (>0.05) 0.0000051485873642671 (<0.01) 0.0098672689997965 (<0.01) 0.0000282288311043399 (<0.01) 0.0000932871661442039 (<0.01) 0.0157779537244738 (<0.05) 0.344228544888002 (>0.05) 2.63004343672171e-06 (<0.01) 0.00371768700696175 (<0.01) 0.0320250740270976 (<0.05) 0.0035822936958629 (<0.01)
F-test two sample ANOVA (to prepare for the next t-test) P (f<=f) one tailed 0.061840102311957 (>0.05) 0.490229545293888 (>0.05) 0.176102716725459 (>0.05) 0.042323872868052 (<0.05) 0.488022077700087 (>0.05) 0.239757368280236 (>0.05) 0.287220640942428 (>0.05) 0.440003756859274 (>0.05) 0.347834034250312 (>0.05) 0.19530882719514 (>0.05) 0.19130366703838 (>0.05) 0.0000858277908973245 (<0.01) 0.00718242019246973 (<0.01) 0.0194917704950284 (<0.05) 0.0260907002285288 (<0.05)
T-test: two sample equal / heteroscedasticity hypothesis (to evaluate the significance of the difference in the content of improvement sequence in this step) P (t<=t) two tailed 0.000827401482597938 (<0.01) 0.989738281660783 (>0.05) 0.00604198967350708 (<0.01) 0.0101455895746064 (<0.05) 0.994810846434833 (>0.05) 0.00583507750656658 (<0.01) 0.010133803616988 (<0.05) 0.249195635126652 (>0.05) 0.00543013350300424 (<0.01) 0.0101401106876729 (<0.05) 0.77837278673196 (>0.05) 2.46115913592971e-07 (<0.01) 0.0296988118180533 (<0.05) 0.04636248597522 (<0.05) 0.0091720143500425 (<0.05)
Regression statistics - goodness of fit analysis (to evaluate the causal relationship between the improvement and content change in this step) Multiple R 0.961984213 0.99991555 0.931414707 0.935282517 0.999948408 0.935282517 0.973746336 0.918466367 0.960978441 0.670697327 0.910572177 0.996507557 0.667736145 0.940790155 0.940790155
R Square 0.925413626 0.999831107 0.867533356 0.918947087 0.999896818 0.918947087 0.924435591 0.9751141 0.937183703 0.649811202 0.900829142 0.993027312 0.64587156 0.916638367 0.916638367
Adjusted R Square 0.906767032 0.999788883 0.834416695 0.901316141 0.999871023 0.901316141 0.94687915 0.909262551 0.930902073 0.629792322 0.909087944 0.992330043 0.639045872 0.904202041 0.904202041
General comments Extremely excellent Excellent accuracy but poor significance Extremely excellent excellent Excellent accuracy but poor significance Extremely excellent excellent Excellent accuracy but poor significance Extremely excellent excellent Excellent accuracy but poor significance Extremely excellent excellent Excellent accuracy but poor significance Extremely excellent

Model Ensemble 2 Prediction of Protein Primary Structure (Highlighted in Yellow are Target Locus Genes)

2.1 Prediction of Primary Structure for Wild-Type Glutenin B1

Nucleotide Sequence of the Glutenin B1-Encoding Gene OsGluB1

1 aactagcttg gtctgtcttt gaactcacat caattagctt aagtttccat aagcaagtac
61 aaatagctat ggcgagttcc gttttctctc ggttttctat atacttttgt gttcttctat
121 tatgccatgg ttctatggcc cagctattta atcccagcac aaacccatgg catagtcctc
181 ggcaaggaag ttttagggag tgtagatttg atagactaca agcatttgaa ccacttcgga
241 aagtgaggtc agaagctggg gtgactgagt acttcgatga gaagaatgaa ttattccagt
301 gcacgggtac ttttgtgatc cgacgtgtca ttcagcctca aggccttttg gtacctcgat
361 acacaaatat tcctggcgtg gtctacatca tccaaggttt gtatcctaat aaatataatc
421 gagaactcta tcgatgcaac tagtagttat gatctccatg gtcaaattaa tgttgtatgt
481 accttatgtg aacattataa tttttaggga gaggttctat gggtttaacc ttccccggtt
541 gccctgcgac ttaccagcaa caattccaac aattttcatc tcaaggccaa agtcagagcc
601 aaaagtttag agatgagcac caaaagattc atcaatttag gcaaggagac attgttgcac
661 tcccagctgg tgttgcacat tggttctaca atgatggtga tgcacctatt gttgccgtat
721 atgtttatga cgtaaacaac aacgccaatc agcttgaacc taggcaaaag gtaatttttt
781 gaacaaatat ttccatcaaa gttgtaattt tctatgtttt tcatatgttc ttacaatgca
841 attcatagcg taaaacatta aatttttcat tgataaaaat ttcaggagtt cctattagcc
901 ggcaacaaca atcgggctca acaacaacaa gtatatggta gctcaattga gcaacactct
961 gggcaaaaca tattcagcgg atttggtgtt gagatgctaa gtgaggcttt aggcatcaac
1021 gcagtagcag caaagaggct acagagccaa aatgatcaaa gaggagagat catacatgtg
1081 aagaatggcc ttcaattgtt gaaaccgact ttgacacaac agcaagaaca agcacaagca
1141 caagatcaat atcaacaagt tcaatacagt gaacgacagc aaacatcttc tcgatggaac
1201 ggattggagg agaacttttg cacgatcaag gtgagagtaa acattgaaaa tcctagtcgt
1261 gctgattcat acaacccacg tgccggaagg ataacaagtg tcaatagtca gaagttcccc
1321 atccttaacc tcatccaaat gagcgctacc agagtaaacc tataccaggt atttattata
1381 gcaccgtttt gttctcttca ttttttttgg aagatctttg atttgttgct tatataacat
1441 tattctctac tgatttctac agaatgctat tctctcgccg ttctggaacg tcaatgctca
1501 tagtttggtc tatatgattc aagggcgatc tcgagttcaa gtcgttagta actttggaaa
1561 gactgtgttt gatggtgtcc ttcgcccagg acaattattg atcattccgc aacattatgc
1621 tgtcttgaag aaagcagagc gtgaaggatg ccaatatatc gcaatcaaga caaacgctaa
1681 cgccttcgtc agccaccttg cagggaaaaa ctcagtattc cgtgccttgc cagttgatgt
1741 agtcgctaat gcgtatcgca tctcaaggga gcaagcccga agcctcaaga acaacagggg
1801 agaagagcac ggtgccttca ctcctagatt tcaacaacaa tactacccag gattatcgaa
1861 tgagtccgaa agcgagacct cagagtaatg taattgagaa ctagtatcgg cgtagagtaa
1921 aataaaacac cacaagtatg acacttggtg gtgattctgt tcgatatcag tactaaataa
1981 aggttacaaa cttcttaatt ttccta

Amino Acid Sequence of Wild-Type Glutenin B1

MASSVFSRFSIYFCVLLLCHGSMAQLFNPSTNPWHSPRQGSFRECRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFRDEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHVKNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQTSSRWNGLEENFCTIKVRVNIENPSRADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVNAHSLVYMIQGRSRVQVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRALPVDVVANAYRISREQARSLKNNRGEEHGAFTPRFQQQYYPGLSNESESETSE

2.2 Prediction of Primary Structure for Mutant Glutenin B1

OsGluB1 Nucleotide Sequence of Gene Mutation
(Case 1 - Mutant 1: Deletion of One G, Frameshift Mutation)

1 aactagcttg gtctgtcttt gaactcacat caattagctt aagtttccat aagcaagtac
61 aaatagctat ggcgagttcc gttttctctc ggttttctat atacttttgt gttcttctat
121 tatgccatgg ttctatggcc cagctattta atcccagcac aaacccatgg catagtcctc
181 ggcaaggaag ttttagggag tgtagatttg atagactaca agcatttgaa ccacttcgga
241 aagtgaggtc agaagctggg gtgactgagt acttcgatga gaagaatgaa ttattccagt
301 gcacgggtac ttttgtgatc cgacgtgtca ttcagcctca aggccttttg gtacctcgat
361 acacaaatat tcctggcgtg gtctacatca tccaaggttt gtatcctaat aaatataatc
421 gagaactcta tcgatgcaac tagtagttat gatctccatg gtcaaattaa tgttgtatgt
481 accttatgtg aacattataa tttttaggga gaggttctat gggtttaacc ttccccgtt
541 gccctgcgac ttaccagcaa caattccaac aattttcatc tcaaggccaa agtcagagcc
601 aaaagtttag agatgagcac caaaagattc atcaatttag gcaaggagac attgttgcac
661 tcccagctgg tgttgcacat tggttctaca atgatggtga tgcacctatt gttgccgtat
721 atgtttatga cgtaaacaac aacgccaatc agcttgaacc taggcaaaag gtaatttttt
781 gaacaaatat ttccatcaaa gttgtaattt tctatgtttt tcatatgttc ttacaatgca
841 attcatagcg taaaacatta aatttttcat tgataaaaat ttcaggagtt cctattagcc
901 ggcaacaaca atcgggctca acaacaacaa gtatatggta gctcaattga gcaacactct
961 gggcaaaaca tattcagcgg atttggtgtt gagatgctaa gtgaggcttt aggcatcaac
1021 gcagtagcag caaagaggct acagagccaa aatgatcaaa gaggagagat catacatgtg
1081 aagaatggcc ttcaattgtt gaaaccgact ttgacacaac agcaagaaca agcacaagca
1141 caagatcaat atcaacaagt tcaatacagt gaacgacagc aaacatcttc tcgatggaac
1201 ggattggagg agaacttttg cacgatcaag gtgagagtaa acattgaaaa tcctagtcgt
1261 gctgattcat acaacccacg tgccggaagg ataacaagtg tcaatagtca gaagttcccc
1321 atccttaacc tcatccaaat gagcgctacc agagtaaacc tataccaggt atttattata
1381 gcaccgtttt gttctcttca ttttttttgg aagatctttg atttgttgct tatataacat
1441 tattctctac tgatttctac agaatgctat tctctcgccg ttctggaacg tcaatgctca
1501 tagtttggtc tatatgattc aagggcgatc tcgagttcaa gtcgttagta actttggaaa
1561 gactgtgttt gatggtgtcc ttcgcccagg acaattattg atcattccgc aacattatgc
1621 tgtcttgaag aaagcagagc gtgaaggatg ccaatatatc gcaatcaaga caaacgctaa
1681 cgccttcgtc agccaccttg cagggaaaaa ctcagtattc cgtgccttgc cagttgatgt
1741 agtcgctaat gcgtatcgca tctcaaggga gcaagcccga agcctcaaga acaacagggg
1801 agaagagcac ggtgccttca ctcctagatt tcaacaacaa tactacccag gattatcgaa
1861 tgagtccgaa agcgagacct cagagtaatg taattgagaa ctagtatcgg cgtagagtaa
1921 aataaaacac cacaagtatg acacttggtg gtgattctgt tcgatatcag tactaaataa
1981 aggttacaaa cttcttaatt ttccta

(Case 2 - Mutant 2: Deletion of One T, Frameshift Mutation)

1 aactagcttg gtctgtcttt gaactcacat caattagctt aagtttccat aagcaagtac
61 aaatagctat ggcgagttcc gttttctctc ggttttctat atacttttgt gttcttctat
121 tatgccatgg ttctatggcc cagctattta atcccagcac aaacccatgg catagtcctc
181 ggcaaggaag ttttagggag tgtagatttg atagactaca agcatttgaa ccacttcgga
241 aagtgaggtc agaagctggg gtgactgagt acttcgatga gaagaatgaa ttattccagt
301 gcacgggtac ttttgtgatc cgacgtgtca ttcagcctca aggccttttg gtacctcgat
361 acacaaatat tcctggcgtg gtctacatca tccaaggttt gtatcctaat aaatataatc
421 gagaactcta tcgatgcaac tagtagttat gatctccatg gtcaaattaa tgttgtatgt
481 accttatgtg aacattataa tttttaggga gaggttctat gggtttaacc ttccccggt
541 gccctgcgac ttaccagcaa caattccaac aattttcatc tcaaggccaa agtcagagcc
601 aaaagtttag agatgagcac caaaagattc atcaatttag gcaaggagac attgttgcac
661 tcccagctgg tgttgcacat tggttctaca atgatggtga tgcacctatt gttgccgtat
721 atgtttatga cgtaaacaac aacgccaatc agcttgaacc taggcaaaag gtaatttttt
781 gaacaaatat ttccatcaaa gttgtaattt tctatgtttt tcatatgttc ttacaatgca
841 attcatagcg taaaacatta aatttttcat tgataaaaat ttcaggagtt cctattagcc
901 ggcaacaaca atcgggctca acaacaacaa gtatatggta gctcaattga gcaacactct
961 gggcaaaaca tattcagcgg atttggtgtt gagatgctaa gtgaggcttt aggcatcaac
1021 gcagtagcag caaagaggct acagagccaa aatgatcaaa gaggagagat catacatgtg
1081 aagaatggcc ttcaattgtt gaaaccgact ttgacacaac agcaagaaca agcacaagca
1141 caagatcaat atcaacaagt tcaatacagt gaacgacagc aaacatcttc tcgatggaac
1201 ggattggagg agaacttttg cacgatcaag gtgagagtaa acattgaaaa tcctagtcgt
1261 gctgattcat acaacccacg tgccggaagg ataacaagtg tcaatagtca gaagttcccc
1321 atccttaacc tcatccaaat gagcgctacc agagtaaacc tataccaggt atttattata
1381 gcaccgtttt gttctcttca ttttttttgg aagatctttg atttgttgct tatataacat
1441 tattctctac tgatttctac agaatgctat tctctcgccg ttctggaacg tcaatgctca
1501 tagtttggtc tatatgattc aagggcgatc tcgagttcaa gtcgttagta actttggaaa
1561 gactgtgttt gatggtgtcc ttcgcccagg acaattattg atcattccgc aacattatgc
1621 tgtcttgaag aaagcagagc gtgaaggatg ccaatatatc gcaatcaaga caaacgctaa
1681 cgccttcgtc agccaccttg cagggaaaaa ctcagtattc cgtgccttgc cagttgatgt
1741 agtcgctaat gcgtatcgca tctcaaggga gcaagcccga agcctcaaga acaacagggg
1801 agaagagcac ggtgccttca ctcctagatt tcaacaacaa tactacccag gattatcgaa
1861 tgagtccgaa agcgagacct cagagtaatg taattgagaa ctagtatcgg cgtagagtaa
1921 aataaaacac cacaagtatg acacttggtg gtgattctgt tcgatatcag tactaaataa
1981 aggttacaaa cttcttaatt ttccta

Amino Acid Sequence of Mutant Glutenin B1
(Frameshift Mutation: Case 1 - Mutant 1)

MASSVFSRFSIYFCVLLLCHGSMAQLFNPSTNPWHSPRQGSFRECRFDRLQAFEPLRKVR SEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGLYPNKYNREL YRCNLSPWSNCCMYLMTLFLGRGSMGLTFPVALRLTSNNSNNFHLKAKVRAKSLEMSTKR FINLGKETLLHSQLVLHIGSTMMMHLLLPYMFMTTTTPTSLNLGKRFFEQIFPSKLFSW FFICSYNAIHSVKHIFHKFQEFLLAGNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSE ALGINAVAARRLQSQNDQRGEIIHVKNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQT SSRWNGLEENFCTIKVRVNIENPSRADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLY QVFIIAPFCSLHFFWKIFDLLLIHYSLLISTECYSLAVLERQCSFGLYDS RAISSSSRLW KDCVWCPSPRTIIDHSATLCCLEESRARMPIYRNQDKRRLRQPPCREKLSIPCLASCSRC VSHLKGASPKPQEQQGRRARCLHSISTTILPRIIEVRKRDLRV

(Frameshift Mutation: Case 2 - Mutant 2)

MASSVFSRFSIYFCVLLLCHGSMAQLFNPSTNPWHSPRQGSFRECRFDRLQAFEPLRKVR SEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGLYPNKYNREL YRCNLSPWSNCCMYLMTLFLGRGSMGLTFPGALRLTSNNSNNFHLKAKVRAKSLEMSTKR FINLGKETLLHSQLVLHIGSTMMMHLLLPYMFMTTTTPTSLNLGKRFFEQIFPSKLFSW FFICSYNAIHSVKHIFHKFQEFLLAGNNNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSE ALGINAVAARRLQSQNDQRGEIIHVKNGLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQT SSRWNGLEENFCTIKVRVNIENPSRADSYNPRAGRITSVNSQKFPILNLIQMSATRVNLY QVFIIAPFCSLHFFWKIFDLLLIHYSLLISTECYSLAVLERQCSFGLYDSRAISSSSRLW KDCVWCPSPRTIIDHSATLCCLEESRARMPIYRNQDKRRLRQPPCREKLSIPCLASCSRC VSHLKGASPKPQEQQGRRARCLHSISTTILPRIIEVRKRDLRV

2.3 Prediction of Primary Structure for Wild-Type Globulin

Nucleotide Sequence of the Globulin-Encoding Gene OsGlb

1 cgatcgccat catctcatca tcagttcatc accaacaaac aaaagaggaa aaaaaacata
61 tacacttcta gtgattgtct gattgatcat caatggctag caaggtcgtc ttcttcgcgg
121 cggcgctcat ggcggccatg gtggccatct ccggcgcgca gctgagcgag tcggagatga
181 ggttcaggga caggcagtgc cagcgggagg tgcaggacag cccgctggac gcgtgccggc
241 aggtgctcga ccggcagctc accggccggg agaggttcca gccgatgttc cgccgcccgg
301 gcgcgctcgg cctgcggatg cagtgctgcc agcagctgca ggacgtgagc cgcgagtgcc
361 gctgcgccgc catccgccgg atggtgagga gctacgagga gagcatgccg atgcccctgg
421 agcaaggctg gtcgtcgtcg tcgtcggagt actacggcgg cgaggggtcg tcgtcggagc
481 aggggtacta cggcgagggg tcgtcggagg agggctacta cggcgagcag cagcagcagc
541 cggggatgac ccgcgtgagg ctgaccaggg cgaggcagta cgcggcgcag ctgccgtcga
601 tgtgccgggt tgagccccag cagtgcagca tcttcgccgc cggccagtac taggcttagc
661 tggcttgcct catagctagt aggatcacac cgttgctgtg ttgcatgcaa cgagatagtg
721 atcaaaacaa ataatgaata atgaaatgtt ttgaaaacaa aatagctggt gataaagtac
781 tatatatgat tttgtgcgtt ctg

MASKVVFFAAALMAAMVAISGAQLSESEMRFRDRQCQREVQDSPLDACRQVLDRQLTGRERFQPMFRRPGALGLRMQCCQQLQDVSRECRCAAIRRMVRSYEESMPMPLEQGWSSSSSEYYGGEGSSSEQGYYGEGSSEEGYYGEQQQQPGMTRVRLTRARQYAAQLPSMCRVEPQQCSIFAAGQY

2.4 Prediction of Primary Structure for Mutant Globulin

OsGlb Nucleotide Sequence of Gene Mutation

1 cgatcgccat catctcatca tcagttcatc accaacaaac aaaagaggaa aaaaaacata
61 tacacttcta gtgattgtct gattgatcat caatggctag caaggtcgtc ttcttcgcgg
121 cggcgctcat ggcggccatg gtggccatct ccggcgcgca gctgagcgag tcggagatga
181 ggttcaggga caggcagtgc cagcgggagg tgcaggacag cccgctggac gcgtgccggc
241 aggtgctcga ccggcagctc accggccggg agaggttcca gccgatgttc cgccgcccgg
301 gcgcgctcgg cctgcggatg cagtgctgcc agcagctgca ggacgtgagc cgcgagtgcc
361 gctgcgccgc catccgccgg atggtgagga gctacgagga gagcatgccg atgcccctgg
421 agcaaggctg gtcgtcgtcg tcgtcggagt actaacggcgg cgaggggtcg tcgtcggagc
481 aggggtacta cggcgagggg tcgtcggagg agggctacta cggcgagcag cagcagcagc
541 cggggatgac ccgcgtgagg ctgaccaggg cgaggcagta cgcggcgcag ctgccgtcga
601 tgtgccgggt tgagccccag cagtgcagca tcttcgccgc cggccagtac taggcttagc
661 tggcttgcct catagctagt aggatcacac cgttgctgtg ttgcatgcaa cgagatagtg
721 atcaaaacaa ataatgaata atgaaatgtt ttgaaaacaa aatagctggt gataaagtac
781 tatatatgat tttgtgcgtt ctg

Amino Acid Sequence of Mutant Globulin

MASKVVFFAA ALMAAMVAIS GAQLSESEMR FRDRQCQREV QDSPLDACRQ VLDRQLTGRE RFQPMFRRPG ALGLRMQCCQ QLQDVSRECR CAAIRRMVRS YEESMPMPLE QGWSSSSSEY RRRGVVVGAG VLRRGVVGGG LLRRAAAAAG DDPREADQGE AVRGAAAVDV PGAPAVQHLR

Model Summary: Prediction Results of Primary Structures for Wild-Type and Mutant Glutenin B1, and Globulin

GlutelinB1 Globulin
WT WT Mutant-1(50%) Mutant-2(50%) Mutant-2(50%) WT Mutant
Number of amino acids 499 499 583 583 583 186 185
Molecular weight 56550.58 56550.58 67178.78 67136.70 67136.70 21054.74 20346.4
PI 9.26 9.26 9.66 9.66 9.66 7.48 10.22
Total number of negatively charged residues 39 39 38 38 38 21 20
Total number of positively charged residues 50 50 70 70 70 22 29
Instability index 52.11 52.11 58.90 58.42 58.42 69.24 72.62
Aliphatic index 76.19 76.19 85.95 85.45 85.45 52.53 75.46
Grand average of hydropathicity -0.495 -0.495 -0.226 -0.234 -0.234 -0.629 -0.317
Amino acids composition
Glutelin-WT Glutelin-Mutant1 Glutelin-Mutant2 Globulin-WT Globulin-Mutant
Rice GlutelinB1 - Mutation Globulin - Mutation
Biological Value(BV)
taste Unable to determine Unable to determine
digestibility Unable to determine Unable to determine
allergenicity Unable to determine Unable to determine

Model Ensemble 3

3.1 Tertiary Structure of Wild-Type Glutenin B1

3.2 Prediction of Tertiary Structure for Mutant Glutenin B1 and Confidence Level

Case 1-Glutelin M1

Case 2-Glutelin M2

3.3 Prediction of Tertiary Structure for Wild-Type Globulin and Confidence Level

(Obtained Directly from Protein Database)

3.4 Prediction of Tertiary Structure for Mutant Globulin and Confidence Level

Model Ensemble 4: Molecular Docking

4.1 Molecular Docking of Wild-Type Glutenin B1 with Human Immunoglobulin E Heavy Chain Constant Region

Binding Sites

Glutelin IgE
173Asp 398Gln
285Tyr 231Arg
323Asp 272Gln
377Gln 388Arg
421Gln 370His
431Ala 273Arg
439Lys 215Gly, 242Asp, 241Val
440Asn 242Asp
471Glu 217Ser

4.2 Molecular Docking of Mutant Glutenin B1 with Human Immunoglobulin E Heavy Chain Constant Region

Binding Sites
Case 1

Residue in Glutelin-M1 Interacting Residue in IgE
37Arg 41Trp, 44Thr
97Tyr 94Asp
159Ser 5Ser
160Asn 4Gln
161Asn 202Glu
165Lys 191Thr
172Ser 187Asp
195Leu 188Arg
196His 188Arg

case 2

Glutelin-M2 IgE
37Arg 42Trp, 44Thr
97Tyr 94Asp
159Ser 5Ser
160Asn 4Gln, 7Ser
161Asn 202Glu
165Lys 191Thr
172Ser 187Asp
195Leu 188Arg
196His 188Arg

4.3 Molecular Docking of Wild-Type Globulin with Human Immunoglobulin E Heavy Chain Constant Region

Binding Sites

Globulin IgE
98Arg, 102Glu 15Lys
98Arg, 102Glu 16Asn
36Gln, 33Arg 20Asn
37Arg, 95Arg 22Thr
95Arg 23Ser
58Arg 31Thr
53Arg 55Arg
62Gln 58Thr
66Arg 63Gly, 65Tyr
49Gln 68Ile
139Glu 253Thr
127Ser 268Lys
146Gln 295Thr
146Gln 312Ser
111Gly, 112Trp 377Lys
114Ser 378Thr
112Trp 382Gly

4.4 Molecular Docking of Mutant Globulin with Human Immunoglobulin E Heavy Chain Constant Region

Bind Sites

Globulin-M IgE
12Arg 41Asp
12Arg 12Ser
317Ser 64Asn
105Ser 76Gln
5Ser 167Val
95Trp 168Asp
193Gln 170Pro
98Asn 172Ala
46Ser 180Arg
Molecular docking score Globulin-WT IgE Globulin-M IgE Glutelin-WT IgE Glutelin-M1/Glutelin-M2 IgE
Number of atoms interface 301 20.6% 279 8.4% 209 14.7% 242 7.3% 265 6.6% 227 6.9% 200 4.2% 235 7.1%
surface 1128 77.0% 2054 62.2% 1211 85.5% 2054 62.2% 2603 65.3% 2053 62.2% 3753 79.6% 2055 62.2%
Hydrogen bonds 30 14 19 15
Salt bridges 1 / 3 6
Number of residues interface 75 40.3% 91 21.3% 61 33.0% 81 18.9% 82 16.4% 64 15.0% 55 9.4% 71 16.6%
surface 179 96.2% 403 94.2% 185 100.0% 403 94.2% 479 96.0% 403 94.2% 576 98.8% 403 94.2%
Solvent-accessible area, Å interface 2827.0 16.7% 2568.2 10.2% 2111.5 10.6% 2058.0 8.2% 2226.3 6.7% 2279.8 9.0% 2374.4 4.4% 1975.7 7.8%
Solvation energy, kcal/mol isolated structure -110.7 100.0% -379.5 100.0% -85.1 100.0% -379.5 100.0% -370.4 100.0% -379.3 100.0% -363.6 100.0% -379.3 100.0%
average gain -12.7 11.5% -6.6 1.7% -12.0 14.0% -5.7 1.5% -5.6 1.5% -5.4 1.4% -12.3 3.4% -5.5 1.5%
P-value 0.0205 0.0197 0.0166 0.0177 0.0492 0.0489 0.0456 0.0483