New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	305 =	33 (0.860)	14 (0.380)	13/386	2.7	30.4%	intergenic (+50/‑32)	thrL/thrA	thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I
	?	NC_010473	= 301	32 (0.860)					intergenic (+46/‑36)	thrL/thrA	thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Rejected: Unknown rejection reason.

TATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTA  >  NC_010473/109‑502                                                                                                                                                                                                     |                                                                                                                                                                                                                 tATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CGCAGAAAAA‑GCCCGCACCTGACAGTGCGGGCttttttcg                                                                                                                                                                                                          <  1:4566S38‑M2/200‑9 (MQ=255)         tAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAG‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑Ca                                                                                                                                                                                              >  1:14420S14/1‑200 (MQ=255)                  aaaTACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTA‑ACACATACAGGAAG‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACg                                                                                                                                                                                     >  1:22358S7/1‑200 (MQ=255)                            aCCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑‑‑CGA‑C‑CAAAGGTAACGAGGTAACAAcc                                                                                                                                                                          >  1:12719S60/1‑200 (MQ=255)                             ccAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTA‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatg                                                                                                                                                                               <  1:17738S18‑M2/200‑36 (MQ=255)                                  ataGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTA‑ACGCATACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttcgaccaaaggtaacgaggtaacaaccatgcgag                                                                                                                                                                          <  1:29687S1‑M2/200‑41 (MQ=255)                                       cATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttga                                                                                                                                                                     <  1:11548S180‑M2/200‑46 (MQ=255)                                             gcACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAgtgtgttgaa                                                                                                                                                          >  1:11851S38/1‑194 (MQ=255)                                              cacaGACAGATAAAAATTACAGAATACACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAg                                                                                                                                                           <  1:3207S25/200‑1 (MQ=255)                                                cagacagaTAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑TTCGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTc                                                                                                                                                        <  1:4054S2/200‑1 (MQ=255)                                                cagacagaTAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑‑‑CGA‑C‑CGAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTcgg                                                                                                                                                      >  1:22262S23/1‑200 (MQ=255)                                                             aTTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGt                                                                                                                                          <  1:17939S12/200‑1 (MQ=255)                                                               tACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑‑‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGc                                                                                                                                       >  1:28430S29/1‑200 (MQ=255)                                                                  cagagtcctacaacatccatgaaaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGC‑‑‑CAG‑‑CGCGTACAGGAAA‑CACA‑‑AAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcaga                                                                                                                                      <  1:3838S98‑M2/191‑77 (MQ=255)                                                                  agagT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAA‑GCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCaaa                                                                                                                                    <  1:313S34/200‑1 (MQ=255)                                                                     attaacagaacaTCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAA‑GCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑‑‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATg                                                                                                                                  <  1:14423S47/192‑1 (MQ=255)                                                                          cacaACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAg                                                                                                                               <  1:2283S1/200‑1 (MQ=255)                                                                           acaacaTCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑TTCGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAg                                                                                                                               <  1:13908S43/200‑1 (MQ=255)                                                                                         aCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑‑‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCgtgt                                                                                                              >  1:32776S3/1‑200 (MQ=255)                                                                                          cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCgtgt                                                                                                              <  1:5361S6/200‑1 (MQ=255)                                                                                              ttAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGcc                                                                                                          <  1:23259S59/200‑1 (MQ=255)                                                                                                   accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGatat                                                                                                     <  1:12873S7/200‑1 (MQ=255)                                                                                                      accaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttcgaccaaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctgga                                                                                                        <  1:12096S13‑M2/200‑107 (MQ=255)                                                                                                        caTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTgg                                                                                                <  1:27455S14/200‑1 (MQ=255)                                                                                                             ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaat                                                                                                 <  1:9624S19‑M2/200‑114 (MQ=255)                                                                                                                          catTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAA‑GCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑TTCGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCcaggcagg                                                                             <  1:21151S51/200‑1 (MQ=255)                                                                                                                                  caGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGTCAGGG‑CAGGTg                                                                     <  1:12704S5/200‑1 (MQ=255)                                                                                                                                  caGGTAACGGTGCGGGCTACACG‑GTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttcgaccaaaggtaacgaggtaacaaccatccgagtgtttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccacc                                                                            <  1:16490S4‑M2/200‑135 (MQ=255)                                                                                                                                   aGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGC‑‑GGACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGcc                                                                  <  1:16810S2/200‑1 (MQ=255)                                                                                                                                    ggTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccacc                                                                          <  1:6721S12‑M2/200‑137 (MQ=255)                                                                                                                                     gTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccacc                                                                         <  1:23070S4‑M2/200‑138 (MQ=255)                                                                                                                                      tAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCa                                                                 >  1:12875S10/1‑200 (MQ=255)                                                                                                                                       aaCGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccaccgt                                                                       <  1:32391S14‑M2/200‑140 (MQ=255)                                                                                                                                         cGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccaccgtcc                                                                     <  1:8054S69‑M2/200‑142 (MQ=255)                                                                                                                                             gtgcggtG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCCGGCAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTct                                                           <  1:6006S36/194‑2 (MQ=255)                                                                                                                                              cGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccaccgtcctctct                                                                <  1:24520S19‑M2/200‑147 (MQ=255)                                                                                                                                                   tG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGc                                                    >  1:899S5/1‑200 (MQ=255)                                                                                                                                                        gcgTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CTA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTGGCTGccccc                                                <  1:4980S46/200‑1 (MQ=255)                                                                                                                                                                gAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCT‑CGAACTCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGG‑‑CATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGAGAT‑CCGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCaaaa                                         <  1:11611S17/200‑1 (MQ=255)                                                                                                                                                                   a‑cacAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCac                                     >  1:6875S153/1‑200 (MQ=255)                                                                                                                                                                          aaaaaaGCCCGCACCTGACAGTGCGGGCttttttcgaccaaaggtaacgaggtaacaaccatgcgagtgttgaagttcggcggtacatcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccaggcaggggcaggtggccaccgtcctctctgcccccgccaaaatcaccaaccacct                                      <  1:31989S5‑M2/200‑173 (MQ=255)                                                                                                                                                                           cagaaagctcaaccccacaatGCGCGCTTTTTTTT‑‑TACGAGCTCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCaccaac                                 <  1:24381S5/180‑1 (MQ=255)                                                                                                                                                                                            cAGTGCGGGCTTTTTTTT‑‑TTCGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTg              <  1:2042S28/200‑1 (MQ=255)                                                                                                                                                                                              gTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAGGAACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTGGCTGC‑‑‑‑G‑‑‑AAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCa     <  1:10780S40/200‑1 (MQ=255)                                                                                                                                                                                               tGCGGGCTTTTTTTT‑‑TTCGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGaaa           <  1:9998S4/200‑1 (MQ=255)                                                                                                                                                                                                 cGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCC‑‑‑CTGCC‑‑‑GCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTa  <  1:11877S87/200‑1 (MQ=255)                                                                                                                                                                                                     |                                                                                                                                                                                                                 TATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGACAGATAAAAATTACAGAGT‑‑ACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTG‑ACGCGTACAGGAAA‑CACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑‑T‑CGA‑C‑CAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCAAATGCAG‑AACGTTTTCTGCGTGTTGCCGATATTCTGG‑AAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTA  >  NC_010473/109‑502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.