| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 305 = | 33 (0.860) | 14 (0.380) | 13/386 | 2.7 | 30.4% | intergenic (+50/‑32) | thrL/thrA | thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I |
| ? | NC_010473 | = 301 | 32 (0.860) | intergenic (+46/‑36) | thrL/thrA | thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I | |||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| Rejected: Unknown rejection reason. | |||||||||||
AGGTGGTTGGTGATTTTGGCGGGGGCAGAGAGGACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/476‑305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaa‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATGCCTATATTGGTTAAAGTATTTAGTGACCTAAGTCAATA < NC_010473/301‑109 AGGTGGTTGGTGATTTTGGCGGGGGCAGAGAGGACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTT < 1:31989S5/200‑1 AGAGAGGACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCG < 1:24520S19/200‑1 GGACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCG < 1:8054S69/200‑1 ACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTT < 1:32391S14/200‑1 GGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAAACACTCGGATGGTTGTTACCTCGTTACCTTT‑GGTCGAA‑‑‑‑‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTAC‑CGTGTAGCCCGCACCGTTACCTG < 1:16490S4/200‑1 GGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTAC < 1:23070S4/200‑1 GGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAA‑‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACC < 1:6721S12/200‑1 ATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGG < 1:9624S19/200‑1 TCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTTTGGTCGAAAAA‑‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGT < 1:12096S13/200‑1 TCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTT‑‑TGTGTTTCCTGTACGCG‑‑CTG‑‑‑GCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTaggactctg < 1:3838S98/200‑10 TCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATG < 1:11548S180/200‑1 CTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAAAGCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTATGCGT‑TAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATGCCTAT < 1:29687S1/200‑1 CATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑TAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATGCCTATATTGG < 1:17738S18/200‑1 CGAAAAAA‑GCCCGCACTGTCAGGTGCGGGCTTTTT‑CTGCGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATGCCTATATTGGTTAAAGTATTTAGTGACCTAAGTCAATA < 1:4566S38/200‑1 AGGTGGTTGGTGATTTTGGCGGGGGCAGAGAGGACGGTGGCCACCTGCCCCTGCCTGGCATTGCTTTCCAGAATATCGGCAACACGCAGAAAACGTTCTGCATTTGCCACTGATGTACCGCCGAACTTCAA‑CACTCGCATGGTTGTTACCTCGTTACCTTT‑GGTCGAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/476‑305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaa‑GCCCGCACTGTCAGGTGCGGGCTTTTTTCTGTGTTTCCTGTACGCGT‑CAGCCCGCACCGTTACCTGTGGTAATGGTGATGGTGGTGGTAATGGTGGTGCTAATGCGTTTCATGGATGTTGTGTACTCTGTAATTTTTATCTGTCTGTGCGCTATGCCTATATTGGTTAAAGTATTTAGTGACCTAAGTCAATA < NC_010473/301‑109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |