New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	4604784 =	29 (0.760)	12 (0.320)	12/388	2.9	30.3%	coding (896/1218 nt)	nanX	MFS transporter
	?	NC_010473	= 4604780	27 (0.720)					coding (892/1218 nt)	nanX	MFS transporter
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Rejected: Unknown rejection reason.

AACTGGCCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATT  >  NC_010473/4604582‑4604970                                                                                                                                                                                                                  |                                                                                                                                                                                                        aaCTGGCCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑ctct                                                                                                                                                                                                        <  1:19892S24/200‑1 (MQ=255)       ccGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCttttttt                                                                                                                                                                                                  <  1:14799S19/200‑1 (MQ=255)              aCGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCt                                                                                                                                                                                          >  1:24991S15/1‑200 (MQ=255)               cGGACTACTTCCTTCCTACCTG‑CAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCtgt                                                                                                                                                                                        <  1:24170S78/200‑1 (MQ=255)                 aaacacgatcctcctACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCtgtg                                                                                                                                                                                       <  1:18268S22/189‑1 (MQ=255)                   accgtatttttctacctggcagatAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTCACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAAAGCCTTTGTAGTTGGTCTAATAACTTCATTT‑ATTTTCCTTT‑GCTC‑CTTtttttatttctgtgaa                                                                                                                                                                                         >  1:6360S1‑M2/12‑184 (MQ=255)                     actTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGaaaa                                                                                                                                                                                   >  1:31456S12/1‑200 (MQ=255)                              ctACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTTTG‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑ctcttct                                                                                                                                                                         >  1:32129S69/1‑200 (MQ=255)                                aCCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTT‑‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTtat                                                                                                                                                                    >  1:237S15/1‑200 (MQ=255)                                 ccTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTT‑‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTTTATTTTAGCTT‑G‑TC‑CTCttttttatttctgtgaaaaactcttctcttata                                                                                                                                                                        <  1:25113S10‑M2/200‑34 (MQ=255)                                  cTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTT‑‑G‑TC‑CTCttttatttctgtgaaaaactcttctcttactgggt                                                                                                                                                                      <  1:29752S31‑M2/200‑36 (MQ=255)                                     gCAGATAATGGAAGTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTT‑‑TAGTTGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGa                                                                                                                                                               <  1:18616S23/200‑1 (MQ=255)                                        gATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCtttttatttctgtgaaaaactcttctcttataggattatg                                                                                                                                                                 <  1:18040S26‑M2/200‑41 (MQ=255)                                          tAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTT‑AGG‑AACACTGACAGGTACCATATTTTTTTTTGGTTTTGTTGGT‑ATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCttttttatttctgtgaaaaactcttctcttataggattatg                                                                                                                                                                <  1:30409S7‑M2/200‑42 (MQ=255)                                               gA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGtctc                                                                                                                                                      >  1:21258S27/1‑200 (MQ=255)                                                               tCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑GCTC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGttt                                                                                                                                       >  1:10399S62/1‑200 (MQ=255)                                                                   ttCAACTCTGATGACAATAGCAGGTTTAGGTAACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGAT‑‑‑CAAAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAAt                                                                                                                                 <  1:25118S31/200‑1 (MQ=255)                                                                       aCTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAAttt                                                                                                                               <  1:30946S8/200‑1 (MQ=255)                                                                          ctGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTTTATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAg                                                                                                                             >  1:23678S1/1‑200 (MQ=255)                                                                                                    cacTGACAGGTACAATATTTTT‑‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTTTG‑TC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTta                                                                                                >  1:11444S2/1‑200 (MQ=255)                                                                                                      cTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTT‑‑G‑TC‑‑Tttttatttctgtgaaaaactcttcataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattac                                                                                                    >  1:21345S4‑M2/1‑98 (MQ=255)                                                                                                      acatgagatACAATATTTTTT‑‑‑GGTTTTGTTGGTG‑CAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAATTTtat                                                                                               <  1:3904S13/192‑1 (MQ=255)                                                                                                         aCAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCtttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatga                                                                                                  <  1:1989S10‑M2/200‑104 (MQ=255)                                                                                                          cAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTtatagat                                                                                           <  1:7306S7/200‑4 (MQ=255)                                                                                                                  atatTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACtt                                                                                   <  1:18078S29/200‑1 (MQ=255)                                                                                                                       tttt‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCtttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattactttccaacaa                                                                                    <  1:22987S7‑M2/200‑118 (MQ=255)                                                                                                                                     ttgGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAAAACTCTTCTCTAATAAGGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTTAATTTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAAtt                                                                      <  1:10894S10/200‑1 (MQ=255)                                                                                                                                      tgGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattactttccaacaaaattaagaggatt                                                                        >  1:8006S7‑M2/1‑71 (MQ=255)                                                                                                                                        gTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTAT‑‑TTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGAt                                                              >  1:30782S15/1‑200 (MQ=255)                                                                                                                                           aTAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑A‑TCGCTTtttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattactttccaacaaaattaagaggattagg                                                                    >  1:7704S13‑M2/1‑67 (MQ=255)                                                                                                                                             aaGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAg‑gg                                                        >  1:15261S7/1‑200 (MQ=255)                                                                                                                                                           aaaa‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCttattt                                          <  1:29481S27/200‑1 (MQ=255)                                                                                                                                                                     ttGTAGTCGGTCTCATGACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCttttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattactttccaacaaaattcaagaggattagggaccggtcttatttataacttag                                           <  1:14334S44‑M2/200‑159 (MQ=255)                                                                                                                                                                            cGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCttttttatttctgtgaaaaactcttctcttataggattatgtctctttggattaatgtttacaaatttaggtattgcagggttggttccaaaatttatatatgattactttccaacaaaattaagaggattagggaccggtcttatttataacttaggggcaact                                    >  1:247S24‑M2/1‑35 (MQ=255)                                                                                                                                                                                 taataaCTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAAACAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTgg                       <  1:30998S3/200‑1 (MQ=255)                                                                                                                                                                                      aCTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAAt                 <  1:11981S17/200‑1 (MQ=255)                                                                                                                                                                                        ttCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATg                <  1:19986S24/200‑1 (MQ=255)                                                                                                                                                                                          cATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGcc             <  1:11437S6/200‑1 (MQ=255)                                                                                                                                                                                           attt‑atttTCCTTT‑G‑TC‑CTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGGGG‑‑TAGAGGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCa          >  1:11722S14/1‑200 (MQ=255)                                                                                                                                                                                                      cTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTAtt  <  1:15528S15/200‑1 (MQ=255)                                                                                                                                                                                                                  |                                                                                                                                                                                                        AACTGGCCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTT‑‑‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAA‑‑GCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TC‑CTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATT  >  NC_010473/4604582‑4604970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.