New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	4604784 =	29 (0.760)	12 (0.320)	12/388	2.9	30.3%	coding (896/1218 nt)	nanX	MFS transporter
	?	NC_010473	= 4604780	27 (0.720)					coding (892/1218 nt)	nanX	MFS transporter
Rejected: Polymorphic indel expands or contracts a homopolymer stretch.
Rejected: Unknown rejection reason.

CCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAT  >  NC_010473/4604588‑4604982                                                                                                                                                                                                          |                                                                                                                                                                                                                 ccGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCttttttt                                                                                                                                                                                                               <  1:14799S19/200‑1 (MQ=255)        aCGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCt                                                                                                                                                                                                       >  1:24991S15/1‑200 (MQ=255)         cGGACTACTTCCTTCCTACCTG‑CAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCtgt                                                                                                                                                                                                     <  1:24170S78/200‑1 (MQ=255)           aaacacgatcctcctACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCtgtg                                                                                                                                                                                                    <  1:18268S22/189‑1 (MQ=255)               actTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGaaaa                                                                                                                                                                                                >  1:31456S12/1‑200 (MQ=255)                  accgtatttttctacctggcagataatggagttaatacagtggtcatttcaactctgatgacaatagcaggtttaggaacactcacaggtacaatattttttggttttgttggtgataagattggtgtaaaaaaaaagcctttgtagttggtctaataacttcatttattttcctttgctccttTTTTT‑ATTTCTGTGaa                                                                                                                                                                                                  >  1:6360S1‑M1/185‑200 (MQ=255)                        ctACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTTTG‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑ctcttct                                                                                                                                                                                      >  1:32129S69/1‑200 (MQ=255)                          aCCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTT‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTtat                                                                                                                                                                                 >  1:237S15/1‑200 (MQ=255)                               gCAGATAATGGAAGTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTT‑‑TAGTTGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGa                                                                                                                                                                            <  1:18616S23/200‑1 (MQ=255)                                   cctggcagataatggagttaatacagtggtcatttcaactctgatgacaatagcaggtttaggaacactgacaggtacaatatttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcattttattttagcttgtcctcTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTtata                                                                                                                                                                                <  1:25113S10‑M1/33‑1 (MQ=255)                                     ctggcagataatggagttaatacagtggtcatttcaactctgatgacaatagcaggtttaggaacactgacaggtacaatattttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttccttgtcctcTTTT‑‑ATTTCTGTGAAAAA‑‑CTCttctcttactgggt                                                                                                                                                                            <  1:29752S31‑M1/35‑7 (MQ=255)                                         gA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGtctc                                                                                                                                                                   >  1:21258S27/1‑200 (MQ=255)                                          gataatggagttaatacagtggtcatttcaactctgatgacaatagcaggtttaggaacactgacaggtacaatattttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttgtcctcTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATg                                                                                                                                                                       <  1:18040S26‑M1/40‑1 (MQ=255)                                           taatggagttaatacagtggtcatttcaactctgatgacaatagcaggttaggaacactgacaggtaccatatttttttttggttttgttggtataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttgtcctcTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATg                                                                                                                                                                       <  1:30409S7‑M1/41‑1 (MQ=255)                                                         tCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑GCTCCTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGttt                                                                                                                                                    >  1:10399S62/1‑200 (MQ=255)                                                             ttCAACTCTGATGACAATAGCAGGTTTAGGTAACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGAT‑‑‑CAAAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAAt                                                                                                                                              <  1:25118S31/200‑1 (MQ=255)                                                                 aCTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAAttt                                                                                                                                            <  1:30946S8/200‑1 (MQ=255)                                                                    ctGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTTTATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAg                                                                                                                                          >  1:23678S1/1‑200 (MQ=255)                                                                                              cacTGACAGGTACAATATTTTT‑GGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTTTG‑TCCTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTta                                                                                                             >  1:11444S2/1‑200 (MQ=255)                                                                                                acatgagatACAATATTTTTTGGTTTTGTTGGTG‑CAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAATTTtat                                                                                                            <  1:3904S13/192‑1 (MQ=255)                                                                                                    cAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTtatagat                                                                                                        <  1:7306S7/200‑4 (MQ=255)                                                                                                         ctgacaggtacaatattttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttccttgtctTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTC‑‑‑‑ATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTAc                                                                                                  >  1:21345S4‑M1/98‑200 (MQ=255)                                                                                                         acaggtacaatattttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttgtcctcTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGa                                                                                                      <  1:1989S10‑M1/103‑1 (MQ=255)                                                                                                            atatTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACtt                                                                                                <  1:18078S29/200‑1 (MQ=255)                                                                                                                       ttttggttttgttggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttgtcctcTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCcaa‑caa                                                                                       <  1:22987S7‑M1/117‑1 (MQ=255)                                                                                                                            ttgGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTT‑‑ATTTCTGTGAAAAAAACTCTTCTCTAATAAGGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTTAATTTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAAtt                                                                                   <  1:10894S10/200‑1 (MQ=255)                                                                                                                               gTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTAT‑‑TTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGAt                                                                          >  1:30782S15/1‑200 (MQ=255)                                                                                                                                   tggtgataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttgtcctcTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGAtt                                                                         >  1:8006S7‑M1/72‑200 (MQ=255)                                                                                                                                    aaGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAg‑gg                                                                    >  1:15261S7/1‑200 (MQ=255)                                                                                                                                       ataagattggtgtaaaaaaagcctttgtagtcggtctaataacttcatttattttcctttatcgcttTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAg‑g                                                                     >  1:7704S13‑M1/68‑200 (MQ=255)                                                                                                                                                  aaaaGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCttattt                                                      <  1:29481S27/200‑1 (MQ=255)                                                                                                                                                                ttgtagtcggtctcatgacttcatttattttcctttgtcctcTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATTCAAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAg                                             <  1:14334S44‑M1/158‑1 (MQ=255)                                                                                                                                                                      taataaCTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAAACAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTgg                                   <  1:30998S3/200‑1 (MQ=255)                                                                                                                                                                       cggtctaataacttcatttattttcctttgtcctcTTTTTTATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACt                                     >  1:247S24‑M1/36‑200 (MQ=255)                                                                                                                                                                           aCTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAAt                             <  1:11981S17/200‑1 (MQ=255)                                                                                                                                                                             ttCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATg                            <  1:19986S24/200‑1 (MQ=255)                                                                                                                                                                               cATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGcc                         <  1:11437S6/200‑1 (MQ=255)                                                                                                                                                                                attt‑atttTCCTTT‑G‑TCCTCTTTTTTT‑‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGGGG‑‑TAGAGGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCa                      >  1:11722S14/1‑200 (MQ=255)                                                                                                                                                                                           cTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTAtt              <  1:15528S15/200‑1 (MQ=255)                                                                                                                                                                                                     cctctttttt‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCtacat      >  1:3901S7/5‑200 (MQ=255)                                                                                                                                                                                                        ttttttt‑ATTTCTGTGAAAAA‑‑CTCTTCTCT‑ATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTacatacat  <  1:19892S23/200‑1 (MQ=255)                                                                                                                                                                                                          |                                                                                                                                                                                                                 CCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGA‑GTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGG‑AACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTT‑ATTTTCCTTT‑G‑TCCTCTTTTTTTT‑ATTTCTGTGAAAAA‑‑CTCTTCTCTTATA‑GGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTT‑‑GGTTCCAAAATTTATATATGATTACTTTCCAA‑CAAAATT‑AAGAGGATTAG‑GGACCGG‑TCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACAT  >  NC_010473/4604588‑4604982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.