| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 4604784 = | 29 (0.760) | 12 (0.320) | 12/388 | 2.9 | 30.3% | coding (896/1218 nt) | nanX | MFS transporter |
| ? | NC_010473 | = 4604780 | 27 (0.720) | coding (892/1218 nt) | nanX | MFS transporter | |||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| Rejected: Unknown rejection reason. | |||||||||||
AGTTGCCCCTAAGTTATAAATAAGACCGGTCCCTAATCCTCTT‑AATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/4604947‑4604784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaa‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTCAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATCTGCCAGGTAGGAAGGAAGTAG < NC_010473/4604780‑4604600 AGTTGCCCCTAAGTTATAAATAAGACCGGTCCCTAATCCTCTT‑AATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAAAGAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCG > 1:247S24/1‑200 CTAAGTTATAAATAAGACCGGTCCCTAATCCTCTTGAATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAAAGAG‑GA‑CAAAGGAAAATAAA‑TGAAGTCATGAGACCGACTACAA < 1:14334S44/200‑1 CCTAATCCTCTT‑AATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑AAGCGA‑TAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTAT > 1:7704S13/1‑200 AATCCTCTT‑AATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAA‑‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCA > 1:8006S7/1‑200 TTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAA < 1:22987S7/200‑1 GTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTAT‑‑‑‑GAAGAGTTTTTCACAGAAATAAAAA‑‑AG‑‑A‑CAA‑GGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTCAG > 1:21345S4/1‑200 TCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGT < 1:1989S10/200‑1 CATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAAAGAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTAT‑ACCAACAAAACCAAAAAAAAATATGGTACCTGTCAGTGTTCCTAA‑CCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTA < 1:30409S7/200‑1 CATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTCAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATC < 1:18040S26/200‑1 acccagTAAGAGAAGAGTTTTTCACAGAAATAAAA‑‑GAG‑GA‑CAA‑GGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTCAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATCTGCCAG < 1:29752S31/194‑1 TATAAGAGAAGAGTTTTTCACAGAAATAAAAAAGAG‑GA‑CAAGCTAAAATAAAATGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAA‑‑‑‑TATTGTACCTGTCAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATCTGCCAGG < 1:25113S10/200‑1 TTCACAGAAATAAAAA‑AAG‑GAGCAAAGGAAAATAAA‑TGAAGTTATTAGACCAACTACAAAGGCTTTTTTTTTACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTGAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATCTGCCAGGTAGaaaaatacggt > 1:6360S1/1‑189 AGTTGCCCCTAAGTTATAAATAAGACCGGTCCCTAATCCTCTT‑AATTTTGTTGGAAAGTAATCATATATAAATTTTGGAACCAACCCTGCAATACCTAAATTTGTAAACATTAATCCAAAGAGACATAATCCTATAAGAGAAGAGTTTTTCACAGAAATAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/4604947‑4604784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaa‑GAG‑GA‑CAAAGGAAAATAAA‑TGAAGTTATTAGACCGACTACAAAGGCTTTTTTT‑‑ACACCAATCTTATCACCAACAAAACCAAAAAA‑‑‑TATTGTACCTGTCAGTGTTCCTAAACCTGCTATTGTCATCAGAGTTGAAATGACCACTGTATTAACTCCATTATCTGCCAGGTAGGAAGGAAGTAG < NC_010473/4604780‑4604600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |