New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	= 3200797	NA (NA)	33 (0.860)	30/398	0.5	97.1%	pseudogene (2/2952 nt)	ECDH10B_RS15940	SslE/AcfD family lipoprotein zinc metalloprotease
	?	NC_010473	= 3632463	1 (0.030)					intergenic (‑112/‑116)	ompR/greB	two‑component system response regulator OmpR/transcription elongation factor GreB

CAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACTTC  >  NC_010473/3200599‑3200993                                                                                                                                                                                                                |                                                                                                                                                                                                            cAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTGAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGc                                                                                                                                                                                                            <  1:19674S67/200‑1 (MQ=11)      gtcggACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTATGCTCAACAGTTCGCTTAGGCATCGGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTa                                                                                                                                                                                                        >  1:30303S24/4‑200 (MQ=11)         ggACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGG‑AATACTTACTCGTGGCTGCAACCCCTGACC‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GT‑‑AAATGATGAGGGGA‑‑T‑CTCTCAGCGtgatgcgt                                                                                                                                                                                                   <  1:12863S41/200‑8 (MQ=11)                      cAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCAcc                                                                                                                                                                                       >  1:10130S43/1‑200 (MQ=31)                         gCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCttt                                                                                                                                                                                    <  1:9866S16/200‑1 (MQ=31)                                 aGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGcc                                                                                                                                                                            >  1:17342S2/1‑200 (MQ=32)                                  gTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCg                                                                                                                                                                           <  1:20063S95/200‑1 (MQ=32)                                  gTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGG‑AAATTATGAGGGGA‑‑TATTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCg                                                                                                                                                                           >  1:3155S8/1‑200 (MQ=17)                                           cGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTTCGGCGGCACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGCAT‑‑T‑TTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCg                                                                                                                                                               <  1:14218S22/200‑1 (MQ=17)                                                         aaCAGTTCGCTTAGGCAT‑GGAAGTTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCAG‑ACTTAGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGt                                                                                                                                                    <  1:29070S5/200‑1 (MQ=18)                                                            aGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTATGA‑CGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAg                                                                                                                                             >  1:3256S4/1‑200 (MQ=18)                                                               tCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAGATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAgg‑g                                                                                                                                          <  1:28287S22/200‑1 (MQ=21)                                                                 gCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑TGACT‑AG‑TCAA‑‑‑CGATTCA‑GCATGGTTACGCTTT‑GGGGAAATTATGAGGG‑A‑‑T‑CTCGCAGCGTTACGCGCG‑TACCGCCACCTTTAACCTGCCGTTT‑‑‑TTATTGCTGGGGCAAGTCGGTGAGG‑GCaaagtca                                                                                                                                  <  1:26176S20/200‑5 (MQ=18)                                                                         aT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATg                                                                                                                                >  1:18576S14/1‑200 (MQ=34)                                                                             gAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGG‑AAAATCTGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTa                                                                                                                            >  1:9585S87/1‑200 (MQ=25)                                                                                      gCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGGGGATA‑‑T‑‑TCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAAc                                                                                                                    >  1:26509S8/1‑200 (MQ=25)                                                                                                  cTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑GCTCACTTCAAAATTTATTCACACATGGTTACGCTTTCAGGCGAAGTGTG‑GGGGA‑‑T‑CTGTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCGCACTaca                                                                                                          >  1:31324S8/1‑200 (MQ=25)                                                                                                                  gAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAAGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGc                                                                                        <  1:23439S13/200‑1 (MQ=38)                                                                                                                      aCTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTAT‑‑GGGGA‑‑T‑CTCTCAGCGTTACGCGCAATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAAc                                                                                  >  1:24138S13/1‑200 (MQ=38)                                                                                                                               tGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCAGTAAGGCGGAACTTGATGGTTATCGGTAACCCACACTACAACAGCATTTTCGAGTTGCCCGAACGGTTa                                                                             >  1:23171S12/1‑200 (MQ=25)                                                                                                                               ctcgtggcgacc‑T‑ACT‑AGCTCGAAATTTATTCACACATGGTTACGCTTT‑GGGAAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACa                                                                           <  1:5921S62/190‑1 (MQ=255)                                                                                                                                  cTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGATCT‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAg                                                                          <  1:11114S15/200‑1 (MQ=38)                                                                                                                                      aaCCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGaa                                                                    <  1:1193S30/200‑1 (MQ=39)                                                                                                                                       aCCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGT‑‑‑‑‑‑CACCACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGc                                                           <  1:18608S133/200‑1 (MQ=38)                                                                                                                                               ct‑aGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGCTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGc                                                           >  1:27310S12/1‑200 (MQ=39)                                                                                                                                                tggcttCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATCAGGA‑A‑‑T‑ATCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCg                                                          >  1:10608S40/6‑200 (MQ=255)                                                                                                                                                     tCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTtaa                                                      <  1:25521S24/200‑1 (MQ=40)                                                                                                                                                     tCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTtaa                                                      <  1:8693S120/200‑1 (MQ=40)                                                                                                                                                              aTTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGA‑A‑‑T‑GTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTTTTTATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGAt                                               >  1:14234S108/1‑200 (MQ=255)                                                                                                                                                                                 tt‑GGGGAAATTCT‑‑GGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGa                        >  1:29588S210/1‑200 (MQ=255)                                                                                                                                                                                      gaaaaTTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGAcc                      <  1:11770S15/198‑1 (MQ=255)                                                                                                                                                                                       gAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGAccc                     <  1:4927S17/200‑1 (MQ=255)                                                                                                                                                                                                  gggA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATga          >  1:21735S20/1‑200 (MQ=255)                                                                                                                                                                                                   ataaggagatgtaGCGTTACGCGCGATACCGCCACCTTTAACCTGC‑GTTT‑‑‑ATTACGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCATTACCCGAACGGTTACAGCTGGAACAAGGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACa             >  1:12S54/13‑200 (MQ=255)                                                                                                                                                                                                     a‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATgaaga       <  1:10117S13/200‑1 (MQ=255)                                                                                                                                                                                                            ctcAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACtt   >  1:10105S9/1‑200 (MQ=255)                                                                                                                                                                                                             tcAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACTTc  <  1:20688S18/200‑1 (MQ=255)                                                                                                                                                                                                                |                                                                                                                                                                                                            CAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCAT‑GGAAGTTTT‑GCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCC‑T‑ACT‑AGCTCAAAATTTATTCACACATGGTTACGCTTT‑GGGGAAATTATGAGGGGA‑‑T‑CTCTCAGCGTTACGCGCGATACCGCCACCTTTAACCTGCCGTTT‑‑‑ATTTCGCTGGGGCAAGTCGGTGAGG‑GCAAACTGATGGTTATCGGTAACCCACACTACAACAGCATTTT‑GCGTTGCCCGAACGGTTACAGCTGGAAC‑‑GGGGGCGTTAATAAAGATGGGCAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAACTTC  >  NC_010473/3200599‑3200993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.