| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 3200797 | NA (NA) | 33 (0.860) | 30/398 | 0.5 | 97.1% | pseudogene (2/2952 nt) | ECDH10B_RS15940 | SslE/AcfD family lipoprotein zinc metalloprotease |
| ? | NC_010473 | = 3632463 | 1 (0.030) | intergenic (‑112/‑116) | ompR/greB | two‑component system response regulator OmpR/transcription elongation factor GreB | |||||
TTGGGACAAGCACTTCCAGGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/3200604‑3200797‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTATCTCACCGAACAAGG < NC_010473/3632463‑3632269 gttGGACAAGCACTTCCAGGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTCT‑‑GGGGA‑T‑CTCTCAG‑TGCTTTGT > 1:17541S9/4‑200 GGACAAGCACTTCCAGGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTA > 1:25915S36/1‑200 CAAGCACTTCCAGGCTAACACAGTCGAGAAATTGAAACG‑GCTCCCCAACAGTTCGCTTAGGCATGGAAGTTTTGTGGTATTTCTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCAACACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTA < 1:16040S1/200‑1 GGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAA < 1:1024S4/200‑1 GGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAA < 1:20925S11/200‑1 GTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAGTTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCC‑AC‑GAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAGGTGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCA < 1:18534S61/200‑1 AATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTA < 1:15993S20/200‑1 ATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAG < 1:11415S27/200‑1 AACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTGC‑CGCCGGCCGCTAACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGG < 1:23737S33/200‑1 AACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGT < 1:8646S137/200‑1 ACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTACCTAGCT‑AAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTG > 1:7564S4/1‑200 TTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTT > 1:27427S81/1‑200 TCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTT > 1:17093S4/1‑200 TCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCC‑AC‑GAGCTCAAAAATTCATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCA‑‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTT < 1:15897S3/200‑1 ATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGCTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATAC < 1:31830S7/200‑1 TGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTT‑GGGGAAAT‑‑TCACGGGAGT‑GTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTT‑‑AAGAATACACGC > 1:14042S31/1‑200 GAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGAAAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACG < 1:8177S15/200‑1 GCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCAT‑CCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTT‑‑AAGAATACACGCTTACAAATT > 1:31987S28/1‑200 ATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTGA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTT < 1:13358S11/200‑1 TACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAATCTTTATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAAC < 1:29205S2/200‑1 taacagaagcTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAA > 1:28607S88/11‑200 TACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAGTTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGACGAGAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCA < 1:14401S4/200‑1 GT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTAT‑AGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTT‑‑AAGAATACACGCTTACAA‑TTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTAC > 1:2081S69/1‑200 TGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTTTAAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACA > 1:25463S3/1‑200 AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTAT‑AGGGGA‑TTGTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTT‑‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATT > 1:18036S30/1‑200 AC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGAAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGT < 1:25616S4/200‑1 TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGG < 1:4758S27/200‑1 AAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGA < 1:17245S27/200‑1 TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGA > 1:11208S40/1‑200 CTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGC < 1:27108S32/200‑1 TGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGG < 1:11487S27/200‑1 GGGGAAATTATGAGGGGA‑T‑CTCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGA > 1:4234S3/1‑200 TCTCAG‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAAT‑GTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTATCTCACCGAACAAGG < 1:9892S19/200‑1 TTGGGACAAGCACTTCCAGGCTAACACAGTC‑AGAAATCGAAACGTACTCTC‑AACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT‑CTGGCTACACAATAACAAGGGAAGACTTACTCGT‑GGCTGC‑AACCCTAC‑TAGCTCAAAA‑TTTATTCA‑CACATGGTTACGCTTTGGGGAAATTATGAGGGGA‑T‑CTCTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/3200604‑3200797‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCTTTGTAACAATTTAGGCTGAAA‑‑TTCATACCAGATTTAGCTGGTGAC‑‑GAACGTGAGCTTTTTT‑AAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAATGCAAGAGAACTACAAGATTCTGGTGGTCGATGACGACATGCGCCTGCGTGCGCTGCTGGAACGTTATCTCACCGAACAAGG < NC_010473/3632463‑3632269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 47 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |