| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_010473 | 2,806,542 | 689 bp→GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGCATGCACGCAGCATATGC | coding (2‑690/690 nt) | ung → | uracil‑DNA glycosylase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_010473 | 2806542 | 2807230 | 689 | 21 [0] | [0] 19 | ung | uracil‑DNA glycosylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 2806541 | 0 (0.000) | 15 (0.610) +GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGCATGCACGCAGCATATGC |
13/256 | 1.2 | 100% | coding (1/690 nt) | ung | uracil‑DNA glycosylase |
| ? | NC_010473 | 2807231 = | 0 (0.000) | intergenic (+1/+47) | ung/yfiF | uracil‑DNA glycosylase/tRNA/rRNA methyltransferase | |||||
ATCTTTGATTTAAATCAATAAAAACCACACATCAAGTATGGTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGATGGCTAACGAATTAACCTGGCATGACGTGCTGGCTGAAGAGAAGCAGCAACCCTATTTTCTTAATACCCTTCAGACCGTCGCCAGCGAGCGGCAGTCCGGCGTCACTATCTACCCACCACAAAAAGATGTCTTTAACGCGTTCCGCTTTACAGAGTTGGGTGACGTTAAAGTGGTGATTCTCGGCCAG > NC_010473/2806340‑2806729 | aTCTTTGATTTAAATCAATAAAAACCACACATCAAGTATGGTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAGG‑‑A‑‑G‑GTGGATTGA‑AGATTCGCAGGAGAGCgaga < 1:1812S2/200‑1 (MQ=255) aaaTCAATAAAAACCACACATCAAGTATGGTCGCAAATGGATTTTATTGTTTT‑CATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgc < 1:6781S7‑M1/200‑11 (MQ=255) aaaCCACACATCAAGTATGGTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACCGAATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgg < 1:27835S207‑M1/200‑19 (MQ=255) tGGTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttct > 1:24699S6‑M1/1‑164 (MQ=255) ggTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGA‑CATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctag > 1:29904S18‑M1/1‑162 (MQ=255) aTGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTACGGAGCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagaata > 1:12855S14‑M1/1‑158 (MQ=255) gggTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCACTATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttg < 1:12743S67‑M1/200‑77 (MQ=255) tttACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATTTGTTTTTCTTGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggagtttctctgatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggtaa < 1:10546S61‑M1/200‑85 (MQ=255) tttACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgc > 1:1907S78‑M1/1‑113 (MQ=255) ttACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcgggaaaatgcc < 1:32087S78‑M1/200‑89 (MQ=255) aCATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggcatgcccggatggcagagt < 1:14235S5‑M1/200‑99 (MQ=255) cACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccgg > 1:5567S2‑M1/1‑91 (MQ=255) gTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcgggggaaatgccggatggcagagttgccacccggctg < 1:2149S1‑M1/200‑115 (MQ=255) ttC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccatt < 1:3103S50‑M1/200‑145 (MQ=255) tGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGAGAGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcaaactgccacccggctgatttatcaggctttattctgacgccaccattcac < 1:9708S93‑M1/200‑147 (MQ=255) aagaagCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagctggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagc < 1:1894S17‑M1/200‑154 (MQ=255) aagaagCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctaaatagaactcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagcaaaacg > 1:23878S24‑M1/1‑47 (MQ=255) aGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagcaaaacgcc < 1:18994S60‑M1/200‑161 (MQ=255) a‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcataggcatattgcgtttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagcaaaacgccggttgcgacagag > 1:14233S10‑M1/1‑31 (MQ=255) g‑gCGGATTGA‑AGATTCGCAGGAGAGCGAGAgagcggccgccaccgcgggaagttcctatactttctagagaataggaacttcgcgtgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagcaaaacgccggttgcgaca > 1:723S1‑M1/1‑30 (MQ=255) aGGAGAGCGAGAgagcggccgccaccgcgggagttcaatactttctagagaataggaacttcgcatgcacgcagcatatgcatttgcggggaaatgccggatggcagagttgccacccggctgatttatcaggctttattctgacgccaccattcaccaagcaaaacgccggttgcgacagagatattcagcccggcaac < 1:29180S16‑M1/200‑189 (MQ=255) | ATCTTTGATTTAAATCAATAAAAACCACACATCAAGTATGGTCGCAAATGGATTTTATTGTTTTACATCAACTTATGCGGGTGTGAAATTTTACC‑AATTTACATTTTTTTGCACTCGTTTAAGTCTAAAAAATGAGCATGATT‑‑TTGTTC‑TGTAGAAAGAAGCAGTTAAGCTA‑‑G‑GCGGATTGA‑AGATTCGCAGGAGAGCGAGATGGCTAACGAATTAACCTGGCATGACGTGCTGGCTGAAGAGAAGCAGCAACCCTATTTTCTTAATACCCTTCAGACCGTCGCCAGCGAGCGGCAGTCCGGCGTCACTATCTACCCACCACAAAAAGATGTCTTTAACGCGTTCCGCTTTACAGAGTTGGGTGACGTTAAAGTGGTGATTCTCGGCCAG > NC_010473/2806340‑2806729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 49 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |