Notebook

01st, January to 06th, January

Project

1. hold the first ice-breaking meeting

Maxence: Finance/Modelo
Margaux: Entrepreneurship
Romane: Wiki/Modelo
Thomas: Experimentation /Wiki
Romain: Human Practices
Camille: Organisation/Communication

07th, January to 13th, January

Project

We continued the brainstorming effort and began holding more meetings per week.

14th, January to 20th, January

Project

1. One online meeting:

note sharing
topic discussion and decision

2. Meeting with supervisors:

experience sharing and matters reminding

21st, January to 27th, January

Project

1. One online meeting:

note sharing
topic discussion and decision

2. Online Group meeting:

ice-breaking
work assigning

28th, January to 03rd, February

Project

1. One online meeting:

note sharing
topic discussion and decision

2. Team Registration and Members Registration:

04th, February to 10th, February

Project

1. One online meeting:

note sharing
topic discussion and decision
arrange the communication with teachers

2. Education:

set up our own WeChat public account

11th, February to 17th, February

We took the Spring Festival break!

18th, February to 24th, February

Project

1. One offline meeting:

conclude the notes made before
put foward possible topics by members
group discussion

2. Integrated Human Practice -- Consulting with professors:

consult Professor Wei Ting for advice

consult Professor Feng Yan for advice

design questionnaires

3. Education:

publish an article to introduce our team

25th, February to 02nd, March

Project

1. One offline meeting:

put foward possible topics by members
consult with advisors

2. Four offline group meeting:

Back-end group: Topic sharing and discussing
Front-end group: Excellent wiki sharing and discussing
Human practice group: timeline drawing of HP works for the new semester
Design group: Excellent logo sharing and discussing

3. Education:

design questionnaires
consult Professor Wang Tao for advice

consult Professor Xue Xiaoli for advice
consult Professor Bai Linquan for advice

03rd, March to 09th, March

Project

1. Search for informations about previous possible topics

2. One offline meeting:

discuss the communication with teachers
one team meeting to discuss previous possible topics

3. Integrated Human Practice -- Consulting with professors:

consult Professor Chen Haifeng for advice

10th, March to 16th, March

Project

1. One offline meeting:

confirm our final topic -- HEATAP!

learn about relavant literature to confirm the feasibility of the topic

2. Three offline group meetings:

Back-end group: Project designing
Human Practice group: SJTUer's Day planning
Design group: Stamp books, keychains designing

3. Integrated Human Practice:

find out enterprise that is relevant to our project
distribute questionnaire at the school's party

4. Education:

distribute questionnaire at the school's party

17th, March to 23rd, March

Project

1. Integrated Human Practice -- Consulting with professors:

communicate with the professor in relavant field teacher Lu Hongzhong
communicate with team tutor teacher Zhang Yue

send messages to relevant enterprise to understand the circumstance in the real producing progress

learn about relavant literature to confirm the feasibility of the topic

2. Project Implementation:

study relavant knowledge
search for relevant documents

3. Four offline group meeting:

Human Practice group: SJTUer's Day planning
Design group: Memory cards, and various cartoon characters designing
Back-end group: Share relevant documents
Front-end froup: Learn relevant wiki developing methods

24th, March to 30th, March

Project

1. Project Implementation:

communicate with wetlab group and get the genome
communicate with wetlab group and learn about basic information of the bacteria
search for relevant documents

2. One offline meeting:

team plan fomulating for this semester
project designing
document sharing

3. Two offline froup meetings:

Human Practice group: Prepare for host the visit of Shanghai Shixi Middle School
Design group: Prepare for the SJTUer's Day

4. Education:

get in touch with some iGEM teams for collaboration

31st, March to 06th, April

Project

1. One offline meeting:

ask tutors for advice
plan confirming

2. Project Implementation:

communicate with professeor Bai Linquan to formulate the final plan
search for relevant documents

3. Collaboration:

communicate with Jiuzhou Pharmaceutical Company

4. Education:

produce an article to promote our project through the WeChat public account
participate in SJTUer's Day

receive students from Shanghai Shixi Middle School

07th, April to 13th, April

Project

1. One offline meeting:

work deviding and distributing

2. Project Implementation:

collect protein data from multiple resouces

search for possible deep learning models

3. Collaboration:

present project plan and goal to Jiuzhou Pharmaceutical Company

14th, April to 20th, April

Project

1. Project Implementation:

further search for more data
further search for more models

2. One offline group meeting:

Back-end group: Share and dicuss the results of data and model

3. Collaboration:

sign a contract with Jiuzhou Pharmaceutical Company

21st, April to 27th, April

Project

1. Project Implementation:

data processing
futher research on information of models

2. One offline group meeting:

Back-end group: Conclude data and possible model

3. Integrated Human Practice:

get in touch with other iGEM teams

28th, April to 04th, May

Project

1. Project Implementation:

yield over 8,000 raw data points after the initial screening process
start to conduct the construction of deep learning models

2. One offline group meeting:

Back-end group: Share the information of models

05th, May to 11th, May

Project

1. Project Implementation:

construct the ProtFlsh based model

consult teacher Lu Hongzhong about GEM model

2. One offline group meeting:

Back-end group: Discuss the methods used to process data in the next step

3. Education:

plan and draw a picture book with five iGEM teams

12th, May to 18th, May

Project

1. Project Implementation:

construct and test the ProtFlsh based model
reconstruct the GEM model
fill out safety form

2. Two offline group meetings:

Front-end group: Make a schedule for the wiki development
Design froup: design our team uniform

19th, May to 25th, May

Project

1. Project Implementation:

optimize the ProtFlsh based model

reconstruct the GEM model
check the safety form

2. Integrated Human Practice:

communicate with ECUST

3. Education:

produce an article to introduce Spinosade in the WeChat public account

26th, May to 01st, June

Project

1. Project Implementation:

construct the ESM2 based model
reconstruct and test the GEM model
collect more data from literature
further processing of data

2. One offline group meeting:

Back-end group: Share the progress of processing data

3. Education:

do researches on picture book

02nd, June to 08th, June

Project

1. Project Implementation:

test the ESM2 based model

construct Saprot based model
reconstruct and test the GEM model
use custom scripts to further process data

2. Integrated Human Practice:

look for possible and available enterprise that we can visit

3. One offline group meeting:

Back-end group: Share the progress of processing data
Human Practice Group: Share information about possible and available enterprise

09th, June to 15th, June

Project

1. Project Implementation:

collect 6,090 valid data points eventually
construct and test Saprot based model

construct Hyena based model
test the GEM model

2. Integrated Human Practice:

get in touch to available enterprise
make the schedule of enterprise visit

16th, June to 22nd, June

Project

1. Project Implementation:

optimize the ESM2 based model
test Hyena based model

construct ecGEM model

2. Select the village -- Software&AI!

3. Integrated Human Practice:

discuss with Professor Jiang Qun about ethics in synthetic biology

23rd, June to 29th, June

Project

1. One online meeting:

set up plan for summer break
integrate progress of each group
ask tutors and advisors for suggestion

2. Project Implementation:

test the ESM2 based model

optimize Hyena based model
construct ecGEM model

3. One offline group meeting:

Back-end group: Integrate each members' progress
Design group: confirm our team logo, project logo, and team pannant

4. Education:

volunteer in student enrollment
make a promotion video of actinomycetes

30th, June to 6th, July

Project

1. One online meeting:

mid-term presentation of HEATMAP

2. Project Implementation:

test optimized Hyena based model

construct ecGEM model

3. Integrated Human Practice:

visit Mengniu diary company

7th, July to 13th, July

Project

1. Project Implementation:

test ecGEM model

search for methods of verifying the deep learning model

2. Integrated Human Practice & Education:

participate in CCiC
do project presentation to domestic iGEM teams
communicate with domestic iGEMers

14th, July to 20th, July

Project

1. Project Implementation:

construct etcGEM model
prepare meterials for experiment

2. One online group meeting:

Back-end group: Select and optimize best wet lab method
Human Pratice group: work distribution

3. Integrated Human Practice:

send emails to the United Nations to consult with agricultural problems worldwide

21st, July to 27th, July

Project

1. Project Implementation:

optimize etcGEM model
conduct wetlab experitment

construct the website of deep learning

2. Education:

do investigation and survey about picture books among young children in Anhui Tongdu Bookstore
do investigation and survey about picture books among young children in Anhui Xinhua Bookstore
Human Pratice group: work distribution

3. Collaboration:

reach a cooperation with State Key Laboratory of Microbial Metabolism- Bai group

28th, July to 3rd, August

Project

1. Project Implementation:

test etcGEM model

conduct wetlab experitment
construct the website of database

2. Four Online group meeting:

Front-end group: Confirm the style and essencial element of wiki
Back-end group: Summerize works that have done this month and make a future plan
Human Practice group: Arrange the work that have done logically and distribute wiki writting tasks
Design group: Summerize and discuss the design of elements

4th, August to 10th, August

Project

1. Project Implementation:

construct the website

2. Integrated Human Practice:

visit Chenghua Biology

11th, August to 17th, August

Project

1. Project Implementation:

construct the gitlab work
refine the files of backend

18th, August to 24th, August

Project

1. Project Implementation:

construct the website

2. One online meeting:

summerize and integrate each groups' work

3. Collaboration:

give a project presentation to BGI genomics company and receive precious suggestions

25th, August to 31st, August

Project

1. Project Implementation:

make the readme files

2. Integrated Human Practice:

communicate with Imperial-College

3. Education:

do investigation and survey about picture books among young children in Sichuan Children's Press

1st, September to 7th, September

Project

1. Project Implementation:

fill out the safety form
communicate with other group members to make wiki

8th, September to 14th, September

Project

1. Project Implementation:

combine the work files with wiki
write relavant articles

2. Integrated Human Practice:

consult with Qilu Pharma

15th, September to 21st, September

Project

1. Project Implementation:

check the igem forms

2. Integrated Human Practice:

produce the picture book

22nd, September to 28th, September

Project

1. One offline meeting:

give a presentation of HEATMAP
ask tutors and advisors for suggestion
take team photos

2. Project Implementation:

check all the works

29th, September to 5th, October

Project

check all the works