Part1: Overview

For this year's program, we used a total of 112 parts, including 48 basic and 64 composite parts. Most of these components were designed by ourself, and all of them have been tested to insure their reliability. You can click here to learn more about how we design, optimize these parts, or click on the part numbers when browse website to learn more about our programs.

Our favorite composite parts are BBa_K5157103, BBa_K5157098, and BBa_K5157114, for they can most significantly improve the degradation efficiency of PETase.

Part2: Basic Parts

We used both LSTM and graph neural network (GCN) models to optimize the prediction of high-affinity PET-binding peptides. For further improvement, we used Mutcompute-super to introduce beneficial mutations at specific sites, in order to improve the expression level of the fusion protein and the degradation ability of the microplastic substrate by molecular modification.

Design Name Type Description
BBa_K5157011 Coding PETase
From 2023NNU-CHINA BBa_K4790075 T7 T7 promoter
BBa_K4790079 RBS RBS
BBa_K4790078 Coding lac operator
BBa_K4790076 Teminator T7 terminator
BBa_K4790077 Tag His tag
From iGEM23_CPU-CHINA BBa_K4990005 Coding EAAAK linker
BBa_K5157012 Coding G4S linker
BBa_K5157013 Coding Tr linker
BBa_K5157014 Coding AG linker
BBa_K5157015 Coding 10A linker
BBa_K5157016 Coding SLE linker
BBa_K5157017 Coding eGFP
BBa_K5157018 Coding PET-binding peptide 40-1
BBa_K5157019 Coding PET-binding peptide 40-2
BBa_K5157020 Coding PET-binding peptide 40-3
BBa_K5157021 Coding PET-binding peptide 40-4
BBa_K5157022 Coding PET-binding peptide 50-1
BBa_K5157023 Coding PET-binding peptide 50-3
BBa_K5157024 Coding PET-binding peptide 50-4
BBa_K5157025 Coding PET-binding peptide 50-5
BBa_K5157115 Coding PET-binding peptide 60-1
BBa_K5157026 Coding PET-binding peptide 60-2
BBa_K5157027 Coding PET-binding peptide 60-3
BBa_K5157028 Coding PET-binding peptide 60-4
BBa_K5157029 Coding PET-binding peptide 70-1
BBa_K5157116 Coding PET-binding peptide 70-2
BBa_K5157031 Coding PET-binding peptide 70-3
BBa_K5157032 Coding PET-binding peptide 70-4
Molecular modification BBa_K5157030 Coding PET-binding peptide 50-4-R4D
BBa_K5157033 Coding PET-binding peptide 50-4-S14A
BBa_K5157034 Coding PET-binding peptide 50-4-V19I
BBa_K5157035 Coding PET-binding peptide 50-4-L23K
BBa_K5157036 Coding PET-binding peptide 50-4-Y33F
BBa_K5157037 Coding PET-binding peptide 50-4-S61A
BBa_K5157038 Coding PET-binding peptide 50-5-I283V
BBa_K5157039 Coding PET-binding peptide 50-5-R287V
BBa_K5157040 Coding PET-binding peptide 50-5-C293V
BBa_K5157041 Coding PET-binding peptide 50-5-R301V
BBa_K5157042 Coding PET-binding peptide 50-5-A325S
BBa_K5157043 Coding PET-binding peptide 60-2-L7F
BBa_K5157044 Coding PET-binding peptide 60-2-A13S
BBa_K5157045 Coding PET-binding peptide 60-2-S26D
BBa_K5157046 Coding PET-binding peptide 60-2-N29D
BBa_K5157047 Coding PET-binding peptide 60-2-R32K
BBa_K5157048 Coding PET-binding peptide 60-2-L44I
BBa_K5157049 Coding PET-binding peptide 60-2-Q55L
BBa_K5157050 Coding PET-binding peptide 60-2-L60I

Part3: Composite Parts

After performed PET-binding peptide prediction with the help of deep learning, we then fused PETase with the efficient binding peptide obtained from the prediction and screening through linker to construct a fusion protein, so as to improve the binding ability of PETase to PET microplastics with the help of PET-binding peptide, thus improving the degradation efficiency. We also characterized the binding ability of PET-binding peptides to PET plastics with the help of eGFP.

Design Name Type Description Plasmid
Fermentation optimization BBa_K5157051 Coding 50-4-N-G4S-PETase pET-21b
BBa_K5157052 Coding PETase-G4S-40-1-C pET-21b
BBa_K5157053 Coding PETase-G4S-40-2-C pET-21b
BBa_K5157054 Coding PETase-G4S-40-4-C pET-21b
BBa_K5157055 Coding PETase-G4S-50-1-C pET-21b
BBa_K5157056 Coding PETase-G4S-50-5-C pET-21b
BBa_K5157057 Coding PETase-G4S-60-2-C pET-21b
BBa_K5157058 Coding PETase-G4S-60-3-C pET-21b
BBa_K5157059 Coding PETase-G4S-60-4-C pET-21b
BBa_K5157060 Coding PETase-G4S-70-1-C pET-21b
BBa_K5157061 Coding PETase-G4S-70-4-C pET-21b
BBa_K5157062 Coding 40-1-N-G4S-PETase pET-21b
BBa_K5157063 Coding 40-3-N-G4S-PETase pET-21b
BBa_K5157064 Coding 40-4-N-G4S-PETase pET-21b
BBa_K5157065 Coding 50-1-N-G4S-PETase pET-21b
BBa_K5157066 Coding 50-3-N-G4S-PETase pET-21b
BBa_K5157067 Coding 60-2-N-G4S-PETase pET-21b
BBa_K5157068 Coding 70-1-N-G4S-PETase pET-21b
BBa_K5157069 Coding 70-3-N-G4S-PETase pET-21b
Characterization of binding capacity BBa_K5157070 Coding 50-4-N-G4S-eGFP pET-20b
BBa_K5157071 Coding 50-5-C-G4S-eGFP pET-20b
BBa_K5157072 Coding 60-2-N-G4S-eGFP pET-20b
Linker optimization BBa_K5157073 Coding PETase-Tr-70-1-C pET-21b
BBa_K5157074 Coding PETase-AG-70-1-C pET-21b
BBa_K5157075 Coding PETase-10A-70-1-C pET-21b
BBa_K5157076 Coding PETase-EAAAK-70-1-C pET-21b
BBa_K5157077 Coding PETase-SLE-70-1-C pET-21b
BBa_K5157078 Coding PETase-SLE-40-1-C pET-21b
BBa_K5157079 Coding PETase-SLE-40-2-C pET-21b
BBa_K5157080 Coding PETase-SLE-40-4-C pET-21b
BBa_K5157081 Coding PETase-SLE-50-1-C pET-21b
BBa_K5157082 Coding PETase-SLE-50-5-C pET-21b
BBa_K5157083 Coding PETase-SLE-60-2-C pET-21b
BBa_K5157084 Coding PETase-SLE-60-3-C pET-21b
BBa_K5157085 Coding PETase-SLE-60-4-C pET-21b
BBa_K5157086 Coding PETase-SLE-70-4-C pET-21b
BBa_K5157087 Coding 40-1-N-SLE-PETase pET-21b
BBa_K5157088 Coding 40-3-N-SLE-PETase pET-21b
BBa_K5157089 Coding 40-4-N-SLE-PETase pET-21b
BBa_K5157090 Coding 50-1-N-SLE-PETase pET-21b
BBa_K5157091 Coding 50-3-N-SLE-PETase pET-21b
BBa_K5157092 Coding 50-4-N-SLE-PETase pET-21b
BBa_K5157093 Coding 60-2-N-SLE-PETase pET-21b
BBa_K5157094 Coding 70-1-N-SLE-PETase pET-21b
BBa_K5157095 Coding 70-3-N-SLE-PETase pET-21b
BBa_K5157096 Coding 50-4-N-R4D-G4S-PETase pET-21b
BBa_K5157097 Coding 50-4-N-S14A-G4S-PETase pET-21b
Our favorite composite parts BBa_K5157098 Coding 50-4-N-V19I-G4S-PETase pET-21b
BBa_K5157099 Coding 50-4-N-L23K-G4S-PETase pET-21b
BBa_K5157100 Coding 50-4-N-Y33F-G4S-PETase pET-21b
BBa_K5157101 Coding 50-4-N-S61A-G4S-PETase pET-21b
BBa_K5157102 Coding PETase-G4S-50-5-C-I283V pET-21b
Our favorite composite parts BBa_K5157103 Coding PETase-G4S-50-5-C-R287V pET-21b
BBa_K5157104 Coding PETase-G4S-50-5-C-C293V pET-21b
BBa_K5157105 Coding PETase-G4S-50-5-C-R301V pET-21b
BBa_K5157106 Coding PETase-G4S-50-5-C-A325S pET-21b
BBa_K5157107 Coding 60-2-N-L7F-SLE-PETase pET-21b
BBa_K5157108 Coding 60-2-N-A13S-SLE-PETase pET-21b
BBa_K5157109 Coding 60-2-N-R32K-SLE-PETase pET-21b
BBa_K5157110 Coding 60-2-N-S26D-SLE-PETase pET-21b
BBa_K5157111 Coding 60-2-N-N29D-SLE-PETase pET-21b
BBa_K5157112 Coding 60-2-N-L44I-SLE-PETase pET-21b
BBa_K5157113 Coding 60-2-N-Q55L-SLE-PETase pET-21b
Our favorite composite parts BBa_K5157114 Coding 60-2-N-L60I-SLE-PETase pET-21b
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