Enzymes

By Vidhi Chauhan | 5 September 2024

Without enzymes, biochemical reactions would simply not occur fast enough for life to exist. Enzymes are what allow life to be as feasible as it is today. /p>

Enzymes are catalysts that work in biological systems. Catalysts are substances that speed up reactions by lowering their activation energy (energy that a reactant must possess for the reaction to proceed). Enzymes speed up biochemical reactions. They are mostly proteins, but some RNA also show catalytic capacity — these are called ribozymes.

How do enzymes work? The essence lies in the structure of each enzyme. Every enzyme is shaped to fit a specific reactant of a specific reaction. This reactant is called a substrate. The enzyme then changes the structure of this attached substrate, which changes the pathway of the reaction in a way that activation energy decreases. The earlier consensus was that enzymes have a “lock and key” model – the enzymes are rigid and attach to the substrate like a key fitting in a lock. But 60 years ago, the biochemist Daniel Koshland proposed the “induced fit” model – the enzymes change their shape for better attachment to their respective substrates.

Enzymes work in a very specific pH and temperature range. Any change in the environment can lead to the enzyme becoming denatured – the shape of the enzyme gets distorted, sometimes irreversibly.

The enzymes are classified using a four level classification system. Each enzyme has a code consisting of four numbers separated by periods, each number corresponding to a level in the system. This code is called the Enzyme Commission Number (EC Number). The first level consists of seven major enzyme classes, which are:

  1. Oxidoreductases: These catalyse the transfer of electrons, hydrogen or oxygen from one substance to another. These reactions are called oxidation reactions
  2. Transferases: These catalyse the transfer of functional groups (part of a molecule that has a characteristic chemistry). For example, kinases transfer the phosphate group from one molecule to another. This process is called phosphorylation.
  3. Hydrolases: These catalyse the cleavage of substances in the presence of water.
  4. Lyases: These catalyse the cleavage of substances without water.
  5. Isomerases: These catalyse isomerisation processes. Isomerisation refers to the change in the arrangement of atoms in a molecule.
  6. Ligases: These catalyse the combination of two substances and the formation of new bonds. For instance, DNA ligase combines two DNA strands and is used in the replication and repair of DNA.
  7. Translocases: These catalyse the transfer of substances across membranes.

An interesting class of enzymes called polymerases help in DNA replication. They are involved in a process called Polymerase Chain Reaction (PCR). They are different from ligases in that they can join two single nucleotides together, while ligases can only join longer polynucleotide strands.

References

  1. Britannica, T. Editors of Encyclopaedia (2023, March 20). polyvinylidene chloride. Encyclopedia Britannica.
  2. Dagmar Ringe, Gregory A. Petsko, How Enzymes Work. Science Volume 320 (2018)
  3. Moss GP. "Recommendations of the Nomenclature Committee". International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes by the Reactions they Catalyse.

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