Team Heidelberg

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Integrated Human Practices

PICasSO: Shaping Science with Society

We empower future scientists. Hence, we needed to connect with the community that will ultimately benefit from our PICasSO system and gather their input to meet their specific needs and expectations.
In 23 expert interviews, we gained valuable insights on how our project impacts the world. Each perspective helped refine our approach—whether by improving our project concept, optimizing lab constructs, enhancing our model, or shaping our educational initiatives. Every input was carefully considered and integrated into our work.
These insights allowed us to adjust the PICasSO system to serve both science and society better, ensuring it is not only scientifically sound but also aligned with the real-world needs of modern society.

Industry Insights on DNA Origami and Future Innovations

Prof. Dr. Kerstin Göpfrich
Portrait of Göprich

Professor at the Center for Molecular Biology
University of Heidelberg

Main Takeaways

Prioritized gene regulation through dsDNA proximity

Shifted focus from DNA origami to protein-based approach

Introduced environmental factors into staple design

Enhancing DNA-Protein Hybrids

Prof. Dr. Kurt Vesterager Gothelf
Portrait of Vesterager Gothelf

Professor of Chemistry
Aarhus University, Denmark

Main Takeaways

Explore triplex DNA formation as a readout method

Implement labeled protein staples or FRET-based readouts for nanostructure detection

Leverage the advantages of proteins in DNA-protein hybrids for functional improvements

Replicate successful stabilization strategies from other scientists

Industry Insights on DNA Origami and Future Innovations

Dr. Sumersing Patil
Portrait of Dr. Sumersing Patil

Tilibit Nanosystems

Main Takeaways

In vivo production does not offer significant advantages over in vitro

DNA origami is well-established but constrained by structure size

Initiated exploration of protein staples and versatile readout methods

Optimizing Molecular Dynamics Simulations

Dr. Fabian Grünewald
Dr. Fabian Grünewald

Independent postdoc at
Heidelberg Institute for Theoretical Studies (HITS)

Main Takeaways

Learned how to significantly improve the runtime of our simulations

Gained insights on the correct implementation of umbrella sampling for the project

Acquired crucial knowledge on parameters and water models for accurate project implementation

Refining Plasmid Simulations

Dr. Erik Poppleton
Dr. Erik Poppleton

Lead Developer oxDNA

Main Takeaways

Coarse-grained simulation tools are optimal for modeling larger DNA structures

Learned about a specific force type for simulating staple forces on DNA

Dr. Poppleton's insights helped refine the plasmid stapling process

Optimizing Bacterial Conjugation

Dr. Christian Lesterlin
Dr. Christian Lesterlin

INSERM Director of Research and Group Leader
CNRS-MMSB

Main Takeaways

Improving conjugation efficiency should focus on increasing cellular proximity

The selected conjugation system is feasible and promising for bacterial conjugation research

Consider expressing synthetic adhesins on the bacterial surface, rather than modifying the T4SS

Refining Conjugation Experiments

Dr. Marta Robledo
jane_doe

Postdoctoral Researcher in Conjugation and Genomics,
University of Cantabria

Main Takeaways

Carefully differentiate between liquid and solid-media conjugation to assess environmental impact

Design experiments with sufficient negative controls to exclude random effects during conjugation

Explore the idea that cell contact, rather than cell type, might be the limiting factor for conjugation

Refining Experimental Design

Dr. Abdelhakim Boudrioua
Dr. Abdelhakim Boudrioua

Expert in Small Molecule Inhibitors
Targeting Salmonella Virulence

Main Takeaways

Explore potential inhibitors that disrupt key virulence factors

Design experiments to deliver reliable results

choose established conjugative machinery, rather than creating a new system to ensure a solid foundation for experiments

Ensuring Biosafety in Genetic Engineering

Dr. Timo Kehl
Dr. Timo Kehl

Head of Biosafety
German Cancer Research Center

Main Takeaways

Ensure lab safety and containment by using E.coli K-12 strains

Avoid transferring toxins and minimize off-target effects

Avoid close sequence homology to oncogenes or tumor suppressor genes

Insights on Enhancer Hijacking and Chromosomal Interactions

Prof. Dr. Carl Herrmann
Prof. Dr. Carl Hermann

Professor for Bioinformatics
Institute of Pharmacy and Molecular Biotechnology (IPMB)
University of Heidelberg

Main Takeaways

CRISPR technology can be used to manipulate specific chromosomal interactions

Insights from Carl Herrmann on Enhancer Hijacking and Chromosomal Interactions

Exploring cell lines and datasets like HI-C will enhance research, and connecting with other experts will provide further support

Enhancer Hijacking in Cancer

PD Dr. Frank Westermann
Portrait of PD Dr. Frank Westermann

Head of Neuroblastoma Genomics
German Cancer Research Center

Main Takeaways

Enhancer hijacking can be induced in specific cell types, like stem cells, for research purposes

Circular extrachromosomal DNA (Amplikons) play a central role in enhancer hijacking in tumors

Our project could help develop model cell lines to study oncogene expression and tumor suppressor gene activation in cancer research

Refining 3D Chromatin Folding

Prof. Dr. med Stefan Mundlos
Prof. Dr. med Stefan Mundlos

Director of the Institute for Medical and Human Genetics
Charité – University Medicine Berlin

Main Takeaways

Experimentally validate proximity-induced gene regulatory mechanisms

Explore limitations in 3D chromatin folding and enhancer-promoter interactions

Expand expertise by consulting additional experts

Effective Science Communication and Education

PD Dr. Dorothea Kaufmann
PD Dr. Dorothea Kaufmann

Private Lecturer in Biology and its Didactics
Heidelberg University of Education

Main Takeaways

Use short, precise communication and emphasize unique aspects of the project

Promote workshops through student associations and local communities for broader outreach

Design survey questions with psychology experts to ensure clarity and effectiveness

Optimizing Survey Design

Prof. Dr. Markus Bühner
Prof. Dr. Markus Bühner

Chair of Psychological Methods and Diagnostics
Ludwig Maximilian University of Munich

Main Takeaways

Aim for a minimum sample size of 250 participants

Conduct a pre-test survey to select appropriate questions for knowledge assessment

Use structured questions, like a Likert scale, for quantifiable data

Enhancing Workshop Engagement

Prof. Dr. Armin Baur
Prof. Dr. Armin Baur

Professor of Biology and Biology Education
University of Education Heidelberg

Main Takeaways

Use structured lesson plans with diverse media for deeper engagement

Minimize frontal lecture time and promote interactive discussions

Highlighting our project and experiences to spark students' interest

Designing Engaging Science Workshops for Children

Prof. Dr. Ulrike Graf
Prof. Dr. Ulrike Graf

Professor of Educational Science
University of Education Heidelberg

Main Takeaways

Incorporate hands-on experiments and group activities for active learning

Consistency in visual elements and explanations is key for understanding

Carefully structure lectures by activity, with frequent breaks to ensure attention

Refining Educational Initiatives

PD Dr. Dorothea Kaufmann
PD Dr. Dorothea Kaufmann

Private Lecturer in Biology and its Didactics
Heidelberg University of Education

Main Takeaways

Critically evaluate our program and position it within Germany's education system

Equip people with the tools and information to think critically about complex scientific topics

Feedback on the Dream Organism Competition

Dr. Katja Naie
Dr. Katja Naie

Executive Director at Schering Stiftung

Main Takeaways

Refine instructions to ensure clarity and accessibility for students

Run the Dream Organism Competition with a small group and simplified outreach efforts before scaling up

Empowering STEM Education

Laura Krauß
Laura Krauss

Project Manager of Make Your School

Main Takeaways

Provide accessible, cost-free educational opportunities for diverse student groups

Connect with networks supporting the modernization of STEM education in Germany

Overcome stereotypes by integrating teamwork and problem-solving skills

Driving STEM Education Forward

Benjamin Gesing
Benjamin Gesing

Managing Director of MINT Zukunft e.V.

Main Takeaways

Focus on creating hands-on, engaging programs that inspire long-term interest in STEM fields

Foster partnerships with organizations promoting STEM education to amplify outreach

Ensure inclusivity by making programs accessible to diverse student groups

Feedback on Science Communication and Teaching Methods within our Projects

Dr. Stephanie Scherer, Dr. Karin Freitag, Dr. Sara Weckemann
Federal Ministry of Education and Research

Project Managment Agency of the Federal Ministry of Education and Research,
specifically Department for Empirical Educational Research at the German Aerospace Center (DLR)

Main Takeaways

Incorporate diversity and clear science communication in program design

Align teaching methods with specific educational goals for better outcomes

Ensure explanations connect with students' everyday experiences and challenges

Addressing Gaps in STEM Education

Ida Sagner
Ida Sagner

Academic Director of the Hector Kinderakademie Heidelberg

Main Takeaways

More STEM teachers with strong science backgrounds are needed in schools

Broader outreach is essential, targeting a wider range of schools for greater impact

Better lab equipment and a "lab atmosphere" would boost student engagement in science

Feedback on Extracurricular Opportunities and Real-World Insights

Anonymous
jane_doe

High School Teacher

Main Takeaways

Practical courses and real-world research insights are highly valued by teachers

Limited STEM hours in middle school affect students' learning

Extracurricular STEM activities offer students more focused and motivated learning opportunities