| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 1455332 = | 43 (1.120) | 31 (0.870) +CGTTACTGGTTTCAT |
23/368 | 0.9 | 45.6% | coding (1/978 nt) | pspF | phage shock protein operon transcriptional activator |
| ? | NC_010473 | 3365613 = | 37 (0.970) | intergenic (+244/+370) | yhaC/rnpB | YhaC family protein/RNase P RNA component class A | |||||
TCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTC > NC_010473/3365421‑3365810 | tCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACccgc < 1:15149S14/200‑1 (MQ=38) gtgCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGt > 1:2202S18/1‑200 (MQ=38) gtgCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGG‑‑‑ACGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGttt > 1:3298S59/1‑200 (MQ=38) cctaatgttgtcctcttgatttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggttgcatatAAACCCGCCGGa‑a > 1:1227S18‑M2/188‑200 (MQ=255) ctaatgttgtcctcttgatttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaatttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttat‑AACCCGCCGGA‑ACGGttt < 1:22367S8‑M2/18‑1 (MQ=255) ttgtcctcttgatttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTtta > 1:10755S30‑M2/181‑200 (MQ=255) aaGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAG‑GCGCTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTa > 1:19550S14/1‑200 (MQ=37) cctcttgatttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagtttgttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTttatt > 1:1058S61‑M2/179‑200 (MQ=255) gttgtcctcttgatttctgagttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaaaaataaggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTttatta > 1:475S14‑M2/178‑200 (MQ=255) tgtatcttgatttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTAc > 1:27534S19‑M2/177‑200 (MQ=255) aaaCTCACTGACGCGGGTTTCTAACTCATGG‑‑ACC‑CAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGt < 1:2424S2/200‑1 (MQ=25) atttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaaaaatcctcggcgacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACAt < 1:10777S27‑M2/30‑1 (MQ=255) atttctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttatttggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCa > 1:14813S24‑M2/169‑200 (MQ=255) aCGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTaaaccga < 1:24499S7/200‑5 (MQ=37) ctgcgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTacgtacatgagaggt < 1:22769S1‑M2/37‑8 (MQ=255) cgttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAAc > 1:6967S3‑M2/161‑200 (MQ=255) ttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatggattagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTg > 1:19473S5‑M2/159‑200 (MQ=255) ttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTg > 1:25727S54‑M2/159‑200 (MQ=255) gttcaggcttgtcctgctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatctcggccacatgccggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGAGACGGTTTATTACGTACATCAGGTAAAACTg > 1:7502S15‑M2/158‑200 (MQ=255) ttgaaactgatgacctgaaaaaTGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGcc < 1:16266S8/183‑1 (MQ=37) ctgaactgttaacacaatttgcgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGctt > 1:29928S18‑M2/144‑200 (MQ=255) ccGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTggg < 1:16856S151/200‑1 (MQ=38) aaaaaTGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTCGGT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGta < 1:18052S6/200‑1 (MQ=38) aacgcaaggttaacgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagtgagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTgg > 1:10240S21‑M2/136‑200 (MQ=255) aaaTGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAgt < 1:11265S19/200‑1 (MQ=38) gCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCg < 1:9072S10/200‑1 (MQ=38) cgtgccaattttttatctttttgatttataaagatctgattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTg > 1:12745S25‑M2/123‑200 (MQ=255) cTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGtca > 1:8607S5/1‑200 (MQ=38) tACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGtcat < 1:21449S19/200‑1 (MQ=39) aCGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGtcatt < 1:7120S7/200‑1 (MQ=39) ttATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCGCTCGAACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGtcattcat > 1:15692S32/1‑200 (MQ=38) cAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGCGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTc < 1:22171S44/200‑1 (MQ=39) ccTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑c‑c > 1:12799S9/1‑200 (MQ=39) tACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATCGTGTCGTGGACAGTCATTCATCTTTCT‑G‑c‑ccc > 1:11669S13/1‑200 (MQ=39) cGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑Tc < 1:7526S5/200‑1 (MQ=39) gCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCCCGCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑Tc < 1:23152S21/200‑1 (MQ=38) cATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCaa > 1:24185S72/1‑200 (MQ=38) ctctGCAATATATTGA‑TCTTCGTGTTTTT‑‑GTTAGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTTCTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAg > 1:13691S1/1‑200 (MQ=25) agatctgattgaagaaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCaaa < 1:1041S92‑M2/108‑1 (MQ=255) gattgaagaatcttcggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTT‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTaa > 1:14009S22‑M2/86‑200 (MQ=255) attgaagaatcttcggccacgtgccgggatagagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTaaaa > 1:29495S3‑M2/86‑200 (MQ=255) tGCGTGCTTTT‑‑GT‑CAGCGGGATTAAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCg > 1:12469S19/1‑200 (MQ=25) atctttggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAA‑‑‑TAAAAACCCGCCGAAGc < 1:22529S6‑M2/124‑1 (MQ=255) cGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGaatgggtt < 1:7874S13/200‑7 (MQ=37) cggccacgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCgg > 1:693S17‑M2/72‑200 (MQ=255) cTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGttttt > 1:15844S7/1‑200 (MQ=37) acgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCC‑‑AAGTAAAAACCCGCCGAAGCGGGTTTTTa < 1:19608S5‑M2/134‑1 (MQ=255) cgtgccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCC‑AAAGTAAAAACCCGCCGAAGCGGGTTTTTa < 1:8090S8‑M2/135‑1 (MQ=255) gT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTa < 1:19417S41/200‑1 (MQ=35) gccgggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCC‑AAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGt < 1:7498S11‑M2/138‑1 (MQ=255) ggatgagttagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTCACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTaaa < 1:11659S11‑M2/142‑1 (MQ=255) tagcgaattacactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGCGTTTTAA‑TGTAAAA‑CAGGTGa < 1:27182S50‑M2/150‑1 (MQ=255) aGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAA‑‑CAGGTGAAAc > 1:30575S7/1‑200 (MQ=25) cGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAA‑‑GTAA‑‑‑GCCGCCGAAGCGGGTTTTTAATGTAAAA‑CAGGTGAAACTGACCg < 1:6168S35/200‑1 (MQ=25) aCGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CC‑‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAA‑‑CAGGTGAAACTGACCGATa > 1:3324S8/1‑200 (MQ=21) cgcc‑acATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAGA‑GTAAAAACCCGCCGAAGCGGGTTTTTA‑‑GTAAAA‑CAGGTGAAACTGACCGATag > 1:3614S14/1‑199 (MQ=21) gcc‑gcATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAA‑‑GTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAG‑CAGGTGAAACTGACCGATAAg < 1:32473S53/200‑1 (MQ=21) cactaacaagtggcgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCT‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCg > 1:32008S19‑M2/41‑200 (MQ=255) ccGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGCGAAACTGACCGATAAGCCGct < 1:27698S18/200‑1 (MQ=21) cgaatttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCCCTTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGcttt > 1:28288S5‑M2/28‑200 (MQ=255) tttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCAATAAGCCGCTTTCTTTTg > 1:20664S36‑M2/24‑200 (MQ=255) tttcatcacgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGAG‑‑TTTG‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:5884S12‑M2/24‑200 (MQ=255) tAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:25392S2/1‑200 (MQ=33) acgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg > 1:13535S30‑M2/17‑200 (MQ=255) cgttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTTACCGAT‑‑GCC‑‑‑TTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGt < 1:19201S66‑M2/185‑1 (MQ=255) ttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCC‑G‑C‑CCC‑‑TCC‑‑AAGTAAAAACCCGCCAAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCg < 1:27006S35‑M2/187‑1 (MQ=255) ttactggtttcatAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTCGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt < 1:18637S7‑M2/187‑1 (MQ=255) cTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTc > 1:22167S3/1‑200 (MQ=33) tagaacaaTCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTT‑GGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCg > 1:29053S13/4‑200 (MQ=18) tC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTT‑‑‑‑‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGa > 1:8399S9/1‑200 (MQ=18) cTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAg > 1:1025S25/1‑200 (MQ=17) atAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CATAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCttttgggtatagcattgccgtgg > 1:2039S195‑M2/3‑189 (MQ=255) atAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑GCC‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGt > 1:20877S6‑M2/3‑200 (MQ=255) aaaCCCGCCGGA‑ACGGTTTATTACGTACATCAGGCAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTCG‑CTCTC‑‑TCCCAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtc < 1:10635S7/200‑1 (MQ=17) | TCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTT‑‑GT‑AGGCAGGAT‑AAGGCGTTCACGCC‑GCATCCGGCATGAATAAAGCGCACTC‑AACAATCTGAAACCCGCCGGA‑ACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTC‑‑‑TTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCT‑G‑C‑CCC‑‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTA‑CGTAAAA‑CAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTC > NC_010473/3365421‑3365810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |