New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	3816235 =	NA (NA)	36 (0.950)	33/394	0.3	94.8%	intergenic (‑35/‑45)	hokA/ECDH10B_RS25725	type I toxin‑antitoxin system toxin HokA/IS3‑like element IS150 family transposase
	?	NC_010473	4028795 =	2 (0.050)					intergenic (+4/‑163)	kup/rbsD	low affinity potassium transporter Kup/D‑ribose pyranase

CTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAA  >  NC_010473/3816045‑3816434                                                                                                                                                                                                   |                                                                                                                                                                                                            ctcttactcttTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCAccc                                                                                                                                                                                                    >  1:31390S1/1‑200 (MQ=255)      actcttTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑tttt                                                                                                                                                                                              >  1:9685S84/1‑200 (MQ=255)             cAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑Ac                                                                                                                                                                                     >  1:14503S8/1‑200 (MQ=255)                               cgccgcCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGGTGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCTGCTG‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGc                                                                                                                                                                     >  1:23398S29/1‑200 (MQ=255)                                  cgccAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTa                                                                                                                                                                <  1:13069S7/200‑1 (MQ=255)                                      aGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCT‑‑GGCACTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATg                                                                                                                                                           <  1:6855S5/200‑1 (MQ=39)                                           aTAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATAATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCa                                                                                                                                                        >  1:2551S16/1‑200 (MQ=40)                                              aCTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGc                                                                                                                                                    <  1:9005S2/200‑1 (MQ=40)                                                        ttAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTGATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc                                                                                                                                          >  1:5229S55/1‑200 (MQ=39)                                                        ttAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAccc                                                                                                                                          >  1:11174S81/1‑200 (MQ=39)                                                         tAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                                                                                                                         >  1:11529S15/1‑200 (MQ=39)                                                           atatGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCttt                                                                                                                                       <  1:7931S72/200‑1 (MQ=39)                                                                cAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGaaa                                                                                                                                 <  1:5250S2/200‑1 (MQ=39)                                                                        acaGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCtt                                                                                                                         <  1:32047S6/200‑1 (MQ=38)                                                                         caGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAG‑ACGGA‑TCCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGaa                                                                                                                      <  1:3572S32/200‑1 (MQ=37)                                                                              aaTCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTc                                                                                                                   >  1:21754S9/1‑200 (MQ=38)                                                                                              gg‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTca                                                                                                   >  1:18626S43/1‑200 (MQ=37)                                                                                               g‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCGGTTTTCTTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTc                                                                                                    >  1:571S65/1‑200 (MQ=37)                                                                                                  gAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACaa                                                                                                <  1:1624S9/200‑1 (MQ=35)                                                                                                     aaaTAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtg                                                                                             <  1:27262S12/200‑1 (MQ=35)                                                                                                          aaa‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTgatgat                                                                                        <  1:4671S23/200‑1 (MQ=35)                                                                                                                           cACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatcatc                                                                         >  1:24752S4/1‑200 (MQ=21)                                                                                                                                ttAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAACGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTGACAGGATCATCTCGGCa                                                                   <  1:18767S156/200‑1 (MQ=21)                                                                                                                                   aagaaagTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGt                                                                <  1:24526S50/200‑1 (MQ=33)                                                                                                                                             tCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTG‑‑A‑‑ATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGCGTccccc                                                   <  1:27842S6/200‑1 (MQ=18)                                                                                                                                                       tCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑‑GAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAAccc                                             >  1:11477S8/1‑200 (MQ=17)                                                                                                                                                         tGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCa                                            >  1:7090S32/1‑200 (MQ=32)                                                                                                                                                          gCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑‑GAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAgg                                          >  1:20191S35/1‑200 (MQ=17)                                                                                                                                                            ggCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGt                                         >  1:5545S32/1‑200 (MQ=32)                                                                                                                                                               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAg                                      <  1:7524S19/200‑1 (MQ=32)                                                                                                                                                                                            gAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑‑GAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATgg        >  1:31197S22/1‑200 (MQ=11)                                                                                                                                                                                                aTGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATTAAATAGCCC‑TAATATGTCAAAGCCAAAATACCCTTTCAGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCGTC‑‑‑GCACGTTTTGGCGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGaaaa  <  1:8833S21/200‑1 (MQ=11)                                                                                                                                                                                                   |                                                                                                                                                                                                            CTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGG‑TGAAAAATAAAA‑GCGTGAAACAAATCACTATTAAAGAAAGTAATCT‑ATA‑TTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCA‑TTTT‑GTTGG‑ACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT‑TGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAA  >  NC_010473/3816045‑3816434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 49 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.