| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 3170326 | 0 (0.000) | 40 (1.050) | 37/396 | 0.2 | 100% | pseudogene (294/1257 nt) | cmtA | PTS mannitol transporter subunit IICB |
| ? | NC_010473 | 3225914 = | NA (NA) | coding (33/1137 nt) | yghO | protein YghO | |||||
GCGGATAATAGACGCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCCC > NC_010473/3170148‑3170519 | gCGGATAATAGACGCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctg > 1:24112S164‑M1/1‑179 (MQ=255) cGGATAATAGACGCCGGGATTGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAG‑‑‑AAA‑GGgaaggtgcgaacaagtccctgata < 1:23935S7‑M1/200‑25 (MQ=255) ggATAATAGACGCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgat < 1:17183S9‑M1/200‑24 (MQ=255) cGCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcat < 1:18560S14‑M1/200‑34 (MQ=255) gCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatg < 1:26160S39‑M1/200‑35 (MQ=255) tGATCGATCGCATTATTGAGGGCAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttg < 1:23601S8‑M1/200‑39 (MQ=255) gatcgatcGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaaatccagtacgagatcatgtttgtca < 1:14217S109‑M1/200‑40 (MQ=255) gCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:28129S21‑M1/1‑153 (MQ=255) attattGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc > 1:26806S23‑M1/1‑151 (MQ=255) ttattGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:28871S5‑M1/1‑150 (MQ=255) attGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTC‑AAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata < 1:5848S41‑M1/200‑54 (MQ=255) ggAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac > 1:29777S42‑M1/1‑143 (MQ=255) aaaGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAA‑ACATGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg < 1:21627S43‑M1/200‑61 (MQ=255) aCTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:4340S24‑M1/200‑66 (MQ=255) ttCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca < 1:29785S17‑M1/200‑69 (MQ=255) ttCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACG‑A‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat < 1:29491S141‑M1/200‑70 (MQ=255) ccGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag > 1:22629S1‑M1/1‑128 (MQ=255) ccGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTC‑AT‑‑ACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑‑AA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat < 1:24335S13‑M1/200‑77 (MQ=255) tgatgaCTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact > 1:9504S151‑M1/1‑119 (MQ=255) tgactgacAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAAGACT‑TTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac > 1:5464S31‑M1/1‑116 (MQ=255) tgactgacAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATCAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac > 1:5441S8‑M1/1‑116 (MQ=255) gactgacAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatacagtgtttgtcatctggagccatagaacaggctcatcatgagtcatcaacttac > 1:27927S6‑M1/1‑115 (MQ=255) aGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaat < 1:27367S3‑M1/200‑102 (MQ=255) gCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatggaatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta > 1:30903S34‑M1/1‑90 (MQ=255) cATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa < 1:9636S9‑M1/200‑112 (MQ=255) tGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataagacgggttcatcatgagtcatcaacttaccttcacgacagtgaattcagcagtaagcgc > 1:14901S21‑M1/1‑87 (MQ=255) tACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGACAAAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcg < 1:24240S64‑M1/200‑115 (MQ=255) tACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc > 1:11629S10‑M1/1‑85 (MQ=255) ccAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtagtgctgt < 1:23242S1‑M1/200‑118 (MQ=255) tttGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt < 1:14495S12‑M1/200‑137 (MQ=255) tGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaaatcccttgatatgagattatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcatacgagaaaagagattt < 1:29708S63‑M1/200‑139 (MQ=255) aGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatagagatcatgtttgtcatctggagccatagaacagggttcatatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaagagattttcttgt > 1:29588S59‑M1/1‑55 (MQ=255) tATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc > 1:27381S81‑M1/1‑53 (MQ=255) c‑cgccgGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattct < 1:22624S13‑M1/200‑163 (MQ=255) gCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgctgaagcagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccgac < 1:29935S2‑M1/200‑170 (MQ=255) aaCTTCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaac > 1:29941S15‑M1/1‑25 (MQ=255) cTTCAAAACCCAGCAGAC‑AAAGGGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaaca < 1:12957S10‑M1/200‑177 (MQ=255) tCAAAACCCAGCAGAC‑AAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatgg < 1:19011S41‑M1/200‑180 (MQ=255) aaaCCCAGCAGAC‑AAA‑GGgaaggtgtgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtgg < 1:16903S28‑M1/200‑183 (MQ=255) gc‑aAA‑GGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggaacatggtggaagtcatcgagccg < 1:10175S7‑M1/199‑194 (MQ=255) | GCGGATAATAGACGCCCTGATCGATCGCATTATTGAGGAAAAGCACTTTCGCCGGTTCATTGATGACTGACAACAATGGCAGATAACCCGCATGTACCAGCGCCTCAATACACTCTTTGACGAA‑AGTATTGGCAATTAACAC‑CGCCGGGCCGATAACTTCAAAACCCAGCAGAC‑AAA‑GGAGCATCCCCGCGATACCTAATGAGAAGTTATTGATAACCATCTCAAAACCGGCAGGTATGCGTTTTTCCAGTGCCTTATCGACATATTTTATGACCAACCCACCGAGCGGCCCCATGATCATTGAGCCAAGGAACATCGGGATCTCTGCGCCAACGATCACACCAATAGTACCTATTCCGCCCATGACCGCCC > NC_010473/3170148‑3170519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |