| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 3211929 = | NA (NA) | 30 (0.790) | 27/396 | 0.7 | 93.8% | pseudogene (1/603 nt) | nupG | nucleoside permease NupG |
| ? | NC_010473 | 3632455 = | 2 (0.050) | intergenic (‑104/‑124) | ompR/greB | two‑component system response regulator OmpR/transcription elongation factor GreB | |||||
ACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/3212117‑3211929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTAATTATCTCTGGCGTGAAGA > NC_010473/3632455‑3632652 ACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATA < 1:27427S75/200‑1 gttagAGCTGTTAAGTAGTTTTAAGTGTAATTAGGGGCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATTCCT‑GGGG‑A‑T‑TCATCAGTAC‑AAAGC > 1:15897S9/6‑200 TTGAGTCGTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATTGACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGG‑‑‑A‑A‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGC > 1:23737S39/1‑200 GTCGTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTA > 1:8646S143/1‑200 GTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTAT‑‑AAATTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGGGA‑T‑TGATGGGCTC‑AAAGCATATT‑AAACAGCAGCTTAAGTA > 1:11415S33/1‑200 GGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCGTCGGT‑T‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGA > 1:1024S10/1‑200 GCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAA > 1:20925S17/1‑200 AGAATTGGTAAAG‑GAGTCGT‑‑‑AAATATTGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑AAT‑TCATCGGTCC‑GAAGCAT‑TC‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTA > 1:16040S7/1‑200 GAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCT < 1:25915S30/200‑1 GTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTG < 1:17541S3/200‑1 TAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATAGTTAGGGG‑A‑TCTCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATG > 1:30214S39/1‑200 TCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTT > 1:548S2/1‑200 CATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGT > 1:9892S26/1‑200 CTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCA > 1:27108S39/1‑200 TGATTATTGATTTTTGGCGAAACCATTTGATCATCT‑GACAGAGATCTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCA > 1:11487S34/1‑200 AAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAAC < 1:11208S33/200‑1 ATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGAT > 1:17245S34/1‑200 TGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAA > 1:26576S7/1‑200 ATCATAT‑GACA‑AGATGTGTATGTTCCTTTAACTTAATGATTTTGATAAAAATCGTT‑GGGG‑A‑T‑TCGTCAGTAC‑GAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGAATCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAA > 1:4758S34/1‑200 GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTCATTCTGTCGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCT < 1:18036S23/200‑1 TGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCG < 1:2081S62/200‑1 CTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACCGGCAAAAGGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACC‑GGGAAG > 1:14401S11/1‑200 AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGA < 1:28607S81/200‑1 ATAAAAATCAT‑‑GGGG‑A‑T‑TCATCAGTACGCAAGCGTATTCAAACGGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCGTTGTCGAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGA > 1:29205S9/1‑200 aaatcgttGGGG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTA > 1:13358S18/9‑200 GG‑A‑T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTAATTATCTCTG < 1:31987S21/200‑1 T‑TCATCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAA‑‑CT‑AAA‑GAGAGCTTAATTATCTCTG‑CGTGAAt < 1:14042S24/200‑2 TCAGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATGAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTAATTATCTCTGGCGTGAA > 1:31830S14/1‑200 AGTAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTAATTATCTCTGGCGTGAAGA < 1:4150S9/200‑1 GTAC‑AAAGCGTGTT‑GAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTATCTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACGAACAAA‑GGGAATCAACGAGATGAAAAACGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACGACTCTTTAATTATCTCTGGCGTGAAGA > 1:8177S22/1‑200 ACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATT‑‑‑‑‑CGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATAT‑GACA‑AGATGTGTATCTACCTT‑AACTTAATGATTTTGATAAAAATCATTAGGGG‑A‑T‑TCATCAGt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/3212117‑3211929‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAC‑AAAGCATATT‑AAACAGCAGCTTAAGTATACAATTTATTCGGCGAAACATTATTGATTCTGTTGATATGA‑TCACGTTATACCCAATGTGCGCATTATCAAACAGACAAA‑GGGAATCAACGAGATGAAAA‑CGCCCCTGGTTACCCGGGAAGGGTATGAAAAACTCAAACAAGAGCTTAATTATCTCTGGCGTGAAGA > NC_010473/3632455‑3632652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 49 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |