| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 1118039 | 3 (0.080) | 31 (0.810) | 29/396 | 0.6 | 91.2% | coding (853/1257 nt) | yccE | YccE family protein |
| ? | NC_010473 | 3211929 = | NA (NA) | pseudogene (1/603 nt) | nupG | nucleoside permease NupG | |||||
TTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1117843‑1118039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTA > NC_010473/3211929‑3212113 TTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAAT‑CATTTACAAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATCCGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAC > 1:14551S6/1‑200 TTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAGT‑‑C‑ATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGA < 1:1697S26/200‑1 AACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCC < 1:30001S40/200‑1 TGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTA < 1:853S35/200‑1 TGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCAAGGACTATTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCT > 1:24396S19/1‑200 TATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATTTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGA > 1:11266S55/1‑200 TCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTT > 1:18695S22/1‑200 GGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTAT < 1:6650S8/200‑1 GCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAA‑‑TGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATAAATCCCCTAATGATTTTTATCAAA > 1:16550S20/1‑200 TCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCAT > 1:21084S41/1‑200 CAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATT < 1:27754S22/200‑1 CAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAaggaga < 1:16544S1/200‑7 AGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACGATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACA > 1:30163S51/1‑200 CGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATAT > 1:14222S2/1‑200 ATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTT < 1:19211S6/200‑1 GGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACCGACGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCG < 1:23138S63/200‑1 GTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGC < 1:17880S2/200‑1 ACGATCGAGG‑CTCTTGTTGATACGGTATTTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAAT < 1:32173S10/200‑1 TCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGG‑CAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTT‑GCCTAAAATgataattatat < 1:25141S41/200‑12 GAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGA > 1:17030S2/1‑200 AGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGAC > 1:5380S36/1‑200 CTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAA > 1:30088S26/1‑200 ATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTA‑GGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTT < 1:7554S10/200‑1 TAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGAC‑‑GGAATTGTGC‑AACTCGATATTTTAC > 1:23164S88/1‑200 GATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCT > 1:7759S36/1‑200 AAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGAgttctcttacc > 1:22794S3/1‑189 TTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCC‑AACGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCC < 1:15964S21/200‑1 GCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAA < 1:20785S48/200‑1 ACAACCAAATTCAGG‑‑CAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATA‑ATATCTTGTCATATGATCAA‑TGAGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTC‑ATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAA‑CGACTCAACAG < 1:31201S26/200‑1 ACCAAATTCAGGGGCAGAGTACTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAA‑TGAGTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAAC < 1:31264S27/200‑1 ATTCAGGGGCAGAGTACTGATAAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCAATATTGCAC‑CGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTA > 1:24283S32/1‑200 TTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATT‑‑‑AAAATGGTTGATAAAAAAACGATCGAGG‑CTCTTGTTGATACGGCATT‑CTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1117843‑1118039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCTGATGAATCCCCTAATGATTTTTATCAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATG‑GTTTCGCCAAAAATCAATAATCAGACAACAAAATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTA > NC_010473/3211929‑3212113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |