| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_010473 | 4,658,880 | 0 | T | C | 37.5% | 58.0 / 34.3 | 41 | intergenic (+135/+285) | yjjV/yjjW | metal‑dependent hydrolase/YjjW family glycine radical enzyme activase |
| Reads supporting (aligned to +/- strand): ref base T (18/7); new base C (5/10); total (23/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.35e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGT > NC_010473/4658685‑4659062 | ggcggATGAGATTGCGCAAGCGTTGCTTAATAACACGTCTGC‑‑‑GTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGcac > 1:26832S38/1‑200 (MQ=18) ggATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGCGCCGTAGGCCGGATAAGGCGTTGACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑G‑‑‑‑CGA‑CCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGGTCG‑GCGCACAAt < 1:8188S7/200‑1 (MQ=21) aagtagaTTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGcaca > 1:7900S43/5‑200 (MQ=21) aTGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACaa < 1:15666S7/200‑1 (MQ=34) gcAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGc > 1:323S38/1‑200 (MQ=33) ttcTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTGACGC‑‑ATTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTc > 1:8761S59/3‑200 (MQ=17) acaaattctcgcgccacccGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTCGT‑‑GCG‑CA‑GATGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑AACGCT‑GACGCGTC‑‑‑‑‑‑‑TTATCagac > 1:2475S21/18‑197 (MQ=2) gttTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CAGACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACaa < 1:764S90/200‑1 (MQ=17) tttAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑g > 1:24229S36/1‑200 (MQ=32) ttAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCGGCATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑g > 1:19333S16/1‑200 (MQ=17) acccGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTGGCATGCTTCGCAGTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACaaattct > 1:31922S16/3‑195 (MQ=2) cACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGT‑C‑GAACCGTAGGCCGGATAA‑GGCg > 1:22316S5/1‑200 (MQ=17) aCGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTACGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAAAGT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCg > 1:12584S25/1‑200 (MQ=17) cg‑cATCCGGCAGTCGT‑‑GCG‑CA‑GATGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAA‑TGC‑GTGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCAcg < 1:32027S6/200‑1 (MQ=2) tccggcagtcgtgcgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTA‑AA‑TT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCa < 1:1959S76/182‑1 (MQ=2) ttG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGAATGCCGACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGCGCTAAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATc < 1:32573S10/200‑1 (MQ=17) g‑‑‑gCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAg > 1:26551S85/1‑200 (MQ=32) agtcgtgcgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCg < 1:22890S9/188‑1 (MQ=2) tcgtgcgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATTCTCGCGC‑C‑ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGGCCTACAA‑ATTCCC‑GCGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGc > 1:280S3/11‑200 (MQ=2) tcgtgcgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGc < 1:24231S32/190‑1 (MQ=2) gtgcgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAg < 1:3180S58/192‑1 (MQ=2) gcg‑cACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGt > 1:6875S15/1‑200 (MQ=32) cgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATTCTCGCGC‑C‑ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGGCCTACAA‑ATTCCC‑GCGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑g < 1:30953S3/195‑1 (MQ=2) cgcagaTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GACGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑g < 1:28620S14/195‑1 (MQ=2) acaATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑gc > 1:25996S7/1‑200 (MQ=32) aTGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATTCTCGCGC‑C‑ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGGCCTACAA‑ATTCCC‑GCGC‑C‑ATCCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑gtgcg > 1:285S11/1‑196 (MQ=2) tGCCTGATGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAA‑AT‑‑TT‑ACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑gtgctggga < 1:27323S24/200‑9 (MQ=2) tGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATg > 1:17914S23/1‑200 (MQ=32) aTGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATTCTCGCGC‑C‑ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGGCCTACAA‑ATTCCC‑GCGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑GTGCGCagatgcc < 1:496S2/200‑7 (MQ=2) tGCGACGCT‑AACGCGTCTTATCAGGCCTACAAATT‑C‑CCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGACCTACAAATT‑‑CTCACGC‑C‑‑ATCCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑gtgctgggatgggc > 1:10160S18/1‑187 (MQ=0) aCGCGTCTTATCAGGCCTACAAATT‑C‑GCGC‑C‑ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCA‑GATGCCTGA‑TGC‑GACGCT‑AACGCGTC‑‑‑‑‑‑‑TTATCAGGCCTACAA‑ATTCCC‑GCGC‑C‑‑ATCCGTAGGCCGGATAAAGGCGTTCACGCCGCATCCGGCAGTC‑‑GTGCGCA‑GATGCCTGATGCGACGCt < 1:19201S149/200‑1 (MQ=2) cgcgTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCtt > 1:8183S8/1‑200 (MQ=32) ccTACAGGTT‑T‑GTGC‑CGGACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCa < 1:15240S23/200‑1 (MQ=17) cTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCCTATCAt > 1:11331S4/1‑200 (MQ=17) aCAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGc < 1:8104S94/200‑1 (MQ=32) cAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGcc < 1:27075S58/200‑1 (MQ=32) aaccgttgggCCGGATAAGGCATTAGCGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTCTTGTGGTTTATTATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTCCGG‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGTCTAc > 1:4332S65/9‑200 (MQ=14) aTAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGcc < 1:4727S8/200‑1 (MQ=32) gCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATa > 1:11548S43/1‑200 (MQ=32) gTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑AAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAg > 1:21091S46/1‑200 (MQ=17) aCGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGt > 1:9452S39/1‑200 (MQ=32) | GGCGGATGAGATTGCGCAAGCGTTGCTTAATAACACGTATACGTTGTTTAACGTGCCGTAGGCCGGATAAGGCGTTCACGCCG‑CATCCGGCAGTTG‑‑‑GCG‑CACAATGCCTGATGCGACGCTTAACGCGTCTTATCATGCCTACAGGTT‑T‑GTGC‑CGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TTG‑GCGCACAATGCCTGA‑TGC‑GACGCTTGTCGCGTC‑‑‑‑‑‑‑TTATCATGCCTACAA‑GT‑‑CT‑GTGC‑C‑GAACCGTAGGCCGGATAA‑GGCGTTCACGCCGCATCCGGCAGTC‑‑G‑GCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGT > NC_010473/4658685‑4659062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 49 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |