| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_010473 | 1,455,380 | 0 | T | C | 31.2% | 111.3 / 58.3 | 64 | intergenic (‑48/‑119) | pspF/pspA | phage shock protein operon transcriptional activator/phage shock protein PspA |
| Reads supporting (aligned to +/- strand): ref base T (20/24); new base C (15/5); total (35/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.34e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAA > NC_010473/1455185‑1455578 | gCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGCCTGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGtt < 1:32563S12/200‑1 (MQ=255) aGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGttatt > 1:27188S21/1‑197 (MQ=255) gcggcTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCG‑GATAAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGt < 1:11795S2/200‑1 (MQ=255) ggcTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCGGAAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCA‑GTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCTGAA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGtt > 1:14581S11/1‑200 (MQ=255) cAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGAtt‑‑‑ctt > 1:29801S3/1‑200 (MQ=255) cAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAAt > 1:14237S46/1‑200 (MQ=255) aGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATc < 1:28773S62/200‑1 (MQ=255) aGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATc < 1:13596S151/200‑1 (MQ=255) ttttacttttggaggggcagaaagatgaatgactgtccacgacactatacccaaaagaaagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑CTATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAAt > 1:29495S3‑M1/131‑200 (MQ=255) ttacttttggaggggcagaaagatgaatgactgtccacgacactatacccaaaaaagaaagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATc > 1:14009S22‑M1/131‑200 (MQ=255) ttACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCt > 1:22184S21/1‑200 (MQ=255) tACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCtt > 1:24547S31/1‑200 (MQ=255) ccGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTta < 1:30859S34/200‑1 (MQ=255) tttggaggggcagaaagatgaatgactgtccacgacactatacccaaaagaaagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATTT‑‑CTTCAATC‑AGA‑TCt < 1:1041S92‑M1/77‑1 (MQ=255) ccGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATa < 1:12996S20/200‑1 (MQ=255) cGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATaa > 1:9423S25/1‑200 (MQ=255) gatgaGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATaaaaaa < 1:29469S16/200‑1 (MQ=255) aCCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCAc > 1:18093S4/1‑200 (MQ=255) tttGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATC‑‑‑TTTCAACCCAGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCaa < 1:28882S5/200‑1 (MQ=255) cacgacactatacccaaaagaaagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACg > 1:12745S25‑M1/94‑200 (MQ=255) tGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAAtt > 1:18965S24/1‑200 (MQ=255) gcggtgTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTAt > 1:17291S1/6‑200 (MQ=255) aGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCACCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTAtt > 1:14626S99/1‑200 (MQ=255) cGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTaa < 1:16405S65/200‑1 (MQ=255) gTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAG‑GTGAAATCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTggtatcgac < 1:28338S6/200‑9 (MQ=255) gtgcgatccG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑TTTTTTGG‑TTCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTAtt > 1:15427S10/9‑200 (MQ=255) ccaaaagaaagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑CA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATaaaaaattggcacgttaaccttgcgtt > 1:10240S21‑M1/81‑187 (MQ=255) cGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTTTTAACaagt > 1:29509S13/1‑197 (MQ=255) cGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AAAAGATCAATAAATCAAAACAG‑TAAAAAATTGGCACGCAAATTGTATTAACAGt < 1:3597S19/200‑1 (MQ=255) aagcggcttatcggtcagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTcag > 1:29928S18‑M1/73‑200 (MQ=255) aaaCCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGAc > 1:14880S21/1‑200 (MQ=255) aCCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAATAAATTATCTTTGTATTTTCTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTG‑‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACa < 1:28958S26/200‑1 (MQ=255) cagttttacctgatgtacgtaataaaccgtctccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCC‑GG‑CATGTGG‑‑‑‑‑CCGA‑GATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAAc > 1:7502S15‑M1/59‑200 (MQ=255) cagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑T‑‑‑‑C‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGaa > 1:19473S5‑M1/58‑200 (MQ=255) cagttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGaa > 1:25727S54‑M1/58‑200 (MQ=255) gttttacctgatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACg > 1:6967S3‑M1/56‑200 (MQ=255) acctctcatgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAg < 1:22769S1‑M1/148‑1 (MQ=255) ga‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCaa > 1:1016S41/1‑200 (MQ=255) ga‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGGATGAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCaa < 1:5326S6/200‑1 (MQ=255) tgatgtacgtaataaaccgttccggcgggtttatgaaaccaaataacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAAt > 1:14813S24‑M1/49‑200 (MQ=255) atgtacgtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTCG‑‑‑‑‑CCGAGGATTTTTCTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAAt < 1:10777S27‑M1/155‑1 (MQ=255) gtaataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAatcaa‑gataca > 1:27534S19‑M1/40‑196 (MQ=255) taataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CC‑TT‑ATT‑‑‑TTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACTCAGAAATCAA‑GAGGacaac > 1:475S14‑M1/39‑200 (MQ=255) aataaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑CAAACT‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAATCAA‑GAgg > 1:1058S61‑M1/38‑200 (MQ=255) taaaccgttccggcgggtttatgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AAAAC‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAATCAA‑GAGGacaa > 1:10755S30‑M1/36‑200 (MQ=255) tCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTAt < 1:23069S21/200‑1 (MQ=255) aaaccgttccggcgggttataaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAA‑TTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAATCAA‑GAGGACAACATtag < 1:22367S8‑M1/168‑2 (MQ=255) ttccggcgggtttatatgcaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAATCAA‑GAGGACAACAttagg > 1:1227S18‑M1/31‑198 (MQ=255) ttATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGGGCATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAACAGGACAATCCTGAACGCAGAAATCAAAGAGGACAACATTATGGGTAttttt < 1:25272S13/200‑1 (MQ=255) atgaaaccagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGAAatcaa‑gaggacaacattaggccaataggcggagtg < 1:10635S8‑M1/185‑18 (MQ=255) gaaacgagtaacgTGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCCGG‑CACGTGG‑‑‑‑‑CCGAAGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTGTTAACAGTTCAGCAGGACAAGCCTGAACGCAGaaatcaa‑gaggacaacattaggccaaataggccgtaagg > 1:20877S5‑M1/14‑181 (MQ=255) tt‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCg > 1:21062S37/1‑200 (MQ=255) gaAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATg > 1:6727S76/1‑200 (MQ=255) aaTTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGcc < 1:32043S12/200‑1 (MQ=255) aCTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCaa < 1:11509S43/200‑1 (MQ=255) tGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGc < 1:9760S5/200‑1 (MQ=255) ttAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAA‑TTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGttct > 1:16554S76/1‑200 (MQ=255) ttCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAgaga > 1:15512S3/1‑200 (MQ=255) cGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTGCGGCTCTGTCGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTag < 1:14619S23/200‑1 (MQ=255) a‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCGTAAC‑CAAGAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGag < 1:15537S47/200‑2 (MQ=255) t‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCA‑‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGa < 1:5662S33/200‑1 (MQ=255) c‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTA‑GAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGAt < 1:6720S16/200‑1 (MQ=255) tCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATc < 1:17717S13/200‑1 (MQ=255) aTGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGaa < 1:29426S20/200‑1 (MQ=255) | GCAGGCGGCTGGCAATCAGCTCTTTACCGGTGCCGCGTTCGCCGATGATGAGCACCGGTTTGTCCAGCGGTGCGAGATGCG‑AAACCTGTTCCAGCACTTCGAGA‑AAGC‑TGTTCGCCTCACCAAGTAAATTATCTTTGTATT‑‑CTGCCATGATGAAATTCGCCACTTGTTAGTGT‑AATTCGCT‑AA‑‑C‑‑‑‑T‑‑‑‑‑‑C‑ATCCTGG‑CATGTTG‑‑‑‑‑CTGTTGATT‑‑‑CTTCAATC‑AGA‑TCTTTATAAATCAAAA‑AGATAAAAAATTGGCACGCAAATTGTATTAACAGTTCAGCAGGACAATCCTGAACGCAGAAATCAA‑GAGGACAACATTATGGGTATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAA > NC_010473/1455185‑1455578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |