Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_010473 | 1155447 | 1160082 | 4636 | 14 [13] | [13] 14 | [ycdZ]–[ymdA] | [ycdZ],csgG,csgF,csgE,csgD,csgB,csgA,csgC,[ymdA] |
CAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCC > NC_010473/1159948‑1160282 | atattcatatggaccttgttgAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAATG‑AAG‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGc > 1:25771S39/16‑200 (MQ=255) tattcatatggaccttgttgAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTg < 1:6524S18/186‑1 (MQ=255) tatggaccttgttgAAATATCGAGCATAAGATGAAT‑‑‑‑‑GAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATTCGTGGA‑‑C‑‑AGA‑A‑TAA‑CGTTC‑‑ACAATCTTTAA‑CCCTCA‑GTG‑CT‑GGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAgggg < 1:11946S75/192‑1 (MQ=255) gAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑AGTAAATATTAAGACCTTTTT‑AAACTCTCTTATG‑CTCGGCAGTTTGTTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATc > 1:25918S24/1‑200 (MQ=255) tCTGGAGAGAATGGTCTGCTGCGGATAACCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAATGAAGATA‑GAAATCTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTAt > 1:12733S5/1‑200 (MQ=255) gagaatagttgtctgcG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTT‑‑‑CCT‑‑‑‑TTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCg > 1:10956S13/13‑200 (MQ=255) agaATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTgg > 1:5378S7/1‑200 (MQ=255) gTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCgg < 1:31901S15/200‑1 (MQ=255) tCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAATTCATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTc > 1:1073S100/1‑200 (MQ=255) aGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAA‑T‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGG‑‑CGTGATCCATTTTTATGGCCAAATTGTGGGAACCGGCATGTGACGTCAGCAc < 1:10404S31/200‑1 (MQ=255) tGAAAGTATGGATAACACACCAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑GGAGA‑CAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCAccc > 1:27853S5/1‑200 (MQ=255) tGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATAAGTCTGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCACCCAGt < 1:924S27/200‑1 (MQ=255) tGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGaa < 1:16014S69/200‑1 (MQ=255) tGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCACCCAGTCATCGCCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTcc > 1:26220S80/1‑200 (MQ=255) | CAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCG‑‑‑AATCAGCCAACCTGAAAGTATGGATAACA‑‑‑CAACCCTCAAGGATGACTAAT‑CATT‑GAGGAAAT‑‑AGA‑A‑TAAATGTTCAGACCTTTTTTAAACTCTCTTATG‑CTCGGCAGTTTGTTTTTT‑CCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGG‑AACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCC > NC_010473/1159948‑1160282 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 46 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |