New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_010473	= 3838110	21 (0.550)	17 (0.440)	16/398	2.1	44.7%	coding (23/849 nt)	yiaJ	IclR family transcriptional regulator YiaJ
	?	NC_010473	3838114 =	21 (0.550)					coding (19/849 nt)	yiaJ	IclR family transcriptional regulator YiaJ
Rejected: Unknown rejection reason.

GTCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_010473/3837915‑3838110 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGCATATTGAAATTTTAAGCCAAAAAAGCGAT  >  NC_010473/3838114‑3838310                                                                                                                                                                                                                                                                                                                                                                                                                  GTCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑AT                                                                                                                                                                                                        >  1:11174S190/1‑200         GCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CCCATCACTTCT                                                                                                                                                                                                 >  1:29533S50/1‑200                                                  TCTTATTTAAACCAGCCAGCTCCGAAA‑ATTAGCCAACGGACAACC‑CCTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTTCTTCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCG                                                                                                                                                     >  1:1512S9/1‑200                                                                  CAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCG                                                                                                                                     >  1:15433S47/1‑200                                                                    GCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTCC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAATATGCCGTAG‑TTCACGATCTCGA                                                                                                                                    >  1:10719S18/1‑200                                                                      TCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTC‑GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CCCATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAG                                                                                                                                >  1:7225S72/1‑200                                                                                                               CAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGC‑GTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCAT                                                                                    >  1:4509S11/1‑200                                                                                                                         ATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGAT                                                                           >  1:16739S36/1‑200                                                                                                                               ATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CCCATTCCATCCT‑‑CTCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCT‑GA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTG                                                                    <  1:4399S4/200‑1                                                                                                                                       GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGATTCACGATCTCAA‑CA‑ATAATTTATAACCAAACTGATTTTT‑ATGTCTTTTGAAATTCATCGATCAGATTGCCTTGTTAAAA                                                              >  1:11858S6/1‑200                                                                                                                                                ACTCTGGCTTCTGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCC‑GACGGTAGTGCAAAGTGTGCCGTAG‑TTCACGATCTCCAGCAGATAATTTATAACCAA‑TTGATTTTTCATG‑CTCTTTAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGAT                                                    <  1:15463S8/200‑1                                                                                                                                                    TGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTTTCTTTTT‑CCCATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATA                                                 >  1:24485S2/1‑200                                                                                                                                                             GCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCA                                       >  1:11791S26/1‑200                                                                                                                                                                     CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGC                               >  1:17437S53/1‑200                                                                                                                                                                     CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGC                               >  1:4851S69/1‑200                                                                                                                                                                                 CGCCATCTCGTTCTCTTTTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGCATATTGAAATTT                   >  1:26400S11/1‑200                                                                                                                                                                                                  TTT‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGCATATTGAAATTTTAAGCCAAAAAAGCGAT  >  1:28508S81/1‑200                                                                                                                                                                                                                                                                                                                                                                                                                  GTCACATAGCCGCAGGACTGTAATCCCTGCAATAAGCGATGGACGGTACTCTTATTTAAACCAGCCAGCTCCGAAAGATGCGCCAACGGACAACCGTTTGGATAGTTGCTCAAAATCTCAATCAGCATCAACCCGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_010473/3837915‑3838110 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CC‑ATCACTTCTT‑TCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAG‑TTCACGATCTCGA‑CAGATAATTTATAACCAA‑TTGATTTTT‑ATGTCTTTTGAAATTCATCAATCAGATTGCCTTGTTAAAAAGTGATCGATATATTTGAAATCAAGTTTCGCATATTGAAATTTTAAGCCAAAAAAGCGAT  >  NC_010473/3838114‑3838310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 50 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.