| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 1823182 | 1 (0.030) | 32 (0.840) | 28/398 | 0.6 | 97.0% | coding (153/816 nt) | mepH | peptidoglycan DD‑endopeptidase MepH |
| ? | NC_010473 | = 3200797 | NA (NA) | pseudogene (2/2952 nt) | ECDH10B_RS15940 | SslE/AcfD family lipoprotein zinc metalloprotease | |||||
CATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1822997‑1823182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCT < NC_010473/3200797‑3200612 CATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCT < 1:21886S16/200‑1 ATGATAGACCTGCCTTTACAGAGGGACGCTGAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTC > 1:29871S2/1‑200 ATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCtca > 1:1732S67/1‑197 GACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTCACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTGAACTTACCACTCATATCA‑CCAAAAAGACAG‑‑‑‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTGATAATT < 1:5913S6/200‑1 CAGAGGGACGCTCAGTGGCGCGGATAAAC‑TCATCTCGATCACGCTCTGTGCTTTCTTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAA‑GAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAA > 1:12975S15/1‑200 GCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATGATTTCCC‑‑AAAGCGTAACCATGTGT > 1:20190S47/1‑200 CAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TG‑‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑A < 1:8501S15/200‑1 AGTGGCACAGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGT‑‑TG‑‑‑T‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAA > 1:1434S34/1‑200 GTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAA‑‑‑‑GCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAAT < 1:4117S71/200‑1 GGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAA < 1:4544S42/200‑1 TGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTTGAG‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGT > 1:3245S74/1‑200 GTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCCCAAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGT > 1:12834S302/1‑200 ACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCTTCGCAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTT > 1:26039S8/1‑200 CCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTGATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTTCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTA > 1:28806S21/1‑200 TGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCACAT‑‑TTTCCC‑‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGC < 1:3429S18/200‑1 TTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GACATC‑‑‑TCCTAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGA‑TAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAA < 1:3917S45/200‑1 ACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCC‑TCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAAT > 1:27975S31/1‑200 GCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATG > 1:32367S24/1‑200 TATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCG < 1:23930S15/200‑1 CATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTTATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACT < 1:31183S59/200‑1 ATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAAAGTTTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACT < 1:59S8/200‑1 GCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAA‑GAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGAGATAA‑TTTGAAGCTGAGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC < 1:26373S2/200‑1 AAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCACGAGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGC < 1:5575S6/200‑1 AAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGAAGAGATCCCCTGATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGC < 1:27185S14/200‑1 AAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TAA‑GAGATCC‑‑‑CAGAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAA < 1:1009S2/200‑1 CCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAA > 1:17116S3/1‑200 gaaaattaTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑GGTAGGGGCTAGGCTCACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGT > 1:11256S4/9‑200 AGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AA‑‑GAAAAGCACGGCAC‑TGA‑GAGATCCCC‑GACAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGT < 1:18764S25/200‑1 TG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCGAT‑CCTAAGCGAACTGTTGAGAGTAC > 1:2856S6/1‑200 gACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCAC‑TGA‑GAGATCCC‑‑CATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGTACGTTTCGAT < 1:26152S8/199‑1 ACTCATATCA‑CCAAAAGAGCGGAAAGTAAAAGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGTACGTTTC > 1:3876S65/1‑200 AGAAAAGCACGGCAC‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCT < 1:30529S13/200‑1 CATGATAGACCTGCCTTTACAGAGGGACGCTCAGTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGCTTCAAAGCAAGCCAGGGAGAGTTCTG‑‑CT‑ACCACTCATATCA‑CCAAAAAAGCAGATA‑‑AAAAGAAAAGCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1822997‑1823182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C‑TGA‑GAGATCCCCTCATAATTTCCCC‑AAAGCGTAACCATGTGTGA‑ATAAATTTTGAGCT‑AGTAGGGTTGCAGC‑CACGAGTAA‑GTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCC‑ATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCT < NC_010473/3200797‑3200612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 47 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |