| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | = 1396295 | 66 (1.720) | 24 (0.640) | 19/392 | 1.6 | 27.1% | coding (2350/3009 nt) | ECDH10B_RS07015 | Tn3‑like element ISEc63 family transposase |
| ? | NC_010473 | 1396299 = | 64 (1.700) | coding (2354/3009 nt) | ECDH10B_RS07015 | Tn3‑like element ISEc63 family transposase | |||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| Rejected: Unknown rejection reason. | |||||||||||
TCAGTACTCTGGGTTCCATGGCATTGTGGTACCCGGTACATTACGGGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1396117‑1396295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑c‑c‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCGCTGGTTCGCTGAAGTTGGGTACAATTCATGCGTCAGAACTCATTCGCTCTTT > NC_010473/1396299‑1396485 TCAGTACTCTGGGTTCCATGGCATTGTGGTACCCGGTACATTACGG‑ATGC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGC > 1:21268S17/1‑200 GGGTTCCATGGCATTGTGGTACCCGGTACATTACGGGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTG > 1:23348S4/1‑200 TGGTACCCGGTACATTACGGGATTCAGATTTT‑GTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑ATGGCGGGTGAATAAATCG > 1:24062S16/1‑200 acgtacCGGGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑CGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGG > 1:6688S12/7‑200 TACGGGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCG‑‑ATTATTT‑CGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑G‑CTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGG > 1:8915S76/1‑200 GGATTCAGATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTG > 1:14361S41/1‑200 GGATTC‑GATTTTTGTACTGGAAGGCTTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTG‑GGGT‑CTGTT‑TGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGAT > 1:29859S28/1‑200 GGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTTGGTACTAT‑‑TGGCT‑GTGGG‑TAT‑GAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATA > 1:13729S9/1‑200 TTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTG‑C‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAA > 1:25372S9/1‑200 GAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑ATGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATA‑GTTGGCCCGAGGATAT > 1:12794S4/1‑200 AGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTTTGCTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATA > 1:20836S7/1‑200 GACTTCTTGAGCAGCAGAAGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTATTCGCAGCTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATA > 1:32597S9/1‑200 CTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑A > 1:27521S4/1‑200 GAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑CCGGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGT > 1:22018S18/1‑200 GAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑CCGGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGT > 1:1826S10/1‑200 AATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTG > 1:8440S7/1‑200 TCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATG > 1:8620S190/1‑200 ATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑‑‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGA > 1:30819S19/1‑200 TGACAGACACTGCGGGTAGCAGCGATATTATTTT‑GGT‑ATCTTCTCGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAA > 1:19103S11/1‑200 CAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCCGGCTACTGGGGTAT‑CAGTTTTCTCTC‑TGTTTGCCGATGCAGGTGAGGTGGTGTT‑‑CTGGCGGGTGAAATAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGATATGATGtgct < 1:32285S25/200‑5 AGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGT‑CTGGCTACTGGGGTAT‑CAGTTTTC‑C‑CCGGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCG > 1:30786S11/1‑200 TACTGGGGTAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCGCTGGTTCGCTGAAGTTGGGTACAATTCATGCGTCAGAACTCATT > 1:9774S18/1‑200 TGGGGTAT‑CAGTTTCC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑GTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCT‑‑‑AAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCGCTGGTTCGCTGAAGTTGGGTACAATTCATGCGTCAGAACTCATTCGCTCT > 1:18966S77/1‑200 TAT‑CAGTTTTC‑C‑C‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTCGGCCGAGGATATGCAGGATGT‑TCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCGCTGGTTCGCTGAAGTTGGGTACAATTCATGCGTCAGAACTCATTCGCTCTTT > 1:4774S7/1‑200 TCAGTACTCTGGGTTCCATGGCATTGTGGTACCCGGTACATTACGGGATTC‑GATTTTTGTACTGGAAGGACTTCTTGAGCAGC‑‑‑AGACAGGGCTGAATCCAGTTGAAATCATGACAGACACTGCGGGTAGCAGCGATATTATTTTCGGT‑CTGTTCTGGCTACTGGGGTAT‑CAGTTTTC‑C‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_010473/1396117‑1396295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑c‑c‑GGCTTGCCGATGCAGGTGAGGCGGTGTT‑‑CTGGCGGGTGAATAAATCGGCAAACTACGGAGTACTGGATAAGTTGGCCCGAGGATATGCAG‑ATCTGTCAAAAGCGGAGAGTCAGTGGGATGAGATGATGCGAACCGCTGGTTCGCTGAAGTTGGGTACAATTCATGCGTCAGAACTCATTCGCTCTTT > NC_010473/1396299‑1396485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 47 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |