| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 1394899 = | 72 (1.880) | 15 (0.400) | 15/388 | 2.2 | 17.8% | coding (954/3009 nt) | ECDH10B_RS07015 | Tn3‑like element ISEc63 family transposase |
| ? | NC_010473 | = 1394894 | 68 (1.820) | coding (949/3009 nt) | ECDH10B_RS07015 | Tn3‑like element ISEc63 family transposase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
| Rejected: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| Rejected: Unknown rejection reason. | |||||||||||
TGGAAATTATTGTTCTGTGGACGAGCAAGTTCATTAACCTTGCTTACAGATT‑CTGCCAGTCTGTTTTTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/1395093‑1394899‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttt‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATATATTTTACCGACGCCATGCCAGCATAACGAGCCAGATTACGCAGTT < NC_010473/1394894‑1394706 TGGAAATTATTGTTCTGTGGACGAGCAAGTTCATTAACCTTGCTTACAGATTTCTGC‑AGTCTGTTTTTGGGTACGCACTTGAAGATAACCTGCCTCAAATC‑AGGACATGTCT‑CTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGT > 1:12580S11/1‑200 CAAGTTCATTAACCTTGCTTACAGATT‑CTGCCAGTCTGTTTTTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTT‑‑CAGTGTCCTGAGTCTTTTTTGCCC‑GGTTTTCTTTGCTTCGCGGATAATGT > 1:24285S10/1‑200 GTTCATTAACCTTGCTTACAGATT‑CTGCCAGTCTGTTTT‑GGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAG > 1:8016S21/1‑200 TCATTAACCTTGCTTACAGATT‑CTGCCAGTCTGTTTTTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAAATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGG‑TAATGTCCAGAA > 1:21125S23/1‑200 AGTCTGTTTT‑GGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATC‑‑TAT‑ATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGT > 1:14574S13/1‑200 GTTTTTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTC > 1:28269S4/1‑200 TTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTCTTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTTTCAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAA > 1:9472S10/1‑200 GGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTT‑‑CAGTGTCCTGAGTCTTTTT‑GCC‑‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGT > 1:6883S5/1‑200 ACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCCCGGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATT > 1:15390S7/1‑200 CTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTTTGCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTA > 1:21207S86/1‑200 TGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTGTTTT‑‑TTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGTTTTCTCTGCTGTGGCATcagag > 1:20606S7/1‑195 CCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATAT > 1:10119S14/1‑200 GCCTGATCAAGATCTT‑‑CAGTGTCCTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATATATTTTACCGACGCCATGCCAG > 1:20667S36/1‑200 AGATCTTT‑CAGTGTCCTGAGTCTTTTTTGCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATATATTTTACCGACGCCATGCCAGCATAACG > 1:4324S21/1‑200 CTGAGTCTTTTT‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATATATTT‑ACCGACGCCATGCCAGCATAACGAGCCAGATTttcgcaga > 1:12456S22/1‑192 TGGAAATTATTGTTCTGTGGACGAGCAAGTTCATTAACCTTGCTTACAGATT‑CTGCCAGTCTGTTTTTGGGTACGCACTTGAAGATAACCTGCCTGAGATCTGGGACATCTGTATTATCATCCAGCAACAATGCACATGCCCGCGCCAGTAACAATGCGGCCTGATCAAGATCTTT‑CAGTGTCCTGAGTCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/1395093‑1394899‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttt‑GCCC‑GGTTTTCTTTGCTTCGCGGATAATGTCCAGAATTAGCATATCAAGCACATCAACGGCATCGTCTAATGCCGTTATTTCCTGTGCTTTAACGAATGCAGTAAGTACAGCAAGCTTTCTCTGCTGTGGCATTCGAGCGATATATTTTACCGACGCCATGCCAGCATAACGAGCCAGATTACGCAGTT < NC_010473/1394894‑1394706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 47 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |