| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 1118030 = | 1 (0.030) | 31 (0.810) | 28/396 | 0.6 | 59.6% | coding (844/1257 nt) | yccE | YccE family protein |
| ? | NC_010473 | = 3213256 | 41 (1.080) | intergenic (+12/+1) | ECDH10B_RS15990/ECDH10B_RS15995 | IS4‑like element ISVsa5 family transposase/DUF4092 domain‑containing protein | |||||
ATCTGAAAGAACAACAAGAAAATTCTTCACCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/1118224‑1118030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGT < NC_010473/3213256‑3213058 ATCTGAAAGAACAACAAGAAAATTCTTCACCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTT‑TAAGTTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑Taaat > 1:25141S34/1‑196 AAGAAAATTCTTCACCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑‑‑ATAA‑TTT < 1:30088S33/200‑1 AAATTCTTCACCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAA‑CAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑T‑AGAGATCCCCT‑‑‑ATAA‑TTTCC‑CCAA < 1:17030S9/200‑1 CCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AA > 1:9274S4/1‑200 CGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CCCTGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AA > 1:32173S3/1‑200 TTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCGGGATTACATCTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑AT > 1:23138S56/1‑200 ACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTT < 1:14222S9/200‑1 CTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGG < 1:30163S58/200‑1 GCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCC > 1:27754S15/1‑200 TTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCGCAACATAA‑GACTACTCTGC‑C‑‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCACAGAGTGA > 1:24474S25/1‑200 TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑T‑AAAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTT < 1:21084S48/200‑1 TAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATT < 1:15297S5/200‑1 TCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTA > 1:6650S1/1‑200 GGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑C‑‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCA > 1:853S28/1‑200 TAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAG < 1:11266S62/200‑1 TAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAA‑CAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGA < 1:24396S26/200‑1 GAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCA > 1:1697S19/1‑200 T‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAA > 1:30001S33/1‑200 CGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATG < 1:30585S32/200‑1 AAGCAACTATCAATGAATTGTTTTTTAAAAA‑CAGAAAGCTCCATGACATAAACACTAATCTGCTCC‑TTAAACATCCCCTGCGATAA‑TTTCCGCCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTA < 1:14551S13/200‑1 AGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CTAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTATTTCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGA > 1:31264S21/1‑200 CTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGACAGATCCC‑‑‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTG < 1:24283S38/200‑1 CAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TG‑G‑CATCCCCT‑T‑ATAA‑TTTCC‑CCAAAACTTACAACTTATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCgagccagttgttgag < 1:2872S1/200‑16 TGAATTGTTTTTTAAAAA‑CAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAATCCGCCTCGCAAAACTTCCATGCCTAAGCGAACTGTTGAG < 1:10448S4/200‑1 GAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTA > 1:31201S20/1‑200 GAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTACTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTG > 1:20785S42/1‑200 AAGCTCCATGACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCGGAAT‑‑CC‑‑AGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTT > 1:15964S15/1‑200 ACATAA‑GACTACTCTGC‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTggaagtgctt < 1:22831S67/200‑11 ACTACTCTGC‑CC‑TGAGAGATCCCCT‑‑‑ATAAATTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATATATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTCAGT‑TTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAggcttgtcca < 1:22794S9/200‑11 C‑CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTT‑‑CATTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGT > 1:7554S4/1‑200 CC‑TGAGAGATCCCCT‑C‑ATAA‑TTTTC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTG > 1:29942S172/1‑200 ATCTGAAAGAACAACAAGAAAATTCTTCACCGCTTTAATCCTATCCGACGTGTCGGTATCTAAAGCAAGCAAGTTCTTGTTATCA‑TTAAATATAAACTCGGGTAAATGCAGGAT‑ACATTTTTCGTTATTCAAGCAACTATCAATGAATTGTTTTTTAAAAAACAGAAAGCTCCATGACATAA‑GACTACTCTGC‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/1118224‑1118030‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑c‑TGAGAGATCCCCT‑C‑ATAA‑TTTCC‑CCAAAACGT‑‑AACC‑ATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCAGCCAC‑GAGTGAGTCTTCCCTTGTTATTGTGTAGCCAGAAT‑‑GC‑‑CGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGT < NC_010473/3213256‑3213058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 48 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |