| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010473 | 296335 = | 85 (2.220) | 23 (0.610) | 20/390 | 1.4 | 21.9% | intergenic (+480/‑47) | rclR/ykgE | reactive chlorine‑specific transcriptional regulator RclR/heterodisulfide reductase‑related iron‑sulfur binding cluster |
| ? | NC_010473 | = 296331 | 81 (2.160) | intergenic (+476/‑51) | rclR/ykgE | reactive chlorine‑specific transcriptional regulator RclR/heterodisulfide reductase‑related iron‑sulfur binding cluster | |||||
| Rejected: Unknown rejection reason. | |||||||||||
ACCGCTATTGATCGCAGGCTGACCGCAGCATCCCTGTTTCTCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/296531‑296335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccc‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGGGGAAATCGACGATCATTT < NC_010473/296331‑296162 ACCGCTATTGATCGCAGGCTGACCGCAGCATCCCTGTTTCTCCGG‑AAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTACGCTC‑CACGCCCATTTATGC‑CCG‑AGGT‑CTCCCC‑AC < 1:25914S1/200‑1 ATCGCAGGCTGACCGCAGCATCCCTGTTTCTCCGGGAAATTTACGCGCAGACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTTTCAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGG < 1:23563S101/200‑1 CGCAGGCTGACCGCAGCATCCCTGTTTCTCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑CTCCCCGACCG‑GGGGATCAAT < 1:912S17/200‑1 CTGACCGCAGCATCCCTGTTTATCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTC‑ATTA‑‑CTTACATGCC‑ATTTATGTTGCA‑ATCT‑TCCCCC‑ACCG‑GGG‑ATCAAT‑‑‑CAT‑CAATA > 1:26975S54/1‑200 AGCATCCCTGTTTCTCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CACGTCCATTTATCC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAATTACCAT‑CAATAAAT > 1:23945S14/1‑200 AGCATCCCTGTTTCTCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTC‑ATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGAATCGAT‑‑‑CAT‑CAATAAATATGG > 1:3240S35/1‑200 CCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTcaa < 1:8257S59/200‑4 AATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCT‑ATGTCTCCCCC‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTA < 1:1339S41/200‑1 ACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCATATTTCTAGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑C‑‑‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAA < 1:6446S30/200‑1 ACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAGTTCACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAAC < 1:16955S13/200‑1 CCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCGCGGGAATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGT > 1:13544S3/1‑200 GGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCTTATGTCTCCCCC‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATA < 1:14280S14/200‑1 TCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATTATCCACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCT > 1:14278S7/1‑200 CAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ACGT‑CTCCCC‑ACCG‑GGG‑ATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCC‑TCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTT < 1:32803S101/200‑1 AGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCC‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTATCATCCAAACGTCAAATGCAATAACTAATTTTATTTCT > 1:16190S17/1‑200 GTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTTATTTGTATGACAAATGATAATCTTTCATCCAAATGTCAAATGCAATAACTAATTTTATTTCTT < 1:15634S9/200‑1 TGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCT‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTT < 1:30171S7/200‑1 GAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATC < 1:7340S51/200‑1 AAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCG < 1:30616S20/200‑1 CAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCC‑ACCG‑GGGGATCAAT‑‑‑AATATAATAAATATGGCGTTCTTTTT‑AATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGG > 1:17040S27/1‑200 CCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGGGGAAATCGAC < 1:21780S18/200‑1 ATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCCCACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGGGGAAATCGACGA > 1:1354S71/1‑200 TT‑CATGCCCATTTATGC‑CCG‑ATGT‑CTCCCC‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGGGGAAATCGACGATCATTT < 1:19786S3/200‑1 ACCGCTATTGATCGCAGGCTGACCGCAGCATCCCTGTTTCTCCGGGAAATTTACGC‑‑‑GACAGCCGAGTTTTTCCAGTAGCAGCACGGAGTCTCGTGCCA‑‑‑TTCTTGATTT‑CAGGGCGTCACCAATACAGGTGACAAAGAAATTGACATT‑‑‑CACAACTAATACTCCATTA‑‑CTT‑CATGCCCATTTATGC‑CCG‑ATGT‑TTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_010473/296531‑296335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccc‑ACCG‑GGGGATCAAT‑‑‑CAT‑CAATAAATATGGCGTTCTTTTTTAATTGGCTAGCAACATACCACCCCTCATTTGTATGACAAATGATAATCTTTCATCCAAACGTCAAATGCAATAACTAATTTTATTTCTTTCGGCATCGCTCACATTTTATGGGGAAATCGACGATCATTT < NC_010473/296331‑296162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 47 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |