iGEM Freiburg 2024
iGEM Freiburg 2024  | CAPTURE
  • Description Engineering Success Results Contribution
  • Protocols Notebook Safety
  • Part Collection Plasmid Design
  • Measurement
  • Human Practices
  • Team Members Attributions
  • Achievements

Part Collection

A Detailed Overview.
  • Basic Parts
  • Composite Parts

On this page, we present the parts that we have actively used in our experimental work. For a comprehensive overview of all the parts we planned, including those not yet tested, please refer to our Plasmid Design page. Our collection includes novel basic and composite parts generated by our team, as well as basic parts from the registry that we used during our project. In our composite part collection, you can find our best new composite part BBa_K5057007, which is composed of the antimicrobial peptide Sushi S1 BBa_K5057004 and the signal peptide HSTII BBa_K5057002.

Basic Parts

ID Name Function
BBa_K3286004 Lac-operator DNA sequence before the promoter recognized and bound by lacI repressor inhibiting the transcription of gene of interest, present on the pET22b(+)-based plasmids
BBa_K2842670 Lac-operator DNA sequence before the promoter recognized and bound by lacI repressor inhibiting the transcription of gene of interest, present on the pTrc99a-LacIq-eCPX and pTrc99a-Amp-eCPX plasmids
BBa_K2572009 LacI promoter promoter from Lac operon regulating the expression of LacI
BBa_K2308015 LacI LacI repressor binding lac-Operator and inhibiting the transcription of gene of interest
BBa_K2534005 AmpR promoter promoter responsible for the expression of beta-lactamase, present on the pET22b(+)-based plasmids
BBa_K4587113 RBS binding site for ribosomal subunits allowing translation initiation
BBa_J32015 pelB leader sequence directing the protein of interest to the bacterial periplasm
BBa_K5057002 HSTII Heat-Stable Enterotoxin II (HSTII) derived localization peptide enabling extracellular localization of protein
BBa_K5057004 Sushi S1 antimicrobial cationic peptide composed of 34 amino acids, derived from the lipopolysaccharide (LPS)-binding region of Factor C found in horseshoe crabs
BBa_K5057005 CONGA antimicrobial peptide created in a process of continued molecular evolution
BBa_K5057006 Sushi Imitate peptide imitating the length of Sushi S1 antimicrobial peptide without the typical characteristics of an AMP
BBa_K4790077 His-Tag short sequence coding for hexa histidine-tag enabling purification of protein of interest
BBa_K5057003 mCherry monomeric red fluorescent protein derived from the red fluorescent protein of Discosoma sp
BBa_K4673031 Beta-Lactamase enzyme conferring resistance to beta-lactam-based antibiotics, present on the pET22b(+)-based plasmids
BBa_K3830009 F1 bacteriophage origin of replication F1 bacteriophage derived origin of replication allowing replication and packaging of ssDNA into phage particles
BBa_K2796022 ColE1/pMB1/pBR322/pUC origin of replication high-copy-number origin of replication
BBa_K4651014 Rop protein gene encoding Rop protein regulating the copy number of the plasmid in the bacterium
BBa_K3982024 p15a ori medium-copy-number p15A origin of replication
BBa_K4841002 CmR gene encoding chloramphenicol acetyltransferase conferring chloramphenicol resistance
BBa_K2308014 LacIq promoter mutated LacI promoter resulting in higher expression levels of GOI
BBa_K3805208 trc promoter hybrid promoter derived from trp and lac promoters.
BBa_K4696011 Beta-Lactamase enzyme conferring resistance to beta-lactam-based antibiotics, present on the pTrc99a-LacIq-eCPX and pTrc99a-Amp-eCPX plasmids
BBa_K4800001 rrnb T1 terminator transcription terminator T1 from the E. coli rrnB gene
BBa_K3763043 rrnb T2 terminator transcription terminator T2 from the E. coli rrnB gene
BBa_J64997 T7 promoter T7-bacteriophage RNA polymerase specific promoter for constitutive transcription of gene of interest
BBa_K3875029 RBS Binding site for the ribosomal subunits allowing translation initiation
BBa_B0016 T7 terminator T7-bacteriophage derived termination region allowing efficient transcription termination
BBa_K2569033 AmpR promoter promoter responsible for the expression of beta-lactamase, present on the pTrc99a-LacIq-eCPX and pTrc99a-Amp-eCPX plasmids
BBa_K4604040 tetR gene encoding a repressor regulating the tet promoter
BBa_K4229059 TetR/A promoter Tetracycline/Doxycyclline inducible promoter
BBa_K3257024 T7Te terminator rho-independent T7 terminator
BBa_K3914004 lambda T0 terminator Phage derived terminator
BBa_K3982016 Cat promoter promoter responsible for the expression of chloramphenicol acetyltransferase

Composite Parts

ID Name Function
BBa_K5057007 ★ HSTII-Sushi antimicrobial peptide Sushi S1 with extracellular leader sequence HSTII
BBa_K5057008 HSTII-CONGA antimicrobial peptide CONGA with extracellular leader sequence HSTII
BBa_K5057009 HSTII-mCherry red fluorescent protein mCherry with extracellular leader sequence HSTII
BBa_K5057010 SpyTag-eCPX Enhanced Circularly Permuted OmpX fused to SpyTag
BBa_K5057011 SpyCatcher-P2 Phage tail protein 2 fused to SpyCatcher
BBa_K5057012 HSTII-Sushi-6xHis His-tagged antimicrobial peptide Sushi S1 with extracellular leader sequence HSTII
BBa_K5057013 pelB-Sushi antimicrobial peptide Sushi S1 with periplasmic leader sequence pelB
BBa_K5057014 pelB-Sushi-6xHis His-tagged antimicrobial peptide Sushi S1 with periplasmic leader sequence pelB
BBa_K5057015 HSTII-Imitate Sushi imitating peptide with extracellular leader sequence HSTII

gitlab.igem.org/2024/freiburg | Creative Commons Attribution 4.0 License