#=GENOME_DIFF	1.0
#=CREATED	10:42:51 29 Sep 2024
#=PROGRAM	breseq 0.38.1 
#=COMMAND	/env/cns/proj/agc/proj/microscope/NGS/dev/install/breseq/0.38.1/source/breseq-0.38.1/bin/breseq -j 8 -r Ecoli_DH10B.gb --nanopore S2060_Dung_Dnfi_c10/11109049673_S2060_Dung_Dnfi_c10.rawdata.fastq.gz
#=REFSEQ	Ecoli_DH10B.gb
#=READSEQ	S2060_Dung_Dnfi_c10/11109049673_S2060_Dung_Dnfi_c10.rawdata.fastq.gz
#=CONVERTED-BASES	192791400
#=CONVERTED-READS	963957
#=INPUT-BASES	196085749
#=INPUT-READS	32867
#=MAPPED-BASES	181025189
#=MAPPED-READS	908175
SNP	1	12	NC_010473	20896	C
SNP	2	13	NC_010473	142348	A
SUB	3	16,17	NC_010473	1386237	2	GT
SUB	4	18,19	NC_010473	1386240	2	AA
SNP	5	29	NC_010473	2086037	C
SUB	6	63,368	NC_010473	2806542	689	GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGCATGCACGCAGCATATGC
SNP	7	32	NC_010473	3917708	A
DEL	8	66,496	NC_010473	3917725	22
SNP	9	33	NC_010473	4032695	T
INS	10	34	NC_010473	4272972	T
SUB	11	67,524	NC_010473	4296510	671	GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACCTTCGCATGCACGCAGCATATGC
RA	12	.	NC_010473	20896	0	N	C	consensus_score=159.3	frequency=1	major_base=C	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	13	.	NC_010473	142348	0	N	A	bias_e_value=3906670	bias_p_value=0.833666	consensus_score=95.2	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.995842	major_base=A	major_cov=14/16	major_frequency=9.375e-01	minor_base=C	minor_cov=2/0	new_cov=14/16	polymorphism_frequency=9.375e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	14	.	NC_010473	218669	0	T	A	bias_e_value=1446060	bias_p_value=0.308582	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.4	fisher_strand_p_value=0.175196	frequency=5.096e-01	ks_quality_p_value=0.518143	major_base=A	major_cov=25/28	major_frequency=5.096e-01	minor_base=T	minor_cov=31/20	new_cov=25/28	polymorphism_frequency=5.096e-01	polymorphism_score=202.9	prediction=polymorphism	ref_cov=31/20	total_cov=56/48
RA	15	.	NC_010473	276960	0	C	T	bias_e_value=1649870	bias_p_value=0.352075	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.7	fisher_strand_p_value=1	frequency=6.883e-01	ks_quality_p_value=0.109672	major_base=T	major_cov=32/21	major_frequency=6.883e-01	minor_base=C	minor_cov=14/10	new_cov=32/21	polymorphism_frequency=6.883e-01	polymorphism_score=73.3	prediction=polymorphism	ref_cov=14/10	total_cov=48/32
RA	16	.	NC_010473	1386237	0	T	G	bias_e_value=4686140	bias_p_value=1	consensus_score=139.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=17/18	major_frequency=9.722e-01	minor_base=A	minor_cov=1/0	new_cov=17/18	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/18
RA	17	.	NC_010473	1386238	0	G	T	bias_e_value=4685710	bias_p_value=0.99991	consensus_score=132.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986577	major_base=T	major_cov=18/18	major_frequency=9.730e-01	minor_base=C	minor_cov=1/0	new_cov=18/18	polymorphism_frequency=9.730e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	18	.	NC_010473	1386240	0	G	A	bias_e_value=4686130	bias_p_value=0.999999	consensus_score=143.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.9985	major_base=A	major_cov=18/18	major_frequency=9.730e-01	minor_base=G	minor_cov=1/0	new_cov=18/18	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/18
RA	19	.	NC_010473	1386241	0	C	A	consensus_score=148.7	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	20	.	NC_010473	1395345	0	A	G	bias_e_value=580579	bias_p_value=0.123893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.0	fisher_strand_p_value=1	frequency=5.930e-01	ks_quality_p_value=0.026826	major_base=G	major_cov=24/27	major_frequency=5.930e-01	minor_base=A	minor_cov=16/19	new_cov=24/27	polymorphism_frequency=5.930e-01	polymorphism_score=133.0	prediction=polymorphism	ref_cov=16/19	total_cov=40/47
RA	21	.	NC_010473	1455375	0	T	C	bias_e_value=1535560	bias_p_value=0.327681	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.7	fisher_strand_p_value=0.114428	frequency=3.385e-01	ks_quality_p_value=0.864151	major_base=T	major_cov=19/24	major_frequency=6.615e-01	minor_base=C	minor_cov=15/7	new_cov=15/7	polymorphism_frequency=3.385e-01	polymorphism_score=60.3	prediction=polymorphism	ref_cov=19/24	total_cov=35/31
RA	22	.	NC_010473	1455380	0	T	C	bias_e_value=659204	bias_p_value=0.140671	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.3	fisher_strand_p_value=0.0334186	frequency=3.125e-01	ks_quality_p_value=0.944766	major_base=T	major_cov=20/24	major_frequency=6.875e-01	minor_base=C	minor_cov=15/5	new_cov=15/5	polymorphism_frequency=3.125e-01	polymorphism_score=58.3	prediction=polymorphism	ref_cov=20/24	total_cov=35/29
RA	23	.	NC_010473	1455383	0	T	G	bias_e_value=313503	bias_p_value=0.0669002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.1	fisher_strand_p_value=0.0126353	frequency=3.279e-01	ks_quality_p_value=0.982522	major_base=T	major_cov=18/23	major_frequency=6.721e-01	minor_base=G	minor_cov=16/4	new_cov=16/4	polymorphism_frequency=3.279e-01	polymorphism_score=61.3	prediction=polymorphism	ref_cov=18/23	total_cov=34/28
RA	24	.	NC_010473	1455386	0	T	C	bias_e_value=391961	bias_p_value=0.0836427	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.3	fisher_strand_p_value=0.0163589	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=18/24	major_frequency=6.667e-01	minor_base=C	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=3.333e-01	polymorphism_score=38.8	prediction=polymorphism	ref_cov=18/24	total_cov=34/29
RA	25	.	NC_010473	1455388	0	T	A	bias_e_value=627343	bias_p_value=0.133872	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.9	fisher_strand_p_value=0.0296229	frequency=3.279e-01	ks_quality_p_value=1	major_base=T	major_cov=18/23	major_frequency=6.721e-01	minor_base=A	minor_cov=15/5	new_cov=15/5	polymorphism_frequency=3.279e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=18/23	total_cov=33/28
RA	26	.	NC_010473	1455389	0	T	A	bias_e_value=547891	bias_p_value=0.116917	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.6	fisher_strand_p_value=0.0249174	frequency=3.103e-01	ks_quality_p_value=1	major_base=T	major_cov=18/22	major_frequency=6.897e-01	minor_base=A	minor_cov=14/4	new_cov=14/4	polymorphism_frequency=3.103e-01	polymorphism_score=46.9	prediction=polymorphism	ref_cov=18/22	total_cov=33/28
RA	27	.	NC_010473	1455447	0	A	G	bias_e_value=250958	bias_p_value=0.0535533	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.0	fisher_strand_p_value=0.0420554	frequency=2.909e-01	ks_quality_p_value=0.224958	major_base=A	major_cov=17/22	major_frequency=7.091e-01	minor_base=G	minor_cov=12/4	new_cov=12/4	polymorphism_frequency=2.909e-01	polymorphism_score=53.8	prediction=polymorphism	ref_cov=17/22	total_cov=30/26
RA	28	.	NC_010473	1455468	0	T	G	bias_e_value=153043	bias_p_value=0.0326587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.3	fisher_strand_p_value=0.0755996	frequency=2.727e-01	ks_quality_p_value=0.0690636	major_base=T	major_cov=18/22	major_frequency=7.273e-01	minor_base=G	minor_cov=11/4	new_cov=11/4	polymorphism_frequency=2.727e-01	polymorphism_score=52.8	prediction=polymorphism	ref_cov=18/22	total_cov=29/26
RA	29	.	NC_010473	2086037	0	A	C	bias_e_value=4686140	bias_p_value=1	consensus_score=179.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=18/22	major_frequency=9.756e-01	minor_base=A	minor_cov=0/1	new_cov=18/22	polymorphism_frequency=9.756e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/1	total_cov=18/23
RA	30	.	NC_010473	2197982	0	C	T	bias_e_value=2701	bias_p_value=0.000576381	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.0	fisher_strand_p_value=5.3161e-05	frequency=2.927e-01	ks_quality_p_value=1	major_base=C	major_cov=20/9	major_frequency=7.073e-01	minor_base=T	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.927e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=20/9	total_cov=20/21
RA	31	.	NC_010473	2260416	0	A	C	bias_e_value=3297890	bias_p_value=0.703754	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.6	fisher_strand_p_value=1	frequency=2.353e-01	ks_quality_p_value=0.337192	major_base=A	major_cov=15/11	major_frequency=7.647e-01	minor_base=C	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=2.353e-01	polymorphism_score=28.1	prediction=polymorphism	ref_cov=15/11	total_cov=19/15
RA	32	.	NC_010473	3917708	0	T	A	consensus_score=180.4	frequency=1	major_base=A	major_cov=25/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/18
RA	33	.	NC_010473	4032695	0	G	T	bias_e_value=3270350	bias_p_value=0.697877	consensus_score=129.5	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=0.705128	major_base=T	major_cov=15/18	major_frequency=9.706e-01	minor_base=.	minor_cov=1/0	new_cov=15/18	polymorphism_frequency=9.706e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/0	total_cov=16/18
RA	34	.	NC_010473	4272972	1	.	T	bias_e_value=4663320	bias_p_value=0.995132	consensus_score=71.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.902963	major_base=T	major_cov=8/11	major_frequency=8.636e-01	minor_base=.	minor_cov=1/2	new_cov=8/11	polymorphism_frequency=8.636e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=1/2	total_cov=9/13
RA	35	.	NC_010473	4424406	0	C	T	bias_e_value=4209500	bias_p_value=0.898287	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.8	fisher_strand_p_value=1	frequency=2.083e-01	ks_quality_p_value=0.584335	major_base=C	major_cov=18/20	major_frequency=7.917e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.083e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=18/20	total_cov=23/25
RA	36	.	NC_010473	4424407	0	A	T	bias_e_value=3953150	bias_p_value=0.843585	consensus_reject=FREQUENCY_CUTOFF	consensus_score=66.3	fisher_strand_p_value=1	frequency=2.083e-01	ks_quality_p_value=0.495715	major_base=A	major_cov=18/20	major_frequency=7.917e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.083e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=18/20	total_cov=23/25
RA	37	.	NC_010473	4424434	0	T	C	bias_e_value=3258070	bias_p_value=0.695256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=65.3	fisher_strand_p_value=1	frequency=2.041e-01	ks_quality_p_value=0.329457	major_base=T	major_cov=18/21	major_frequency=7.959e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.041e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=18/21	total_cov=24/26
RA	38	.	NC_010473	4424476	0	T	C	bias_e_value=485495	bias_p_value=0.103602	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.8	fisher_strand_p_value=0.112631	frequency=2.308e-01	ks_quality_p_value=0.189847	major_base=T	major_cov=19/21	major_frequency=7.692e-01	minor_base=C	minor_cov=9/3	new_cov=9/3	polymorphism_frequency=2.308e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=19/21	total_cov=28/24
RA	39	.	NC_010473	4424532	0	T	G	bias_e_value=3028900	bias_p_value=0.646353	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=0.477978	frequency=2.083e-01	ks_quality_p_value=0.602289	major_base=T	major_cov=20/18	major_frequency=7.917e-01	minor_base=G	minor_cov=7/3	new_cov=7/3	polymorphism_frequency=2.083e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=20/18	total_cov=27/23
RA	40	.	NC_010473	4658820	0	T	G	bias_e_value=372309	bias_p_value=0.079449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.4	fisher_strand_p_value=0.0486009	frequency=3.659e-01	ks_quality_p_value=0.315777	major_base=T	major_cov=18/8	major_frequency=6.341e-01	minor_base=G	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.659e-01	polymorphism_score=54.2	prediction=polymorphism	ref_cov=18/8	total_cov=23/18
RA	41	.	NC_010473	4658828	0	G	A	bias_e_value=916494	bias_p_value=0.195576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.1	fisher_strand_p_value=0.0486009	frequency=3.659e-01	ks_quality_p_value=1	major_base=G	major_cov=18/8	major_frequency=6.341e-01	minor_base=A	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.659e-01	polymorphism_score=38.2	prediction=polymorphism	ref_cov=18/8	total_cov=23/18
RA	42	.	NC_010473	4658829	0	G	A	bias_e_value=916494	bias_p_value=0.195576	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.9	fisher_strand_p_value=0.0486009	frequency=3.659e-01	ks_quality_p_value=1	major_base=G	major_cov=18/8	major_frequency=6.341e-01	minor_base=A	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.659e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=18/8	total_cov=23/18
RA	43	.	NC_010473	4658832	0	T	C	bias_e_value=714850	bias_p_value=0.152546	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.2	fisher_strand_p_value=0.0356959	frequency=2.683e-01	ks_quality_p_value=0.982273	major_base=T	major_cov=20/10	major_frequency=7.317e-01	minor_base=C	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.683e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=20/10	total_cov=23/18
RA	44	.	NC_010473	4658833	0	G	C	bias_e_value=1251480	bias_p_value=0.26706	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.0	fisher_strand_p_value=0.0753248	frequency=2.439e-01	ks_quality_p_value=0.984388	major_base=G	major_cov=20/11	major_frequency=7.561e-01	minor_base=C	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.439e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=20/11	total_cov=23/18
RA	45	.	NC_010473	4658834	0	T	C	bias_e_value=517802	bias_p_value=0.110497	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.2	fisher_strand_p_value=0.0235063	frequency=3.750e-01	ks_quality_p_value=0.986755	major_base=T	major_cov=18/7	major_frequency=6.250e-01	minor_base=C	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.750e-01	polymorphism_score=36.0	prediction=polymorphism	ref_cov=18/7	total_cov=23/18
RA	46	.	NC_010473	4658838	0	G	C	bias_e_value=444164	bias_p_value=0.0947825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.8	fisher_strand_p_value=0.02593	frequency=3.030e-01	ks_quality_p_value=0.73741	major_base=G	major_cov=17/6	major_frequency=6.970e-01	minor_base=C	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=3.030e-01	polymorphism_score=25.4	prediction=polymorphism	ref_cov=17/6	total_cov=22/18
RA	47	.	NC_010473	4658840	0	A	T	bias_e_value=619944	bias_p_value=0.132293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.1	fisher_strand_p_value=0.0538427	frequency=2.941e-01	ks_quality_p_value=0.541861	major_base=A	major_cov=17/7	major_frequency=7.059e-01	minor_base=T	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.941e-01	polymorphism_score=32.4	prediction=polymorphism	ref_cov=17/7	total_cov=22/18
RA	48	.	NC_010473	4658880	0	T	C	bias_e_value=521908	bias_p_value=0.111373	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.0	fisher_strand_p_value=0.0235063	frequency=3.750e-01	ks_quality_p_value=0.996672	major_base=T	major_cov=18/7	major_frequency=6.250e-01	minor_base=C	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.750e-01	polymorphism_score=34.3	prediction=polymorphism	ref_cov=18/7	total_cov=23/18
RA	49	.	NC_010473	4658888	0	A	G	bias_e_value=1004110	bias_p_value=0.214273	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.2	fisher_strand_p_value=0.0549139	frequency=3.846e-01	ks_quality_p_value=1	major_base=A	major_cov=16/8	major_frequency=6.154e-01	minor_base=G	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.846e-01	polymorphism_score=40.0	prediction=polymorphism	ref_cov=16/8	total_cov=21/18
RA	50	.	NC_010473	4658907	0	G	A	bias_e_value=380278	bias_p_value=0.0811496	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.0	fisher_strand_p_value=0.0230609	frequency=3.333e-01	ks_quality_p_value=0.68321	major_base=G	major_cov=19/9	major_frequency=6.667e-01	minor_base=A	minor_cov=4/10	new_cov=4/10	polymorphism_frequency=3.333e-01	polymorphism_score=49.8	prediction=polymorphism	ref_cov=19/9	total_cov=23/19
RA	51	.	NC_010473	4658908	0	T	A	bias_e_value=997851	bias_p_value=0.212937	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.8	fisher_strand_p_value=0.0546849	frequency=3.571e-01	ks_quality_p_value=0.995776	major_base=T	major_cov=18/9	major_frequency=6.429e-01	minor_base=A	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.571e-01	polymorphism_score=56.0	prediction=polymorphism	ref_cov=18/9	total_cov=23/19
RA	52	.	NC_010473	4658921	0	T	G	bias_e_value=459827	bias_p_value=0.098125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=68.9	fisher_strand_p_value=0.026241	frequency=3.415e-01	ks_quality_p_value=0.761041	major_base=T	major_cov=18/9	major_frequency=6.585e-01	minor_base=G	minor_cov=4/10	new_cov=4/10	polymorphism_frequency=3.415e-01	polymorphism_score=48.7	prediction=polymorphism	ref_cov=18/9	total_cov=22/19
RA	53	.	NC_010473	4658922	0	G	A	bias_e_value=466546	bias_p_value=0.0995588	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.9	fisher_strand_p_value=0.0569951	frequency=2.195e-01	ks_quality_p_value=0.356833	major_base=G	major_cov=20/12	major_frequency=7.805e-01	minor_base=A	minor_cov=2/7	new_cov=2/7	polymorphism_frequency=2.195e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=20/12	total_cov=22/19
RA	54	.	NC_010473	4658930	0	G	T	bias_e_value=279029	bias_p_value=0.0595436	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.5	fisher_strand_p_value=0.0281152	frequency=2.258e-01	ks_quality_p_value=0.382869	major_base=G	major_cov=16/8	major_frequency=7.742e-01	minor_base=T	minor_cov=1/6	new_cov=1/6	polymorphism_frequency=2.258e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=16/8	total_cov=19/18
RA	55	.	NC_010473	4658934	0	G	A	bias_e_value=350371	bias_p_value=0.0747677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.017388	frequency=2.000e-01	ks_quality_p_value=0.818731	major_base=G	major_cov=20/12	major_frequency=8.000e-01	minor_base=A	minor_cov=1/7	new_cov=1/7	polymorphism_frequency=2.000e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=20/12	total_cov=21/19
RA	56	.	NC_010473	4658935	0	T	C	bias_e_value=222502	bias_p_value=0.0474809	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.6	fisher_strand_p_value=0.0171129	frequency=3.250e-01	ks_quality_p_value=0.477849	major_base=T	major_cov=18/9	major_frequency=6.750e-01	minor_base=C	minor_cov=3/10	new_cov=3/10	polymorphism_frequency=3.250e-01	polymorphism_score=34.3	prediction=polymorphism	ref_cov=18/9	total_cov=21/19
RA	57	.	NC_010473	4658941	0	A	T	bias_e_value=51483.6	bias_p_value=0.0109864	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.6	fisher_strand_p_value=0.00573567	frequency=3.077e-01	ks_quality_p_value=0.254375	major_base=A	major_cov=18/9	major_frequency=6.923e-01	minor_base=T	minor_cov=2/10	new_cov=2/10	polymorphism_frequency=3.077e-01	polymorphism_score=43.3	prediction=polymorphism	ref_cov=18/9	total_cov=21/19
MC	58	.	NC_010473	1139614	1141026	0	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	59	.	NC_010473	1155447	1160082	0	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	60	.	NC_010473	1380531	1382046	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=13	right_outside_cov=14
MC	61	.	NC_010473	1384901	1385121	0	0	left_inside_cov=13	left_outside_cov=15	right_inside_cov=13	right_outside_cov=14
MC	62	.	NC_010473	2160525	2163778	0	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	63	.	NC_010473	2806542	2807230	0	0	left_inside_cov=0	left_outside_cov=21	right_inside_cov=0	right_outside_cov=19
MC	64	.	NC_010473	3074089	3074262	0	0	left_inside_cov=13	left_outside_cov=14	right_inside_cov=13	right_outside_cov=14
MC	65	.	NC_010473	3170327	3171676	0	1057	left_inside_cov=0	left_outside_cov=40	right_inside_cov=12	right_outside_cov=14
MC	66	.	NC_010473	3917725	3917746	0	0	left_inside_cov=0	left_outside_cov=46	right_inside_cov=0	right_outside_cov=46
MC	67	.	NC_010473	4296510	4297180	0	0	left_inside_cov=0	left_outside_cov=38	right_inside_cov=0	right_outside_cov=38
JC	68	.	NC_010473	1	1	NC_010473	4686137	-1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=23	flanking_left=200	flanking_right=200	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=199	key=NC_010473__1__1__NC_010473__4686137__-1__0____200__200__0__0	max_left=199	max_left_minus=199	max_left_plus=172	max_min_left=96	max_min_left_minus=96	max_min_left_plus=73	max_min_right=97	max_min_right_minus=97	max_min_right_plus=91	max_pos_hash_score=398	max_right=198	max_right_minus=198	max_right_plus=198	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.25	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	69	.	NC_010473	305	1	NC_010473	301	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=13	flanking_left=200	flanking_right=200	frequency=3.043e-01	junction_possible_overlap_registers=193	key=NC_010473__305__1__NC_010473__307__-1__6____200__200__0__0	max_left=166	max_left_minus=0	max_left_plus=166	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=386	max_right=193	max_right_minus=0	max_right_plus=193	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.38	new_junction_read_count=14	polymorphism_frequency=3.043e-01	pos_hash_score=13	prediction=polymorphism	reject=INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=13
JC	70	.	NC_010473	15603	-1	NC_010473	15607	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=15	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=196	key=NC_010473__15603__-1__NC_010473__15604__1__3____200__200__1__1	max_left=179	max_left_minus=0	max_left_plus=179	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=392	max_right=195	max_right_minus=0	max_right_plus=195	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.40	new_junction_read_count=15	polymorphism_frequency=NA	pos_hash_score=15	prediction=unknown	reject=POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	71	.	NC_010473	15812	-1	NC_010473	15816	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=197	key=NC_010473__15812__-1__NC_010473__15814__1__2____200__200__1__1	max_left=139	max_left_minus=0	max_left_plus=139	max_min_left=81	max_min_left_minus=0	max_min_left_plus=81	max_min_right=62	max_min_right_minus=0	max_min_right_plus=62	max_pos_hash_score=394	max_right=168	max_right_minus=0	max_right_plus=168	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	72	.	NC_010473	20352	-1	NC_010473	20356	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__20352__-1__NC_010473__20356__1__0____200__200__1__1	max_left=132	max_left_minus=122	max_left_plus=132	max_min_left=52	max_min_left_minus=52	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=66	max_pos_hash_score=398	max_right=148	max_right_minus=148	max_right_plus=66	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	73	.	NC_010473	31412	-1	NC_010473	31416	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=10	flanking_left=200	flanking_right=200	frequency=2.636e-01	junction_possible_overlap_registers=198	key=NC_010473__31412__-1__NC_010473__31415__1__1____200__200__0__0	max_left=192	max_left_minus=0	max_left_plus=192	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=396	max_right=173	max_right_minus=0	max_right_plus=173	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.26	new_junction_read_count=10	polymorphism_frequency=2.636e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=10
JC	74	.	NC_010473	34380	-1	NC_010473	34384	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.631e-01	junction_possible_overlap_registers=198	key=NC_010473__34380__-1__NC_010473__34383__1__1____200__200__0__0	max_left=138	max_left_minus=110	max_left_plus=138	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=92	max_min_right_minus=92	max_min_right_plus=59	max_pos_hash_score=396	max_right=151	max_right_minus=151	max_right_plus=59	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.631e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=6
JC	75	.	NC_010473	50768	-1	NC_010473	50772	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.116e-01	junction_possible_overlap_registers=197	key=NC_010473__50768__-1__NC_010473__50770__1__2____200__200__0__0	max_left=166	max_left_minus=166	max_left_plus=0	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=394	max_right=138	max_right_minus=138	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.116e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=4
JC	76	.	NC_010473	71261	-1	NC_010473	71265	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.038e-02	junction_possible_overlap_registers=197	key=NC_010473__71261__-1__NC_010473__71263__1__2____200__200__0__0	max_left=134	max_left_minus=99	max_left_plus=134	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=63	max_pos_hash_score=394	max_right=137	max_right_minus=137	max_right_plus=63	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.038e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	77	.	NC_010473	93548	-1	NC_010473	93552	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.007e-01	junction_possible_overlap_registers=196	key=NC_010473__93548__-1__NC_010473__93549__1__3____200__200__0__0	max_left=160	max_left_minus=160	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=392	max_right=122	max_right_minus=122	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.007e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	78	.	NC_010473	95679	-1	NC_010473	95683	1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.855e-01	junction_possible_overlap_registers=195	key=NC_010473__95679__-1__NC_010473__95679__1__4____200__200__0__0	max_left=176	max_left_minus=176	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=390	max_right=181	max_right_minus=181	max_right_plus=0	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.855e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=7
JC	79	.	NC_010473	103633	-1	NC_010473	103637	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.000e-01	junction_possible_overlap_registers=199	key=NC_010473__103633__-1__NC_010473__103637__1__0____200__200__0__0	max_left=151	max_left_minus=0	max_left_plus=151	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=398	max_right=145	max_right_minus=0	max_right_plus=145	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	80	.	NC_010473	110698	-1	NC_010473	110702	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.889e-02	junction_possible_overlap_registers=199	key=NC_010473__110698__-1__NC_010473__110702__1__0____200__200__0__0	max_left=128	max_left_minus=128	max_left_plus=0	max_min_left=100	max_min_left_minus=100	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=398	max_right=178	max_right_minus=178	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.889e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	81	.	NC_010473	120683	-1	NC_010473	120687	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.661e-02	junction_possible_overlap_registers=198	key=NC_010473__120683__-1__NC_010473__120686__1__1____200__200__0__0	max_left=152	max_left_minus=152	max_left_plus=92	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=49	max_min_right_minus=49	max_min_right_plus=0	max_pos_hash_score=396	max_right=171	max_right_minus=49	max_right_plus=171	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.661e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	82	.	NC_010473	133564	-1	NC_010473	133568	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.723e-02	junction_possible_overlap_registers=197	key=NC_010473__133564__-1__NC_010473__133566__1__2____200__200__0__0	max_left=93	max_left_minus=0	max_left_plus=93	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=159	max_right_minus=0	max_right_plus=159	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.723e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=3
JC	83	.	NC_010473	138962	-1	NC_010473	138966	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.007e-01	junction_possible_overlap_registers=196	key=NC_010473__138962__-1__NC_010473__138963__1__3____200__200__0__0	max_left=150	max_left_minus=150	max_left_plus=0	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=0	max_pos_hash_score=392	max_right=115	max_right_minus=115	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.007e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=3
JC	84	.	NC_010473	156453	-1	NC_010473	156457	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.091e-02	junction_possible_overlap_registers=199	key=NC_010473__156453__-1__NC_010473__156457__1__0____200__200__0__0	max_left=89	max_left_minus=89	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=192	max_right_minus=192	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.091e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4
JC	85	.	NC_010473	159608	-1	NC_010473	159612	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.031e-02	junction_possible_overlap_registers=197	key=NC_010473__159608__-1__NC_010473__159610__1__2____200__200__0__0	max_left=183	max_left_minus=183	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=394	max_right=73	max_right_minus=73	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.031e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4
JC	86	.	NC_010473	166731	-1	NC_010473	166735	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.736e-02	junction_possible_overlap_registers=197	key=NC_010473__166731__-1__NC_010473__166733__1__2____200__200__0__0	max_left=197	max_left_minus=0	max_left_plus=197	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=83	max_min_right_minus=0	max_min_right_plus=83	max_pos_hash_score=394	max_right=118	max_right_minus=0	max_right_plus=118	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.736e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=4
JC	87	.	NC_010473	170660	-1	NC_010473	170664	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.324e-02	junction_possible_overlap_registers=198	key=NC_010473__170660__-1__NC_010473__170663__1__1____200__200__0__0	max_left=82	max_left_minus=82	max_left_plus=74	max_min_left=82	max_min_left_minus=82	max_min_left_plus=74	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=396	max_right=164	max_right_minus=116	max_right_plus=164	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.324e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=4
JC	88	.	NC_010473	198331	-1	NC_010473	198336	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__198331__-1__NC_010473__198336__1__0____200__200__1__1	max_left=143	max_left_minus=65	max_left_plus=143	max_min_left=65	max_min_left_minus=65	max_min_left_plus=33	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=398	max_right=199	max_right_minus=199	max_right_plus=168	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	89	.	NC_010473	198544	-1	NC_010473	198549	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=14	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__198544__-1__NC_010473__198548__1__1____200__200__1__1	max_left=183	max_left_minus=0	max_left_plus=183	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=81	max_min_right_minus=0	max_min_right_plus=81	max_pos_hash_score=396	max_right=176	max_right_minus=0	max_right_plus=176	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.37	new_junction_read_count=14	polymorphism_frequency=NA	pos_hash_score=13	prediction=unknown	reject=POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	90	.	NC_010473	198620	-1	NC_010473	198624	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=197	key=NC_010473__198620__-1__NC_010473__198622__1__2____200__200__1__1	max_left=189	max_left_minus=189	max_left_plus=0	max_min_left=55	max_min_left_minus=55	max_min_left_plus=0	max_min_right=91	max_min_right_minus=91	max_min_right_plus=0	max_pos_hash_score=394	max_right=137	max_right_minus=137	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	91	.	NC_010473	201516	-1	NC_010473	201520	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__201516__-1__NC_010473__201520__1__0____200__200__1__1	max_left=199	max_left_minus=161	max_left_plus=199	max_min_left=40	max_min_left_minus=0	max_min_left_plus=40	max_min_right=70	max_min_right_minus=41	max_min_right_plus=70	max_pos_hash_score=398	max_right=195	max_right_minus=41	max_right_plus=195	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	92	.	NC_010473	201569	-1	NC_010473	201573	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__201569__-1__NC_010473__201572__1__1____200__200__1__1	max_left=188	max_left_minus=188	max_left_plus=146	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=56	max_min_right_minus=11	max_min_right_plus=56	max_pos_hash_score=396	max_right=157	max_right_minus=11	max_right_plus=157	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	93	.	NC_010473	202635	-1	NC_010473	202639	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=3.571e-01	junction_possible_overlap_registers=199	key=NC_010473__202635__-1__NC_010473__202639__1__0____200__200__1__0	max_left=194	max_left_minus=194	max_left_plus=73	max_min_left=80	max_min_left_minus=80	max_min_left_plus=73	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=398	max_right=126	max_right_minus=120	max_right_plus=126	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=3.571e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.23	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=9	side_2_redundant=0	total_non_overlap_reads=5
JC	94	.	NC_010473	202867	-1	NC_010473	202871	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.450e-02	junction_possible_overlap_registers=196	key=NC_010473__202867__-1__NC_010473__202868__1__3____200__200__0__1	max_left=171	max_left_minus=0	max_left_plus=171	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=81	max_min_right_minus=0	max_min_right_plus=81	max_pos_hash_score=392	max_right=157	max_right_minus=0	max_right_plus=157	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.450e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	95	.	NC_010473	205297	-1	NC_010473	205301	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.711e-02	junction_possible_overlap_registers=198	key=NC_010473__205297__-1__NC_010473__205300__1__1____200__200__0__0	max_left=139	max_left_minus=139	max_left_plus=0	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=396	max_right=151	max_right_minus=151	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.711e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	96	.	NC_010473	216897	-1	NC_010473	216901	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.033e-01	junction_possible_overlap_registers=196	key=NC_010473__216897__-1__NC_010473__216898__1__3____200__200__0__0	max_left=152	max_left_minus=152	max_left_plus=99	max_min_left=99	max_min_left_minus=13	max_min_left_plus=99	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=392	max_right=182	max_right_minus=182	max_right_plus=109	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.033e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	97	.	NC_010473	218238	1	NC_010473	315947	-1	0	alignment_overlap=9	coverage_minus=24	coverage_plus=27	flanking_left=200	flanking_right=200	frequency=5.335e-01	junction_possible_overlap_registers=190	key=NC_010473__218238__1__NC_010473__315956__-1__9____200__200__0__0	max_left=190	max_left_minus=189	max_left_plus=190	max_min_left=94	max_min_left_minus=94	max_min_left_plus=88	max_min_right=87	max_min_right_minus=87	max_min_right_plus=72	max_pos_hash_score=380	max_right=188	max_right_minus=181	max_right_plus=188	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.45	new_junction_read_count=53	polymorphism_frequency=5.335e-01	pos_hash_score=46	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=9	side_1_possible_overlap_registers=199	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=190	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=51
JC	98	.	NC_010473	224361	1	NC_010473	224357	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=7.331e-02	junction_possible_overlap_registers=193	key=NC_010473__224361__1__NC_010473__224363__-1__6____200__200__0__0	max_left=185	max_left_minus=0	max_left_plus=185	max_min_left=83	max_min_left_minus=0	max_min_left_plus=83	max_min_right=91	max_min_right_minus=0	max_min_right_plus=91	max_pos_hash_score=386	max_right=171	max_right_minus=0	max_right_plus=171	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=7.331e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.01	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.07	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=77	side_2_redundant=0	total_non_overlap_reads=6
JC	99	.	NC_010473	241430	1	NC_010473	241426	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=1.335e-01	junction_possible_overlap_registers=192	key=NC_010473__241430__1__NC_010473__241433__-1__7____200__200__0__0	max_left=177	max_left_minus=128	max_left_plus=177	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=79	max_min_right_minus=70	max_min_right_plus=79	max_pos_hash_score=384	max_right=157	max_right_minus=70	max_right_plus=157	neg_log10_pos_hash_p_value=4.1	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=1.335e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.64	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=63	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.51	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=8
JC	100	.	NC_010473	248338	-1	NC_010473	248342	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.225e-01	junction_possible_overlap_registers=198	key=NC_010473__248339__-1__NC_010473__248342__1__1____200__200__1__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=150	max_right_minus=150	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.225e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=5
JC	101	.	NC_010473	249301	-1	NC_010473	249305	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.735e-02	junction_possible_overlap_registers=197	key=NC_010473__249301__-1__NC_010473__249303__1__2____200__200__0__0	max_left=186	max_left_minus=186	max_left_plus=0	max_min_left=87	max_min_left_minus=87	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=394	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=6.735e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.17	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.21	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=5
JC	102	.	NC_010473	255005	-1	NC_010473	255010	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=4.255e-02	junction_possible_overlap_registers=199	key=NC_010473__255005__-1__NC_010473__255010__1__0____200__200__0__0	max_left=139	max_left_minus=0	max_left_plus=139	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=62	max_min_right_minus=0	max_min_right_plus=62	max_pos_hash_score=398	max_right=188	max_right_minus=0	max_right_plus=188	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=4.255e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.35	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.35	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=90	side_2_redundant=0	total_non_overlap_reads=4
JC	103	.	NC_010473	255009	-1	NC_010473	255013	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=6.383e-02	junction_possible_overlap_registers=199	key=NC_010473__255009__-1__NC_010473__255013__1__0____200__200__0__0	max_left=94	max_left_minus=0	max_left_plus=94	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=181	max_right_minus=0	max_right_plus=181	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=6.383e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.27	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=87	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.32	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=4
JC	104	.	NC_010473	258231	-1	NC_010473	258235	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=4.494e-02	junction_possible_overlap_registers=199	key=NC_010473__258231__-1__NC_010473__258235__1__0____200__200__0__0	max_left=184	max_left_minus=184	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=398	max_right=79	max_right_minus=79	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=4.494e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.22	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.22	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=4
JC	105	.	NC_010473	258366	-1	NC_010473	258370	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=4.813e-02	junction_possible_overlap_registers=197	key=NC_010473__258366__-1__NC_010473__258368__1__2____200__200__0__0	max_left=71	max_left_minus=71	max_left_plus=0	max_min_left=71	max_min_left_minus=71	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=183	max_right_minus=183	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=4.813e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.06	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.11	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=4
JC	106	.	NC_010473	260253	-1	NC_010473	260257	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=9.625e-02	junction_possible_overlap_registers=197	key=NC_010473__260253__-1__NC_010473__260255__1__2____200__200__0__0	max_left=183	max_left_minus=0	max_left_plus=183	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=83	max_min_right_minus=0	max_min_right_plus=83	max_pos_hash_score=394	max_right=157	max_right_minus=0	max_right_plus=157	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=9.625e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.01	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=77	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.95	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=8
JC	107	.	NC_010473	262025	-1	NC_010473	263472	1	0	alignment_overlap=3	coverage_minus=20	coverage_plus=25	flanking_left=200	flanking_right=200	frequency=5.916e-01	junction_possible_overlap_registers=196	key=NC_010473__262025__-1__NC_010473__263469__1__3____200__200__0__0	max_left=194	max_left_minus=177	max_left_plus=194	max_min_left=96	max_min_left_minus=93	max_min_left_plus=96	max_min_right=91	max_min_right_minus=89	max_min_right_plus=91	max_pos_hash_score=392	max_right=195	max_right_minus=195	max_right_plus=192	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.22	new_junction_read_count=46	polymorphism_frequency=5.916e-01	pos_hash_score=43	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=45
JC	108	.	NC_010473	262674	-1	NC_010473	262678	1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=195	key=NC_010473__262674__-1__NC_010473__262674__1__4____200__200__1__1	max_left=171	max_left_minus=171	max_left_plus=93	max_min_left=93	max_min_left_minus=70	max_min_left_plus=93	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=390	max_right=173	max_right_minus=173	max_right_plus=105	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=8	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	109	.	NC_010473	265337	-1	NC_010473	265341	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=5.346e-02	junction_possible_overlap_registers=198	key=NC_010473__265337__-1__NC_010473__265340__1__1____200__200__0__0	max_left=94	max_left_minus=91	max_left_plus=94	max_min_left=94	max_min_left_minus=91	max_min_left_plus=94	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=396	max_right=139	max_right_minus=139	max_right_plus=108	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=5.346e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.85	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.86	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=4
JC	110	.	NC_010473	265340	1	NC_010473	2849802	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.978e-02	junction_possible_overlap_registers=198	key=NC_010473__265340__1__NC_010473__2849803__-1__1____200__200__0__0	max_left=139	max_left_minus=108	max_left_plus=139	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=91	max_pos_hash_score=396	max_right=94	max_right_minus=94	max_right_plus=91	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=6.978e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.88	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	111	.	NC_010473	269646	-1	NC_010473	269650	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=10	flanking_left=200	flanking_right=200	frequency=1.333e-01	junction_possible_overlap_registers=199	key=NC_010473__269646__-1__NC_010473__269650__1__0____200__200__0__0	max_left=178	max_left_minus=49	max_left_plus=178	max_min_left=100	max_min_left_minus=49	max_min_left_plus=100	max_min_right=52	max_min_right_minus=0	max_min_right_plus=52	max_pos_hash_score=398	max_right=176	max_right_minus=156	max_right_plus=176	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=1.333e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.85	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.88	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=11
JC	112	.	NC_010473	270856	-1	NC_010473	270860	1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.505e-02	junction_possible_overlap_registers=198	key=NC_010473__270856__-1__NC_010473__270859__1__1____200__200__0__0	max_left=177	max_left_minus=177	max_left_plus=0	max_min_left=64	max_min_left_minus=64	max_min_left_plus=0	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=396	max_right=179	max_right_minus=179	max_right_plus=0	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=8.505e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.98	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.97	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=7
JC	113	.	NC_010473	276303	1	NC_010473	3211930	1	0	alignment_overlap=1	coverage_minus=25	coverage_plus=29	flanking_left=200	flanking_right=200	frequency=6.924e-01	junction_possible_overlap_registers=198	key=NC_010473__276303__1__NC_010473__3211929__1__1____200__200__0__1	max_left=200	max_left_minus=200	max_left_plus=195	max_min_left=97	max_min_left_minus=97	max_min_left_plus=86	max_min_right=97	max_min_right_minus=91	max_min_right_plus=97	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=193	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.47	new_junction_read_count=56	polymorphism_frequency=6.924e-01	pos_hash_score=49	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=54
JC	114	.	NC_010473	276312	-1	NC_010473	3199469	1	0	alignment_overlap=3	coverage_minus=23	coverage_plus=26	flanking_left=200	flanking_right=200	frequency=6.169e-01	junction_possible_overlap_registers=196	key=NC_010473__276312__-1__NC_010473__3199466__1__3____200__200__0__0	max_left=195	max_left_minus=194	max_left_plus=195	max_min_left=96	max_min_left_minus=95	max_min_left_plus=96	max_min_right=87	max_min_right_minus=85	max_min_right_plus=87	max_pos_hash_score=392	max_right=198	max_right_minus=197	max_right_plus=198	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.38	new_junction_read_count=52	polymorphism_frequency=6.169e-01	pos_hash_score=49	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=49
JC	115	.	NC_010473	277864	-1	NC_010473	277868	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=8.811e-02	junction_possible_overlap_registers=196	key=NC_010473__277864__-1__NC_010473__277865__1__3____200__200__0__0	max_left=193	max_left_minus=0	max_left_plus=193	max_min_left=63	max_min_left_minus=0	max_min_left_plus=63	max_min_right=3	max_min_right_minus=0	max_min_right_plus=3	max_pos_hash_score=392	max_right=180	max_right_minus=0	max_right_plus=180	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=8.811e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.90	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=5
JC	116	.	NC_010473	279723	-1	NC_010473	279727	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1.094e-01	junction_possible_overlap_registers=196	key=NC_010473__279723__-1__NC_010473__279724__1__3____200__200__0__0	max_left=158	max_left_minus=52	max_left_plus=158	max_min_left=91	max_min_left_minus=52	max_min_left_plus=91	max_min_right=98	max_min_right_minus=0	max_min_right_plus=98	max_pos_hash_score=392	max_right=176	max_right_minus=160	max_right_plus=176	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.26	new_junction_read_count=10	polymorphism_frequency=1.094e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.17	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=83	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.15	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=10
JC	117	.	NC_010473	282963	-1	NC_010473	282967	1	0	alignment_overlap=2	coverage_minus=8	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.881e-02	junction_possible_overlap_registers=197	key=NC_010473__282963__-1__NC_010473__282965__1__2____200__200__0__0	max_left=194	max_left_minus=194	max_left_plus=61	max_min_left=80	max_min_left_minus=80	max_min_left_plus=61	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=394	max_right=190	max_right_minus=190	max_right_plus=138	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=9.881e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.14	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.19	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=9
JC	118	.	NC_010473	284562	-1	NC_010473	284566	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.060e-01	junction_possible_overlap_registers=198	key=NC_010473__284562__-1__NC_010473__284565__1__1____200__200__0__0	max_left=176	max_left_minus=176	max_left_plus=64	max_min_left=70	max_min_left_minus=70	max_min_left_plus=64	max_min_right=60	max_min_right_minus=60	max_min_right_plus=0	max_pos_hash_score=396	max_right=177	max_right_minus=177	max_right_plus=135	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=1.060e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.43	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.44	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=9
JC	119	.	NC_010473	284611	1	NC_010473	284607	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=3.903e-02	junction_possible_overlap_registers=195	key=NC_010473__284611__1__NC_010473__284611__-1__4____200__200__0__0	max_left=190	max_left_minus=190	max_left_plus=180	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=16	max_min_right_minus=6	max_min_right_plus=16	max_pos_hash_score=390	max_right=109	max_right_minus=109	max_right_plus=16	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=3.903e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.61	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=100	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.64	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=4
JC	120	.	NC_010473	285519	1	NC_010473	319815	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=27	flanking_left=200	flanking_right=200	frequency=4.071e-01	junction_possible_overlap_registers=199	key=NC_010473__285519__1__NC_010473__319815__1__0____200__200__0__1	max_left=200	max_left_minus=171	max_left_plus=200	max_min_left=99	max_min_left_minus=99	max_min_left_plus=96	max_min_right=89	max_min_right_minus=72	max_min_right_plus=89	max_pos_hash_score=398	max_right=195	max_right_minus=169	max_right_plus=195	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=46	polymorphism_frequency=4.071e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.75	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44
JC	121	.	NC_010473	285525	-1	NC_010473	321143	-1	0	alignment_overlap=2	coverage_minus=24	coverage_plus=14	flanking_left=200	flanking_right=200	frequency=3.820e-01	junction_possible_overlap_registers=197	key=NC_010473__285525__-1__NC_010473__321145__-1__2____200__200__0__1	max_left=195	max_left_minus=187	max_left_plus=195	max_min_left=98	max_min_left_minus=90	max_min_left_plus=98	max_min_right=99	max_min_right_minus=95	max_min_right_plus=99	max_pos_hash_score=394	max_right=194	max_right_minus=194	max_right_plus=187	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.08	new_junction_read_count=41	polymorphism_frequency=3.820e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.75	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=67	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	122	.	NC_010473	288036	-1	NC_010473	288040	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=8.480e-02	junction_possible_overlap_registers=196	key=NC_010473__288036__-1__NC_010473__288037__1__3____200__200__0__0	max_left=173	max_left_minus=8	max_left_plus=173	max_min_left=81	max_min_left_minus=8	max_min_left_plus=81	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=392	max_right=191	max_right_minus=191	max_right_plus=185	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=8.480e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.30	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.28	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=7
JC	123	.	NC_010473	289648	-1	NC_010473	289652	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=5.155e-02	junction_possible_overlap_registers=199	key=NC_010473__289648__-1__NC_010473__289652__1__0____200__200__0__0	max_left=195	max_left_minus=195	max_left_plus=0	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=0	max_pos_hash_score=398	max_right=139	max_right_minus=139	max_right_plus=0	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=5.155e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.37	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.43	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=93	side_2_redundant=0	total_non_overlap_reads=5
JC	124	.	NC_010473	290559	-1	NC_010473	290563	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__290559__-1__NC_010473__290562__1__1____200__200__1__1	max_left=160	max_left_minus=160	max_left_plus=0	max_min_left=42	max_min_left_minus=42	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=396	max_right=183	max_right_minus=183	max_right_plus=0	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=8	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	125	.	NC_010473	290727	-1	NC_010473	290731	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=197	key=NC_010473__290727__-1__NC_010473__290729__1__2____200__200__1__1	max_left=111	max_left_minus=111	max_left_plus=0	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=394	max_right=140	max_right_minus=140	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	126	.	NC_010473	293727	-1	NC_010473	293732	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=5.314e-02	junction_possible_overlap_registers=195	key=NC_010473__293727__-1__NC_010473__293728__1__4____200__200__0__0	max_left=188	max_left_minus=139	max_left_plus=188	max_min_left=59	max_min_left_minus=59	max_min_left_plus=3	max_min_right=95	max_min_right_minus=57	max_min_right_plus=95	max_pos_hash_score=390	max_right=190	max_right_minus=135	max_right_plus=190	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=5.314e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.37	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=91	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.37	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=5
JC	127	.	NC_010473	294887	-1	NC_010473	294891	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.513e-02	junction_possible_overlap_registers=197	key=NC_010473__294887__-1__NC_010473__294889__1__2____200__200__0__0	max_left=187	max_left_minus=187	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=394	max_right=165	max_right_minus=165	max_right_plus=0	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=6.513e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.69	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=103	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.61	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=7
JC	128	.	NC_010473	296335	-1	NC_010473	296341	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=8.383e-02	junction_possible_overlap_registers=199	key=NC_010473__296335__-1__NC_010473__296341__1__0____200__200__0__0	max_left=149	max_left_minus=149	max_left_plus=137	max_min_left=84	max_min_left_minus=84	max_min_left_plus=0	max_min_right=69	max_min_right_minus=55	max_min_right_plus=69	max_pos_hash_score=398	max_right=116	max_right_minus=116	max_right_plus=69	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=8.383e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.96	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=5
JC	129	.	NC_010473	296335	1	NC_010473	296331	-1	0	alignment_overlap=4	coverage_minus=8	coverage_plus=14	flanking_left=200	flanking_right=200	frequency=2.187e-01	junction_possible_overlap_registers=195	key=NC_010473__296335__1__NC_010473__296335__-1__4____200__200__0__0	max_left=193	max_left_minus=175	max_left_plus=193	max_min_left=69	max_min_left_minus=68	max_min_left_plus=69	max_min_right=89	max_min_right_minus=89	max_min_right_plus=85	max_pos_hash_score=390	max_right=170	max_right_minus=164	max_right_plus=170	neg_log10_pos_hash_p_value=1.4	new_junction_coverage=0.61	new_junction_read_count=23	polymorphism_frequency=2.187e-01	pos_hash_score=20	prediction=polymorphism	reject=POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.22	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.16	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=22
JC	130	.	NC_010473	305827	-1	NC_010473	305832	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=5.808e-02	junction_possible_overlap_registers=197	key=NC_010473__305827__-1__NC_010473__305830__1__2____200__200__0__0	max_left=160	max_left_minus=0	max_left_plus=160	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=39	max_min_right_minus=0	max_min_right_plus=39	max_pos_hash_score=394	max_right=175	max_right_minus=0	max_right_plus=175	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=5.808e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.11	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.16	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=82	side_2_redundant=0	total_non_overlap_reads=4
JC	131	.	NC_010473	306751	1	NC_010473	4640589	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=17	flanking_left=200	flanking_right=200	frequency=5.139e-01	junction_possible_overlap_registers=199	key=NC_010473__306751__1__NC_010473__4640589__1__0____200__200__0__1	max_left=200	max_left_minus=187	max_left_plus=200	max_min_left=95	max_min_left_minus=92	max_min_left_plus=95	max_min_right=93	max_min_right_minus=93	max_min_right_plus=89	max_pos_hash_score=398	max_right=196	max_right_minus=196	max_right_plus=193	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.97	new_junction_read_count=37	polymorphism_frequency=5.139e-01	pos_hash_score=31	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=34
JC	132	.	NC_010473	306759	-1	NC_010473	3211929	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=21	flanking_left=200	flanking_right=200	frequency=5.476e-01	junction_possible_overlap_registers=199	key=NC_010473__306759__-1__NC_010473__3211929__1__0____200__200__0__1	max_left=197	max_left_minus=190	max_left_plus=197	max_min_left=94	max_min_left_minus=94	max_min_left_plus=87	max_min_right=96	max_min_right_minus=96	max_min_right_plus=64	max_pos_hash_score=398	max_right=196	max_right_minus=178	max_right_plus=196	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=46	polymorphism_frequency=5.476e-01	pos_hash_score=40	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=45
JC	133	.	NC_010473	307776	-1	NC_010473	307780	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=4.819e-02	junction_possible_overlap_registers=199	key=NC_010473__307776__-1__NC_010473__307780__1__0____200__200__0__0	max_left=161	max_left_minus=133	max_left_plus=161	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=63	max_pos_hash_score=398	max_right=99	max_right_minus=99	max_right_plus=63	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=4.819e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.06	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.06	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	134	.	NC_010473	309424	-1	NC_010473	309428	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=9.398e-02	junction_possible_overlap_registers=196	key=NC_010473__309424__-1__NC_010473__309425__1__3____200__200__0__0	max_left=137	max_left_minus=0	max_left_plus=137	max_min_left=69	max_min_left_minus=0	max_min_left_plus=69	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=392	max_right=165	max_right_minus=0	max_right_plus=165	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=9.398e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.77	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=68	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.80	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=7
JC	135	.	NC_010473	314365	-1	NC_010473	314369	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=5.373e-02	junction_possible_overlap_registers=197	key=NC_010473__314365__-1__NC_010473__314367__1__2____200__200__0__0	max_left=132	max_left_minus=47	max_left_plus=132	max_min_left=90	max_min_left_minus=47	max_min_left_plus=90	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=394	max_right=151	max_right_minus=151	max_right_plus=131	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=5.373e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.32	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=89	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.32	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=5
JC	136	.	NC_010473	318571	1	NC_010473	318567	-1	0	alignment_overlap=7	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.055e-01	junction_possible_overlap_registers=192	key=NC_010473__318571__1__NC_010473__318574__-1__7____200__200__0__0	max_left=132	max_left_minus=132	max_left_plus=0	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=384	max_right=180	max_right_minus=180	max_right_plus=0	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.22	new_junction_read_count=8	polymorphism_frequency=2.055e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=8
JC	137	.	NC_010473	318572	1	NC_010473	318567	-1	0	alignment_overlap=6	coverage_minus=10	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.498e-01	junction_possible_overlap_registers=193	key=NC_010473__318572__1__NC_010473__318573__-1__6____200__200__0__0	max_left=181	max_left_minus=181	max_left_plus=0	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=0	max_pos_hash_score=386	max_right=148	max_right_minus=148	max_right_plus=0	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.27	new_junction_read_count=10	polymorphism_frequency=2.498e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=10
JC	138	.	NC_010473	320004	-1	NC_010473	320008	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__320004__-1__NC_010473__320007__1__1____200__200__0__1	max_left=169	max_left_minus=63	max_left_plus=169	max_min_left=63	max_min_left_minus=63	max_min_left_plus=58	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=396	max_right=184	max_right_minus=145	max_right_plus=184	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	139	.	NC_010473	320143	-1	NC_010473	320147	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__320143__-1__NC_010473__320146__1__1____200__200__1__1	max_left=162	max_left_minus=162	max_left_plus=60	max_min_left=60	max_min_left_minus=0	max_min_left_plus=60	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=396	max_right=143	max_right_minus=58	max_right_plus=143	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	140	.	NC_010473	320249	-1	NC_010473	320253	1	0	alignment_overlap=2	coverage_minus=15	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=197	key=NC_010473__320249__-1__NC_010473__320251__1__2____200__200__1__1	max_left=195	max_left_minus=195	max_left_plus=191	max_min_left=98	max_min_left_minus=98	max_min_left_plus=64	max_min_right=93	max_min_right_minus=93	max_min_right_plus=78	max_pos_hash_score=394	max_right=191	max_right_minus=191	max_right_plus=129	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.50	new_junction_read_count=19	polymorphism_frequency=NA	pos_hash_score=18	prediction=unknown	reject=POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	141	.	NC_010473	320303	-1	NC_010473	320307	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__320303__-1__NC_010473__320307__1__0____200__200__1__1	max_left=181	max_left_minus=181	max_left_plus=170	max_min_left=78	max_min_left_minus=78	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=29	max_pos_hash_score=398	max_right=160	max_right_minus=160	max_right_plus=29	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	142	.	NC_010473	320638	-1	NC_010473	320642	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=196	key=NC_010473__320638__-1__NC_010473__320639__1__3____200__200__1__1	max_left=131	max_left_minus=131	max_left_plus=0	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=392	max_right=188	max_right_minus=188	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	143	.	NC_010473	320649	-1	NC_010473	320653	1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__320649__-1__NC_010473__320652__1__1____200__200__1__1	max_left=180	max_left_minus=180	max_left_plus=36	max_min_left=95	max_min_left_minus=95	max_min_left_plus=36	max_min_right=97	max_min_right_minus=97	max_min_right_plus=0	max_pos_hash_score=396	max_right=189	max_right_minus=189	max_right_plus=162	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.45	new_junction_read_count=17	polymorphism_frequency=NA	pos_hash_score=15	prediction=unknown	reject=POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=15
JC	144	.	NC_010473	325331	1	NC_010473	325327	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.406e-02	junction_possible_overlap_registers=194	key=NC_010473__325331__1__NC_010473__325332__-1__5____200__200__0__0	max_left=128	max_left_minus=69	max_left_plus=128	max_min_left=69	max_min_left_minus=69	max_min_left_plus=29	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=388	max_right=166	max_right_minus=126	max_right_plus=166	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.406e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	145	.	NC_010473	341682	-1	NC_010473	341686	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=9.052e-02	junction_possible_overlap_registers=196	key=NC_010473__341682__-1__NC_010473__341683__1__3____200__200__0__0	max_left=181	max_left_minus=0	max_left_plus=181	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_pos_hash_score=392	max_right=148	max_right_minus=0	max_right_plus=148	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.052e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4
JC	146	.	NC_010473	341757	-1	NC_010473	341761	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.499e-02	junction_possible_overlap_registers=195	key=NC_010473__341757__-1__NC_010473__341757__1__4____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=0	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=390	max_right=131	max_right_minus=131	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.499e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	147	.	NC_010473	357865	-1	NC_010473	357869	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.076e-01	junction_possible_overlap_registers=197	key=NC_010473__357865__-1__NC_010473__357867__1__2____200__200__0__0	max_left=145	max_left_minus=145	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=0	max_pos_hash_score=394	max_right=123	max_right_minus=123	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.076e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=3
JC	148	.	NC_010473	366377	1	NC_010473	366373	-1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=2.115e-01	junction_possible_overlap_registers=194	key=NC_010473__366377__1__NC_010473__366378__-1__5____200__200__0__0	max_left=173	max_left_minus=86	max_left_plus=173	max_min_left=86	max_min_left_minus=86	max_min_left_plus=84	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=388	max_right=153	max_right_minus=107	max_right_plus=153	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=2.115e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=9
JC	149	.	NC_010473	397430	-1	NC_010473	397436	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.844e-02	junction_possible_overlap_registers=198	key=NC_010473__397430__-1__NC_010473__397435__1__1____200__200__0__0	max_left=47	max_left_minus=47	max_left_plus=0	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=396	max_right=167	max_right_minus=167	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.844e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	150	.	NC_010473	406822	-1	NC_010473	406827	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.184e-02	junction_possible_overlap_registers=195	key=NC_010473__406822__-1__NC_010473__406823__1__4____200__200__0__0	max_left=134	max_left_minus=134	max_left_plus=0	max_min_left=63	max_min_left_minus=63	max_min_left_plus=0	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=390	max_right=138	max_right_minus=138	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.184e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	151	.	NC_010473	415744	-1	NC_010473	415748	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.143e-02	junction_possible_overlap_registers=199	key=NC_010473__415744__-1__NC_010473__415748__1__0____200__200__0__0	max_left=158	max_left_minus=0	max_left_plus=158	max_min_left=19	max_min_left_minus=0	max_min_left_plus=19	max_min_right=48	max_min_right_minus=0	max_min_right_plus=48	max_pos_hash_score=398	max_right=180	max_right_minus=0	max_right_plus=180	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.143e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	152	.	NC_010473	417703	-1	NC_010473	417707	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.334e-02	junction_possible_overlap_registers=198	key=NC_010473__417703__-1__NC_010473__417706__1__1____200__200__0__0	max_left=130	max_left_minus=130	max_left_plus=105	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=97	max_min_right_minus=93	max_min_right_plus=97	max_pos_hash_score=396	max_right=97	max_right_minus=93	max_right_plus=97	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.334e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	153	.	NC_010473	445698	-1	NC_010473	445703	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.345e-01	junction_possible_overlap_registers=195	key=NC_010473__445698__-1__NC_010473__445699__1__4____200__200__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=55	max_min_right_minus=0	max_min_right_plus=55	max_pos_hash_score=390	max_right=194	max_right_minus=0	max_right_plus=194	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.345e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=6
JC	154	.	NC_010473	449468	-1	NC_010473	449472	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=5.910e-02	junction_possible_overlap_registers=197	key=NC_010473__449468__-1__NC_010473__449470__1__2____200__200__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=0	max_pos_hash_score=394	max_right=147	max_right_minus=147	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.910e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	155	.	NC_010473	460416	1	NC_010473	460412	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.116e-02	junction_possible_overlap_registers=191	key=NC_010473__460416__1__NC_010473__460420__-1__8____200__200__0__0	max_left=110	max_left_minus=51	max_left_plus=110	max_min_left=61	max_min_left_minus=51	max_min_left_plus=61	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=382	max_right=141	max_right_minus=141	max_right_plus=133	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.116e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=8	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=191	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	156	.	NC_010473	465047	-1	NC_010473	465051	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__465049__-1__NC_010473__465051__1__2____200__200__1__0	max_left=152	max_left_minus=117	max_left_plus=152	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=69	max_pos_hash_score=394	max_right=84	max_right_minus=84	max_right_plus=69	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	157	.	NC_010473	471143	-1	NC_010473	471147	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.413e-02	junction_possible_overlap_registers=197	key=NC_010473__471143__-1__NC_010473__471145__1__2____200__200__0__0	max_left=141	max_left_minus=121	max_left_plus=141	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=87	max_min_right_minus=76	max_min_right_plus=87	max_pos_hash_score=394	max_right=87	max_right_minus=76	max_right_plus=87	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.413e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=3
JC	158	.	NC_010473	472477	-1	NC_010473	472481	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.832e-02	junction_possible_overlap_registers=197	key=NC_010473__472477__-1__NC_010473__472479__1__2____200__200__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=82	max_min_left_minus=0	max_min_left_plus=82	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=394	max_right=168	max_right_minus=0	max_right_plus=168	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.832e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	159	.	NC_010473	474132	-1	NC_010473	474136	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.122e-02	junction_possible_overlap_registers=199	key=NC_010473__474132__-1__NC_010473__474136__1__0____200__200__0__0	max_left=140	max_left_minus=63	max_left_plus=140	max_min_left=99	max_min_left_minus=63	max_min_left_plus=99	max_min_right=59	max_min_right_minus=0	max_min_right_plus=59	max_pos_hash_score=398	max_right=137	max_right_minus=137	max_right_plus=101	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.122e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	160	.	NC_010473	483430	-1	NC_010473	483434	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.154e-01	junction_possible_overlap_registers=197	key=NC_010473__483430__-1__NC_010473__483432__1__2____200__200__0__0	max_left=176	max_left_minus=176	max_left_plus=92	max_min_left=92	max_min_left_minus=63	max_min_left_plus=92	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=394	max_right=160	max_right_minus=160	max_right_plus=106	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.154e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=5
JC	161	.	NC_010473	488763	-1	NC_010473	488767	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.027e-01	junction_possible_overlap_registers=196	key=NC_010473__488763__-1__NC_010473__488764__1__3____200__200__0__0	max_left=93	max_left_minus=93	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=175	max_right_minus=175	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.027e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	162	.	NC_010473	514202	-1	NC_010473	514206	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__514202__-1__NC_010473__514205__1__1____200__200__1__1	max_left=180	max_left_minus=180	max_left_plus=62	max_min_left=98	max_min_left_minus=98	max_min_left_plus=62	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=139	max_right_minus=118	max_right_plus=139	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	163	.	NC_010473	515389	-1	NC_010473	515394	1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__515392__-1__NC_010473__515394__1__3____200__200__1__0	max_left=121	max_left_minus=121	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=86	max_min_right_minus=86	max_min_right_plus=0	max_pos_hash_score=392	max_right=162	max_right_minus=162	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	164	.	NC_010473	517007	-1	NC_010473	517011	1	0	alignment_overlap=3	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__517010__-1__NC_010473__517011__1__3____200__200__1__0	max_left=174	max_left_minus=174	max_left_plus=0	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=392	max_right=186	max_right_minus=186	max_right_plus=0	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.000e+00	pos_hash_score=8	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=8
JC	165	.	NC_010473	520453	-1	NC_010473	520457	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__520453__-1__NC_010473__520457__1__0____200__200__1__0	max_left=149	max_left_minus=149	max_left_plus=0	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=398	max_right=116	max_right_minus=116	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	166	.	NC_010473	522741	-1	NC_010473	522746	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=195	key=NC_010473__522745__-1__NC_010473__522746__1__4____200__200__1__0	max_left=164	max_left_minus=150	max_left_plus=164	max_min_left=58	max_min_left_minus=58	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=34	max_pos_hash_score=390	max_right=138	max_right_minus=138	max_right_plus=34	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=4	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	167	.	NC_010473	524395	-1	NC_010473	524400	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__524398__-1__NC_010473__524400__1__3____200__200__1__0	max_left=160	max_left_minus=160	max_left_plus=0	max_min_left=99	max_min_left_minus=99	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=0	max_pos_hash_score=392	max_right=101	max_right_minus=101	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	168	.	NC_010473	525073	-1	NC_010473	525077	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__525075__-1__NC_010473__525077__1__2____200__200__1__0	max_left=137	max_left_minus=137	max_left_plus=91	max_min_left=91	max_min_left_minus=55	max_min_left_plus=91	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=394	max_right=143	max_right_minus=143	max_right_plus=112	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	169	.	NC_010473	525985	-1	NC_010473	525989	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__525988__-1__NC_010473__525989__1__3____200__200__1__0	max_left=164	max_left_minus=69	max_left_plus=164	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=392	max_right=128	max_right_minus=128	max_right_plus=97	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	170	.	NC_010473	528501	-1	NC_010473	528505	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__528501__-1__NC_010473__528505__1__0____200__200__1__0	max_left=134	max_left_minus=134	max_left_plus=0	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=398	max_right=188	max_right_minus=188	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	171	.	NC_010473	534712	-1	NC_010473	534716	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__534715__-1__NC_010473__534716__1__3____200__200__1__0	max_left=72	max_left_minus=72	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=174	max_right_minus=174	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	172	.	NC_010473	545807	-1	NC_010473	545814	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__545810__-1__NC_010473__545814__1__3____200__200__1__0	max_left=78	max_left_minus=78	max_left_plus=0	max_min_left=78	max_min_left_minus=78	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=172	max_right_minus=172	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	173	.	NC_010473	548295	-1	NC_010473	548299	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__548296__-1__NC_010473__548299__1__1____200__200__1__0	max_left=129	max_left_minus=129	max_left_plus=0	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=0	max_pos_hash_score=396	max_right=156	max_right_minus=156	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	174	.	NC_010473	551596	-1	NC_010473	551600	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__551597__-1__NC_010473__551600__1__1____200__200__1__0	max_left=181	max_left_minus=181	max_left_plus=168	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=47	max_min_right_minus=10	max_min_right_plus=47	max_pos_hash_score=396	max_right=112	max_right_minus=10	max_right_plus=112	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	175	.	NC_010473	554094	-1	NC_010473	554098	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__554095__-1__NC_010473__554098__1__1____200__200__1__0	max_left=146	max_left_minus=74	max_left_plus=146	max_min_left=74	max_min_left_minus=74	max_min_left_plus=67	max_min_right=84	max_min_right_minus=0	max_min_right_plus=84	max_pos_hash_score=396	max_right=132	max_right_minus=128	max_right_plus=132	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	176	.	NC_010473	556237	-1	NC_010473	556241	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__556239__-1__NC_010473__556241__1__2____200__200__1__0	max_left=129	max_left_minus=129	max_left_plus=106	max_min_left=91	max_min_left_minus=71	max_min_left_plus=91	max_min_right=87	max_min_right_minus=69	max_min_right_plus=87	max_pos_hash_score=394	max_right=192	max_right_minus=129	max_right_plus=192	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=6
JC	177	.	NC_010473	557801	-1	NC_010473	557805	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__557804__-1__NC_010473__557805__1__3____200__200__1__0	max_left=170	max_left_minus=133	max_left_plus=170	max_min_left=47	max_min_left_minus=17	max_min_left_plus=47	max_min_right=64	max_min_right_minus=64	max_min_right_plus=39	max_pos_hash_score=392	max_right=181	max_right_minus=181	max_right_plus=150	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	178	.	NC_010473	562150	-1	NC_010473	562154	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__562153__-1__NC_010473__562154__1__3____200__200__1__0	max_left=74	max_left_minus=0	max_left_plus=74	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=145	max_right_minus=0	max_right_plus=145	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	179	.	NC_010473	563229	-1	NC_010473	563235	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__563229__-1__NC_010473__563235__1__0____200__200__1__0	max_left=168	max_left_minus=168	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=31	max_min_right_minus=31	max_min_right_plus=0	max_pos_hash_score=398	max_right=148	max_right_minus=148	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	180	.	NC_010473	565023	-1	NC_010473	565027	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__565023__-1__NC_010473__565027__1__0____200__200__1__0	max_left=130	max_left_minus=130	max_left_plus=56	max_min_left=56	max_min_left_minus=51	max_min_left_plus=56	max_min_right=82	max_min_right_minus=82	max_min_right_plus=0	max_pos_hash_score=398	max_right=199	max_right_minus=199	max_right_plus=142	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	181	.	NC_010473	566383	-1	NC_010473	566387	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__566383__-1__NC_010473__566387__1__0____200__200__1__0	max_left=155	max_left_minus=155	max_left_plus=147	max_min_left=86	max_min_left_minus=0	max_min_left_plus=86	max_min_right=50	max_min_right_minus=45	max_min_right_plus=50	max_pos_hash_score=398	max_right=192	max_right_minus=45	max_right_plus=192	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	182	.	NC_010473	566818	-1	NC_010473	566823	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__566819__-1__NC_010473__566823__1__1____200__200__1__0	max_left=182	max_left_minus=72	max_left_plus=182	max_min_left=80	max_min_left_minus=72	max_min_left_plus=80	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_pos_hash_score=396	max_right=188	max_right_minus=128	max_right_plus=188	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	183	.	NC_010473	569483	-1	NC_010473	569487	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__569486__-1__NC_010473__569487__1__3____200__200__1__0	max_left=85	max_left_minus=0	max_left_plus=85	max_min_left=85	max_min_left_minus=0	max_min_left_plus=85	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=148	max_right_minus=0	max_right_plus=148	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	184	.	NC_010473	569696	-1	NC_010473	569700	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__569698__-1__NC_010473__569700__1__2____200__200__1__0	max_left=147	max_left_minus=0	max_left_plus=147	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=51	max_min_right_minus=0	max_min_right_plus=51	max_pos_hash_score=394	max_right=184	max_right_minus=0	max_right_plus=184	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	185	.	NC_010473	572832	-1	NC_010473	572836	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__572835__-1__NC_010473__572836__1__3____200__200__1__0	max_left=164	max_left_minus=164	max_left_plus=134	max_min_left=37	max_min_left_minus=0	max_min_left_plus=37	max_min_right=79	max_min_right_minus=32	max_min_right_plus=79	max_pos_hash_score=392	max_right=160	max_right_minus=32	max_right_plus=160	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	186	.	NC_010473	573019	-1	NC_010473	573023	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__573020__-1__NC_010473__573023__1__1____200__200__1__0	max_left=193	max_left_minus=193	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=396	max_right=127	max_right_minus=127	max_right_plus=0	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=6
JC	187	.	NC_010473	573718	1	NC_010473	573714	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=194	key=NC_010473__573713__1__NC_010473__573714__-1__5____200__200__1__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=87	max_min_right_minus=0	max_min_right_plus=87	max_pos_hash_score=388	max_right=186	max_right_minus=0	max_right_plus=186	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.27	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=8	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=5	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	188	.	NC_010473	576132	-1	NC_010473	576137	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__576132__-1__NC_010473__576137__1__0____200__200__1__0	max_left=97	max_left_minus=97	max_left_plus=0	max_min_left=97	max_min_left_minus=97	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=172	max_right_minus=172	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	189	.	NC_010473	577615	1	NC_010473	577611	-1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=190	key=NC_010473__577606__1__NC_010473__577611__-1__9____200__200__1__0	max_left=173	max_left_minus=173	max_left_plus=173	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=38	max_min_right_minus=38	max_min_right_plus=17	max_pos_hash_score=380	max_right=156	max_right_minus=156	max_right_plus=17	neg_log10_pos_hash_p_value=4.4	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.000e+00	pos_hash_score=7	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=9	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=7
JC	190	.	NC_010473	577868	-1	NC_010473	577872	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=195	key=NC_010473__577872__-1__NC_010473__577872__1__4____200__200__1__0	max_left=177	max_left_minus=148	max_left_plus=177	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=19	max_pos_hash_score=390	max_right=55	max_right_minus=55	max_right_plus=19	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=4	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	191	.	NC_010473	584827	-1	NC_010473	584831	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__584830__-1__NC_010473__584831__1__3____200__200__1__0	max_left=120	max_left_minus=0	max_left_plus=120	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=392	max_right=170	max_right_minus=0	max_right_plus=170	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	192	.	NC_010473	588676	-1	NC_010473	588680	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__588678__-1__NC_010473__588680__1__2____200__200__1__0	max_left=125	max_left_minus=125	max_left_plus=0	max_min_left=47	max_min_left_minus=47	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=394	max_right=189	max_right_minus=189	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	193	.	NC_010473	588697	-1	NC_010473	588701	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__588699__-1__NC_010473__588701__1__2____200__200__1__0	max_left=165	max_left_minus=165	max_left_plus=25	max_min_left=77	max_min_left_minus=77	max_min_left_plus=25	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=394	max_right=172	max_right_minus=121	max_right_plus=172	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	194	.	NC_010473	591564	-1	NC_010473	591568	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__591566__-1__NC_010473__591568__1__2____200__200__1__0	max_left=187	max_left_minus=187	max_left_plus=112	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=92	max_min_right_minus=92	max_min_right_plus=84	max_pos_hash_score=394	max_right=135	max_right_minus=135	max_right_plus=84	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=7
JC	195	.	NC_010473	592031	-1	NC_010473	592035	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__592031__-1__NC_010473__592035__1__0____200__200__1__0	max_left=154	max_left_minus=54	max_left_plus=154	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=398	max_right=156	max_right_minus=156	max_right_plus=72	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	196	.	NC_010473	592345	-1	NC_010473	592349	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__592346__-1__NC_010473__592349__1__1____200__200__1__0	max_left=147	max_left_minus=68	max_left_plus=147	max_min_left=68	max_min_left_minus=68	max_min_left_plus=0	max_min_right=58	max_min_right_minus=0	max_min_right_plus=58	max_pos_hash_score=396	max_right=154	max_right_minus=154	max_right_plus=58	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	197	.	NC_010473	592759	-1	NC_010473	592763	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__592759__-1__NC_010473__592763__1__0____200__200__1__0	max_left=183	max_left_minus=0	max_left_plus=183	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=95	max_min_right_minus=0	max_min_right_plus=95	max_pos_hash_score=398	max_right=95	max_right_minus=0	max_right_plus=95	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	198	.	NC_010473	594900	-1	NC_010473	594904	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__594903__-1__NC_010473__594904__1__3____200__200__1__0	max_left=131	max_left_minus=0	max_left_plus=131	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=392	max_right=126	max_right_minus=0	max_right_plus=126	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.000e+00	pos_hash_score=6	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=7
JC	199	.	NC_010473	596373	-1	NC_010473	596377	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__596375__-1__NC_010473__596377__1__2____200__200__1__0	max_left=183	max_left_minus=183	max_left_plus=137	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=65	max_min_right_minus=19	max_min_right_plus=65	max_pos_hash_score=394	max_right=122	max_right_minus=122	max_right_plus=65	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	200	.	NC_010473	600224	-1	NC_010473	600228	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__600227__-1__NC_010473__600228__1__3____200__200__1__0	max_left=97	max_left_minus=0	max_left_plus=97	max_min_left=97	max_min_left_minus=0	max_min_left_plus=97	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=114	max_right_minus=0	max_right_plus=114	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	201	.	NC_010473	608383	-1	NC_010473	608387	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=10	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__608386__-1__NC_010473__608387__1__3____200__200__1__0	max_left=144	max_left_minus=0	max_left_plus=144	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=89	max_min_right_minus=0	max_min_right_plus=89	max_pos_hash_score=392	max_right=195	max_right_minus=0	max_right_plus=195	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	202	.	NC_010473	613127	-1	NC_010473	613131	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__613127__-1__NC_010473__613131__1__0____200__200__1__0	max_left=144	max_left_minus=144	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=0	max_pos_hash_score=398	max_right=99	max_right_minus=99	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	203	.	NC_010473	616807	-1	NC_010473	616811	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__616808__-1__NC_010473__616811__1__1____200__200__1__0	max_left=162	max_left_minus=0	max_left_plus=162	max_min_left=76	max_min_left_minus=0	max_min_left_plus=76	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=396	max_right=132	max_right_minus=0	max_right_plus=132	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e+00	pos_hash_score=4	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=4
JC	204	.	NC_010473	618021	-1	NC_010473	618025	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=196	key=NC_010473__618024__-1__NC_010473__618025__1__3____200__200__1__0	max_left=73	max_left_minus=0	max_left_plus=73	max_min_left=73	max_min_left_minus=0	max_min_left_plus=73	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=150	max_right_minus=0	max_right_plus=150	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	205	.	NC_010473	618469	-1	NC_010473	618473	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__618469__-1__NC_010473__618473__1__0____200__200__1__0	max_left=144	max_left_minus=144	max_left_plus=0	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=398	max_right=131	max_right_minus=131	max_right_plus=0	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	206	.	NC_010473	740721	-1	NC_010473	740725	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=3.858e-01	junction_possible_overlap_registers=198	key=NC_010473__740722__-1__NC_010473__740725__1__1____200__200__1__0	max_left=180	max_left_minus=180	max_left_plus=62	max_min_left=98	max_min_left_minus=98	max_min_left_plus=62	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=139	max_right_minus=118	max_right_plus=139	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=3.858e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.21	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=8	side_2_redundant=0	total_non_overlap_reads=5
JC	207	.	NC_010473	745304	-1	NC_010473	745314	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.277e-02	junction_possible_overlap_registers=196	key=NC_010473__745304__-1__NC_010473__745311__1__3____200__200__0__0	max_left=158	max_left_minus=158	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=39	max_min_right_minus=39	max_min_right_plus=0	max_pos_hash_score=392	max_right=172	max_right_minus=172	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.277e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	208	.	NC_010473	748866	1	NC_010473	748862	-1	0	alignment_overlap=4	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.293e-01	junction_possible_overlap_registers=195	key=NC_010473__748866__1__NC_010473__748866__-1__4____200__200__0__0	max_left=132	max_left_minus=132	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=390	max_right=159	max_right_minus=159	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.293e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=5
JC	209	.	NC_010473	753518	-1	NC_010473	753522	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.571e-02	junction_possible_overlap_registers=199	key=NC_010473__753518__-1__NC_010473__753522__1__0____200__200__0__0	max_left=131	max_left_minus=131	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=398	max_right=161	max_right_minus=161	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.571e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	210	.	NC_010473	757768	-1	NC_010473	757772	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=8.885e-02	junction_possible_overlap_registers=196	key=NC_010473__757768__-1__NC_010473__757769__1__3____200__200__0__0	max_left=116	max_left_minus=92	max_left_plus=116	max_min_left=92	max_min_left_minus=92	max_min_left_plus=78	max_min_right=81	max_min_right_minus=0	max_min_right_plus=81	max_pos_hash_score=392	max_right=120	max_right_minus=105	max_right_plus=120	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.885e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	211	.	NC_010473	767472	-1	NC_010473	767476	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.258e-02	junction_possible_overlap_registers=197	key=NC_010473__767472__-1__NC_010473__767474__1__2____200__200__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=89	max_min_left_minus=0	max_min_left_plus=89	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=394	max_right=137	max_right_minus=0	max_right_plus=137	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.258e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	212	.	NC_010473	784364	-1	NC_010473	784368	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.091e-02	junction_possible_overlap_registers=199	key=NC_010473__784364__-1__NC_010473__784368__1__0____200__200__0__0	max_left=123	max_left_minus=0	max_left_plus=123	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=398	max_right=162	max_right_minus=0	max_right_plus=162	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.091e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=3
JC	213	.	NC_010473	784368	1	NC_010473	786235	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.824e-02	junction_possible_overlap_registers=199	key=NC_010473__784368__1__NC_010473__786235__-1__0____200__200__0__0	max_left=162	max_left_minus=162	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=398	max_right=123	max_right_minus=123	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.824e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	214	.	NC_010473	801338	-1	NC_010473	801343	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.000e-02	junction_possible_overlap_registers=199	key=NC_010473__801338__-1__NC_010473__801343__1__0____200__200__0__0	max_left=195	max_left_minus=195	max_left_plus=0	max_min_left=87	max_min_left_minus=87	max_min_left_plus=0	max_min_right=42	max_min_right_minus=42	max_min_right_plus=0	max_pos_hash_score=398	max_right=113	max_right_minus=113	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.000e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	215	.	NC_010473	828506	-1	NC_010473	828510	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.490e-02	junction_possible_overlap_registers=197	key=NC_010473__828506__-1__NC_010473__828508__1__2____200__200__0__0	max_left=103	max_left_minus=0	max_left_plus=103	max_min_left=80	max_min_left_minus=0	max_min_left_plus=80	max_min_right=95	max_min_right_minus=0	max_min_right_plus=95	max_pos_hash_score=394	max_right=168	max_right_minus=0	max_right_plus=168	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.490e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	216	.	NC_010473	831997	-1	NC_010473	832001	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.154e-02	junction_possible_overlap_registers=196	key=NC_010473__831997__-1__NC_010473__831998__1__3____200__200__0__0	max_left=100	max_left_minus=73	max_left_plus=100	max_min_left=73	max_min_left_minus=73	max_min_left_plus=41	max_min_right=98	max_min_right_minus=0	max_min_right_plus=98	max_pos_hash_score=392	max_right=193	max_right_minus=123	max_right_plus=193	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.154e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4
JC	217	.	NC_010473	836859	-1	NC_010473	836863	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.104e-01	junction_possible_overlap_registers=197	key=NC_010473__836859__-1__NC_010473__836861__1__2____200__200__0__0	max_left=157	max_left_minus=0	max_left_plus=157	max_min_left=82	max_min_left_minus=0	max_min_left_plus=82	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=394	max_right=146	max_right_minus=0	max_right_plus=146	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.104e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=5
JC	218	.	NC_010473	841992	-1	NC_010473	841997	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__841992__-1__NC_010473__841997__1__0____200__200__1__1	max_left=178	max_left_minus=178	max_left_plus=45	max_min_left=77	max_min_left_minus=77	max_min_left_plus=45	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=398	max_right=155	max_right_minus=129	max_right_plus=155	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	219	.	NC_010473	842229	-1	NC_010473	842233	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__842229__-1__NC_010473__842233__1__0____200__200__1__1	max_left=182	max_left_minus=182	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=398	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	220	.	NC_010473	842505	-1	NC_010473	842509	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__842505__-1__NC_010473__842509__1__0____200__200__1__1	max_left=183	max_left_minus=183	max_left_plus=74	max_min_left=74	max_min_left_minus=59	max_min_left_plus=74	max_min_right=40	max_min_right_minus=40	max_min_right_plus=0	max_pos_hash_score=398	max_right=167	max_right_minus=167	max_right_plus=128	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	221	.	NC_010473	842583	-1	NC_010473	842587	1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=196	key=NC_010473__842583__-1__NC_010473__842584__1__3____200__200__1__1	max_left=90	max_left_minus=90	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=181	max_right_minus=181	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	222	.	NC_010473	843132	-1	NC_010473	843136	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.182e-01	junction_possible_overlap_registers=197	key=NC_010473__843132__-1__NC_010473__843134__1__2____200__200__0__0	max_left=122	max_left_minus=0	max_left_plus=122	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=93	max_min_right_minus=0	max_min_right_plus=93	max_pos_hash_score=394	max_right=112	max_right_minus=0	max_right_plus=112	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.182e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=3
JC	223	.	NC_010473	857859	-1	NC_010473	857863	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=1.904e-01	junction_possible_overlap_registers=196	key=NC_010473__857859__-1__NC_010473__857860__1__3____200__200__0__0	max_left=169	max_left_minus=0	max_left_plus=169	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=392	max_right=157	max_right_minus=0	max_right_plus=157	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.904e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=7
JC	224	.	NC_010473	896313	-1	NC_010473	896317	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.677e-01	junction_possible_overlap_registers=196	key=NC_010473__896313__-1__NC_010473__896314__1__3____200__200__0__0	max_left=186	max_left_minus=108	max_left_plus=186	max_min_left=72	max_min_left_minus=54	max_min_left_plus=72	max_min_right=90	max_min_right_minus=90	max_min_right_plus=79	max_pos_hash_score=392	max_right=147	max_right_minus=147	max_right_plus=124	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.677e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=6
JC	225	.	NC_010473	906490	-1	NC_010473	906494	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.736e-02	junction_possible_overlap_registers=197	key=NC_010473__906490__-1__NC_010473__906492__1__2____200__200__0__0	max_left=177	max_left_minus=59	max_left_plus=177	max_min_left=59	max_min_left_minus=59	max_min_left_plus=54	max_min_right=74	max_min_right_minus=0	max_min_right_plus=74	max_pos_hash_score=394	max_right=143	max_right_minus=141	max_right_plus=143	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.736e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=4
JC	226	.	NC_010473	915231	-1	NC_010473	915235	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.005e-01	junction_possible_overlap_registers=197	key=NC_010473__915231__-1__NC_010473__915233__1__2____200__200__0__0	max_left=186	max_left_minus=186	max_left_plus=0	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=394	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.005e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	227	.	NC_010473	950943	-1	NC_010473	950947	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.022e-01	junction_possible_overlap_registers=197	key=NC_010473__950943__-1__NC_010473__950945__1__2____200__200__0__0	max_left=155	max_left_minus=155	max_left_plus=42	max_min_left=42	max_min_left_minus=0	max_min_left_plus=42	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=394	max_right=157	max_right_minus=96	max_right_plus=157	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.022e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=3
JC	228	.	NC_010473	967722	-1	NC_010473	967726	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.256e-01	junction_possible_overlap_registers=197	key=NC_010473__967722__-1__NC_010473__967724__1__2____200__200__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=394	max_right=150	max_right_minus=0	max_right_plus=150	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.256e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=3
JC	229	.	NC_010473	979099	-1	NC_010473	979103	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.238e-02	junction_possible_overlap_registers=198	key=NC_010473__979099__-1__NC_010473__979102__1__1____200__200__0__0	max_left=110	max_left_minus=0	max_left_plus=110	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=90	max_min_right_minus=0	max_min_right_plus=90	max_pos_hash_score=396	max_right=122	max_right_minus=0	max_right_plus=122	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.238e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	230	.	NC_010473	1000503	-1	NC_010473	1000507	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.853e-02	junction_possible_overlap_registers=196	key=NC_010473__1000503__-1__NC_010473__1000504__1__3____200__200__0__0	max_left=154	max_left_minus=154	max_left_plus=72	max_min_left=72	max_min_left_minus=30	max_min_left_plus=72	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=392	max_right=167	max_right_minus=167	max_right_plus=125	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.853e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	231	.	NC_010473	1002324	-1	NC_010473	1002328	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.710e-02	junction_possible_overlap_registers=198	key=NC_010473__1002324__-1__NC_010473__1002327__1__1____200__200__0__0	max_left=193	max_left_minus=193	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=396	max_right=81	max_right_minus=81	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=7.710e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	232	.	NC_010473	1003612	-1	NC_010473	1003616	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.122e-02	junction_possible_overlap_registers=199	key=NC_010473__1003612__-1__NC_010473__1003616__1__0____200__200__0__0	max_left=154	max_left_minus=154	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=398	max_right=79	max_right_minus=79	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.122e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	233	.	NC_010473	1004339	-1	NC_010473	1004343	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.184e-01	junction_possible_overlap_registers=196	key=NC_010473__1004339__-1__NC_010473__1004340__1__3____200__200__0__0	max_left=147	max_left_minus=0	max_left_plus=147	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=392	max_right=108	max_right_minus=0	max_right_plus=108	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.184e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=6
JC	234	.	NC_010473	1027515	-1	NC_010473	1027519	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.470e-02	junction_possible_overlap_registers=198	key=NC_010473__1027515__-1__NC_010473__1027518__1__1____200__200__0__0	max_left=152	max_left_minus=152	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=396	max_right=78	max_right_minus=78	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.470e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	235	.	NC_010473	1057307	-1	NC_010473	1057312	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=2.463e-01	junction_possible_overlap_registers=196	key=NC_010473__1057307__-1__NC_010473__1057309__1__3____200__200__0__0	max_left=177	max_left_minus=177	max_left_plus=175	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=57	max_min_right_minus=20	max_min_right_plus=57	max_pos_hash_score=392	max_right=160	max_right_minus=20	max_right_plus=160	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=2.463e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=19	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=6
JC	236	.	NC_010473	1063846	-1	NC_010473	1063850	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.996e-02	junction_possible_overlap_registers=197	key=NC_010473__1063846__-1__NC_010473__1063848__1__2____200__200__0__0	max_left=156	max_left_minus=0	max_left_plus=156	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=394	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.996e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	237	.	NC_010473	1072141	-1	NC_010473	1072147	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.000e-01	junction_possible_overlap_registers=199	key=NC_010473__1072141__-1__NC_010473__1072147__1__0____200__200__0__0	max_left=105	max_left_minus=105	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=398	max_right=161	max_right_minus=161	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	238	.	NC_010473	1083587	-1	NC_010473	1083591	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.230e-01	junction_possible_overlap_registers=197	key=NC_010473__1083587__-1__NC_010473__1083589__1__2____200__200__0__0	max_left=141	max_left_minus=141	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=394	max_right=108	max_right_minus=108	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.230e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=3
JC	239	.	NC_010473	1105338	-1	NC_010473	1105342	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.333e-02	junction_possible_overlap_registers=199	key=NC_010473__1105338__-1__NC_010473__1105342__1__0____200__200__0__0	max_left=150	max_left_minus=150	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=398	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.333e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	240	.	NC_010473	1118030	1	NC_010473	3213256	-1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=12	flanking_left=200	flanking_right=200	frequency=5.962e-01	junction_possible_overlap_registers=198	key=NC_010473__1118030__1__NC_010473__3213257__-1__1____200__200__0__0	max_left=194	max_left_minus=194	max_left_plus=179	max_min_left=97	max_min_left_minus=97	max_min_left_plus=92	max_min_right=97	max_min_right_minus=81	max_min_right_plus=97	max_pos_hash_score=396	max_right=199	max_right_minus=199	max_right_plus=145	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.81	new_junction_read_count=31	polymorphism_frequency=5.962e-01	pos_hash_score=28	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=28
JC	241	.	NC_010473	1118039	-1	NC_010473	3211929	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=14	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__1118039__-1__NC_010473__3211928__1__1____200__200__0__1	max_left=196	max_left_minus=196	max_left_plus=195	max_min_left=99	max_min_left_minus=99	max_min_left_plus=74	max_min_right=93	max_min_right_minus=66	max_min_right_plus=93	max_pos_hash_score=396	max_right=185	max_right_minus=185	max_right_plus=181	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.81	new_junction_read_count=31	polymorphism_frequency=9.122e-01	pos_hash_score=29	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=29
JC	242	.	NC_010473	1145572	1	NC_010473	1145568	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=2.063e-01	junction_possible_overlap_registers=192	key=NC_010473__1145572__1__NC_010473__1145575__-1__7____200__200__0__0	max_left=177	max_left_minus=104	max_left_plus=177	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=90	max_min_right_minus=90	max_min_right_plus=47	max_pos_hash_score=384	max_right=136	max_right_minus=90	max_right_plus=136	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=2.063e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=23	side_2_redundant=0	total_non_overlap_reads=6
JC	243	.	NC_010473	1146826	-1	NC_010473	1146830	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__1146826__-1__NC_010473__1146829__1__1____200__200__0__1	max_left=169	max_left_minus=63	max_left_plus=169	max_min_left=63	max_min_left_minus=63	max_min_left_plus=58	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=396	max_right=184	max_right_minus=145	max_right_plus=184	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=1.000e+00	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	244	.	NC_010473	1190970	1	NC_010473	1190966	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.062e-01	junction_possible_overlap_registers=195	key=NC_010473__1190970__1__NC_010473__1190970__-1__4____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=0	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=0	max_pos_hash_score=390	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.062e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.67	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=3
JC	245	.	NC_010473	1204195	-1	NC_010473	1204199	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.571e-02	junction_possible_overlap_registers=199	key=NC_010473__1204195__-1__NC_010473__1204199__1__0____200__200__0__0	max_left=139	max_left_minus=0	max_left_plus=139	max_min_left=21	max_min_left_minus=0	max_min_left_plus=21	max_min_right=93	max_min_right_minus=0	max_min_right_plus=93	max_pos_hash_score=398	max_right=183	max_right_minus=0	max_right_plus=183	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.571e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	246	.	NC_010473	1209707	-1	NC_010473	1209711	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.013e-01	junction_possible_overlap_registers=199	key=NC_010473__1209707__-1__NC_010473__1209711__1__0____200__200__0__0	max_left=130	max_left_minus=0	max_left_plus=130	max_min_left=72	max_min_left_minus=0	max_min_left_plus=72	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=398	max_right=140	max_right_minus=0	max_right_plus=140	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.013e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	247	.	NC_010473	1212901	-1	NC_010473	1212905	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.931e-02	junction_possible_overlap_registers=197	key=NC_010473__1212901__-1__NC_010473__1212903__1__2____200__200__0__0	max_left=87	max_left_minus=87	max_left_plus=56	max_min_left=87	max_min_left_minus=87	max_min_left_plus=56	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=169	max_right_minus=110	max_right_plus=169	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.931e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	248	.	NC_010473	1232912	-1	NC_010473	1232916	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.005e-01	junction_possible_overlap_registers=197	key=NC_010473__1232912__-1__NC_010473__1232914__1__2____200__200__0__0	max_left=109	max_left_minus=0	max_left_plus=109	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=89	max_min_right_minus=0	max_min_right_plus=89	max_pos_hash_score=394	max_right=145	max_right_minus=0	max_right_plus=145	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.005e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	249	.	NC_010473	1245363	1	NC_010473	1245359	-1	0	alignment_overlap=6	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.192e-01	junction_possible_overlap_registers=193	key=NC_010473__1245363__1__NC_010473__1245365__-1__6____200__200__0__0	max_left=128	max_left_minus=128	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=386	max_right=184	max_right_minus=184	max_right_plus=0	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.192e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=4
JC	250	.	NC_010473	1250253	-1	NC_010473	1250257	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.375e-02	junction_possible_overlap_registers=199	key=NC_010473__1250253__-1__NC_010473__1250257__1__0____200__200__0__0	max_left=182	max_left_minus=0	max_left_plus=182	max_min_left=69	max_min_left_minus=0	max_min_left_plus=69	max_min_right=75	max_min_right_minus=0	max_min_right_plus=75	max_pos_hash_score=398	max_right=131	max_right_minus=0	max_right_plus=131	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.375e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=3
JC	251	.	NC_010473	1291402	-1	NC_010473	1291406	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.299e-01	junction_possible_overlap_registers=196	key=NC_010473__1291402__-1__NC_010473__1291403__1__3____200__200__0__0	max_left=146	max_left_minus=0	max_left_plus=146	max_min_left=47	max_min_left_minus=0	max_min_left_plus=47	max_min_right=71	max_min_right_minus=0	max_min_right_plus=71	max_pos_hash_score=392	max_right=185	max_right_minus=0	max_right_plus=185	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.299e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=4
JC	252	.	NC_010473	1346123	-1	NC_010473	1346128	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.613e-01	junction_possible_overlap_registers=199	key=NC_010473__1346123__-1__NC_010473__1346128__1__0____200__200__0__0	max_left=183	max_left_minus=183	max_left_plus=0	max_min_left=50	max_min_left_minus=50	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=0	max_pos_hash_score=398	max_right=155	max_right_minus=155	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.613e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=4
JC	253	.	NC_010473	1358318	1	NC_010473	1358314	-1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.261e-01	junction_possible_overlap_registers=195	key=NC_010473__1358318__1__NC_010473__1358318__-1__4____200__200__0__0	max_left=161	max_left_minus=161	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=35	max_min_right_minus=35	max_min_right_plus=0	max_pos_hash_score=390	max_right=141	max_right_minus=141	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.261e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=4
JC	254	.	NC_010473	1362109	-1	NC_010473	1362113	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.955e-02	junction_possible_overlap_registers=199	key=NC_010473__1362109__-1__NC_010473__1362113__1__0____200__200__0__0	max_left=180	max_left_minus=0	max_left_plus=180	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=398	max_right=85	max_right_minus=0	max_right_plus=85	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.955e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	255	.	NC_010473	1364832	-1	NC_010473	1364836	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.455e-01	junction_possible_overlap_registers=197	key=NC_010473__1364832__-1__NC_010473__1364834__1__2____200__200__0__0	max_left=172	max_left_minus=0	max_left_plus=172	max_min_left=44	max_min_left_minus=0	max_min_left_plus=44	max_min_right=52	max_min_right_minus=0	max_min_right_plus=52	max_pos_hash_score=394	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.455e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=4
JC	256	.	NC_010473	1380530	-1	NC_010473	4471165	-1	-78	alignment_overlap=-78	coverage_minus=7	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=5.825e-01	junction_possible_overlap_registers=121	key=NC_010473__1380530__-1__NC_010473__4471165__-1__-78__GGGGATCCGTCGACCTGCAGTTCGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGAAGCAGCTCCAGCCTACACA__200__200__0__0	max_left=122	max_left_minus=107	max_left_plus=122	max_min_left=57	max_min_left_minus=57	max_min_left_plus=37	max_min_right=44	max_min_right_minus=22	max_min_right_plus=44	max_pos_hash_score=242	max_right=114	max_right_minus=114	max_right_plus=84	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=14	polymorphism_frequency=5.825e-01	pos_hash_score=13	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=GGGGATCCGTCGACCTGCAGTTCGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGAAGCAGCTCCAGCCTACACA
JC	257	.	NC_010473	1386451	-1	NC_010473	1386455	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=4.054e-02	junction_possible_overlap_registers=199	key=NC_010473__1386451__-1__NC_010473__1386455__1__0____200__200__0__0	max_left=150	max_left_minus=150	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=398	max_right=182	max_right_minus=88	max_right_plus=182	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=4.054e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.85	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.85	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=71	side_2_redundant=0	total_non_overlap_reads=3
JC	258	.	NC_010473	1389189	-1	NC_010473	1389193	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=6.329e-02	junction_possible_overlap_registers=199	key=NC_010473__1389189__-1__NC_010473__1389193__1__0____200__200__0__0	max_left=166	max_left_minus=166	max_left_plus=80	max_min_left=92	max_min_left_minus=92	max_min_left_plus=80	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=398	max_right=146	max_right_minus=146	max_right_plus=120	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=6.329e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.90	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.96	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=5
JC	259	.	NC_010473	1390610	-1	NC_010473	1390614	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=11	flanking_left=200	flanking_right=200	frequency=1.308e-01	junction_possible_overlap_registers=197	key=NC_010473__1390610__-1__NC_010473__1390612__1__2____200__200__0__0	max_left=158	max_left_minus=0	max_left_plus=158	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=394	max_right=196	max_right_minus=0	max_right_plus=196	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=1.308e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.96	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.90	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=11
JC	260	.	NC_010473	1391132	1	NC_010473	1391126	-1	0	alignment_overlap=7	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=4.759e-02	junction_possible_overlap_registers=192	key=NC_010473__1391132__1__NC_010473__1391133__-1__7____200__200__0__0	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=66	max_min_right_minus=66	max_min_right_plus=0	max_pos_hash_score=384	max_right=122	max_right_minus=122	max_right_plus=0	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=4.759e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.14	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=82	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.19	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=4
JC	261	.	NC_010473	1394899	1	NC_010473	1394894	-1	0	alignment_overlap=5	coverage_minus=15	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.784e-01	junction_possible_overlap_registers=194	key=NC_010473__1394899__1__NC_010473__1394899__-1__5____200__200__0__0	max_left=190	max_left_minus=190	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=80	max_min_right_minus=80	max_min_right_plus=0	max_pos_hash_score=388	max_right=181	max_right_minus=181	max_right_plus=0	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.40	new_junction_read_count=15	polymorphism_frequency=1.784e-01	pos_hash_score=15	prediction=polymorphism	reject=FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.88	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.82	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=68	side_2_redundant=0	total_non_overlap_reads=15
JC	262	.	NC_010473	1396295	-1	NC_010473	1396299	1	0	alignment_overlap=3	coverage_minus=22	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.712e-01	junction_possible_overlap_registers=196	key=NC_010473__1396295__-1__NC_010473__1396296__1__3____200__200__0__0	max_left=176	max_left_minus=176	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=392	max_right=187	max_right_minus=187	max_right_plus=0	neg_log10_pos_hash_p_value=1.6	new_junction_coverage=0.64	new_junction_read_count=24	polymorphism_frequency=2.712e-01	pos_hash_score=19	prediction=polymorphism	reject=INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.72	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=66	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.70	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=22
JC	263	.	NC_010473	1396712	-1	NC_010473	1396716	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=5.551e-02	junction_possible_overlap_registers=197	key=NC_010473__1396712__-1__NC_010473__1396714__1__2____200__200__0__0	max_left=166	max_left_minus=0	max_left_plus=166	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=93	max_min_right_minus=0	max_min_right_plus=93	max_pos_hash_score=394	max_right=93	max_right_minus=0	max_right_plus=93	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=5.551e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.24	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.24	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5
JC	264	.	NC_010473	1408094	1	NC_010473	1408090	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.215e-02	junction_possible_overlap_registers=192	key=NC_010473__1408094__1__NC_010473__1408097__-1__7____200__200__0__0	max_left=91	max_left_minus=0	max_left_plus=91	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=384	max_right=171	max_right_minus=0	max_right_plus=171	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.215e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=4
JC	265	.	NC_010473	1411973	-1	NC_010473	1411977	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.889e-02	junction_possible_overlap_registers=199	key=NC_010473__1411973__-1__NC_010473__1411977__1__0____200__200__0__0	max_left=115	max_left_minus=115	max_left_plus=0	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=398	max_right=162	max_right_minus=162	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.889e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	266	.	NC_010473	1446686	-1	NC_010473	1446690	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.697e-02	junction_possible_overlap_registers=197	key=NC_010473__1446686__-1__NC_010473__1446688__1__2____200__200__0__0	max_left=107	max_left_minus=52	max_left_plus=107	max_min_left=52	max_min_left_minus=52	max_min_left_plus=10	max_min_right=91	max_min_right_minus=0	max_min_right_plus=91	max_pos_hash_score=394	max_right=189	max_right_minus=149	max_right_plus=189	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.697e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	267	.	NC_010473	1449352	-1	NC_010473	1449357	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.247e-02	junction_possible_overlap_registers=199	key=NC_010473__1449352__-1__NC_010473__1449357__1__0____200__200__0__0	max_left=121	max_left_minus=121	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=398	max_right=130	max_right_minus=130	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.247e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=4
JC	268	.	NC_010473	1455332	1	NC_010473	3365613	1	-15	alignment_overlap=-15	coverage_minus=17	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=4.560e-01	junction_possible_overlap_registers=184	key=NC_010473__1455332__1__NC_010473__3365613__1__-15__CGTTACTGGTTTCAT__200__200__0__0	max_left=168	max_left_minus=164	max_left_plus=168	max_min_left=76	max_min_left_minus=70	max_min_left_plus=76	max_min_right=78	max_min_right_minus=78	max_min_right_plus=30	max_pos_hash_score=368	max_right=184	max_right_minus=184	max_right_plus=150	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.87	new_junction_read_count=31	polymorphism_frequency=4.560e-01	pos_hash_score=23	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=26	unique_read_sequence=CGTTACTGGTTTCAT
JC	269	.	NC_010473	1476068	-1	NC_010473	1476072	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.692e-02	junction_possible_overlap_registers=199	key=NC_010473__1476068__-1__NC_010473__1476072__1__0____200__200__0__0	max_left=115	max_left_minus=0	max_left_plus=115	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=398	max_right=143	max_right_minus=0	max_right_plus=143	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.692e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	270	.	NC_010473	1483589	-1	NC_010473	1483593	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__1483589__-1__NC_010473__1483592__1__1____200__200__1__1	max_left=141	max_left_minus=141	max_left_plus=127	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=89	max_min_right_minus=89	max_min_right_plus=77	max_pos_hash_score=396	max_right=189	max_right_minus=189	max_right_plus=77	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.31	new_junction_read_count=12	polymorphism_frequency=NA	pos_hash_score=9	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	271	.	NC_010473	1483599	-1	NC_010473	1483603	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__1483599__-1__NC_010473__1483602__1__1____200__200__1__1	max_left=139	max_left_minus=139	max_left_plus=118	max_min_left=52	max_min_left_minus=0	max_min_left_plus=52	max_min_right=98	max_min_right_minus=62	max_min_right_plus=98	max_pos_hash_score=396	max_right=180	max_right_minus=62	max_right_plus=180	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	272	.	NC_010473	1521892	-1	NC_010473	1521896	1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=4.086e-01	junction_possible_overlap_registers=198	key=NC_010473__1521892__-1__NC_010473__1521895__1__1____200__200__0__1	max_left=143	max_left_minus=143	max_left_plus=0	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=396	max_right=189	max_right_minus=189	max_right_plus=0	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=4.086e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	273	.	NC_010473	1525775	-1	NC_010473	1525779	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.522e-01	junction_possible_overlap_registers=197	key=NC_010473__1525775__-1__NC_010473__1525777__1__2____200__200__0__0	max_left=125	max_left_minus=125	max_left_plus=12	max_min_left=64	max_min_left_minus=64	max_min_left_plus=12	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=394	max_right=181	max_right_minus=134	max_right_plus=181	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.522e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=5
JC	274	.	NC_010473	1569232	-1	NC_010473	1569236	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.435e-01	junction_possible_overlap_registers=197	key=NC_010473__1569232__-1__NC_010473__1569234__1__2____200__200__0__0	max_left=145	max_left_minus=113	max_left_plus=145	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=56	max_pos_hash_score=394	max_right=187	max_right_minus=187	max_right_plus=56	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.435e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=6
JC	275	.	NC_010473	1601758	-1	NC_010473	1601762	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.256e-01	junction_possible_overlap_registers=197	key=NC_010473__1601758__-1__NC_010473__1601760__1__2____200__200__0__0	max_left=150	max_left_minus=0	max_left_plus=150	max_min_left=72	max_min_left_minus=0	max_min_left_plus=72	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=394	max_right=145	max_right_minus=0	max_right_plus=145	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.256e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=5
JC	276	.	NC_010473	1605321	-1	NC_010473	1605325	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.895e-02	junction_possible_overlap_registers=199	key=NC_010473__1605321__-1__NC_010473__1605325__1__0____200__200__0__0	max_left=116	max_left_minus=0	max_left_plus=116	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=91	max_min_right_minus=0	max_min_right_plus=91	max_pos_hash_score=398	max_right=101	max_right_minus=0	max_right_plus=101	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.895e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	277	.	NC_010473	1621409	-1	NC_010473	1621413	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.963e-02	junction_possible_overlap_registers=195	key=NC_010473__1621409__-1__NC_010473__1621409__1__4____200__200__0__0	max_left=182	max_left_minus=182	max_left_plus=0	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=390	max_right=136	max_right_minus=136	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.963e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	278	.	NC_010473	1621409	1	NC_010473	3721116	-1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=6.514e-02	junction_possible_overlap_registers=195	key=NC_010473__1621409__1__NC_010473__3721120__-1__4____200__200__0__0	max_left=69	max_left_minus=0	max_left_plus=69	max_min_left=69	max_min_left_minus=0	max_min_left_plus=69	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.514e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	279	.	NC_010473	1631311	-1	NC_010473	1631315	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.369e-02	junction_possible_overlap_registers=196	key=NC_010473__1631311__-1__NC_010473__1631312__1__3____200__200__0__0	max_left=179	max_left_minus=0	max_left_plus=179	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_pos_hash_score=392	max_right=131	max_right_minus=0	max_right_plus=131	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.369e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	280	.	NC_010473	1632791	-1	NC_010473	1632795	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.470e-02	junction_possible_overlap_registers=198	key=NC_010473__1632791__-1__NC_010473__1632794__1__1____200__200__0__0	max_left=195	max_left_minus=0	max_left_plus=195	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=78	max_min_right_minus=0	max_min_right_plus=78	max_pos_hash_score=396	max_right=78	max_right_minus=0	max_right_plus=78	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.470e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	281	.	NC_010473	1632815	-1	NC_010473	1632819	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.116e-01	junction_possible_overlap_registers=197	key=NC_010473__1632815__-1__NC_010473__1632817__1__2____200__200__0__0	max_left=144	max_left_minus=109	max_left_plus=144	max_min_left=43	max_min_left_minus=0	max_min_left_plus=43	max_min_right=91	max_min_right_minus=91	max_min_right_plus=78	max_pos_hash_score=394	max_right=155	max_right_minus=91	max_right_plus=155	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.116e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=4
JC	282	.	NC_010473	1633920	-1	NC_010473	1633924	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.931e-02	junction_possible_overlap_registers=197	key=NC_010473__1633920__-1__NC_010473__1633922__1__2____200__200__0__0	max_left=171	max_left_minus=171	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=67	max_min_right_minus=67	max_min_right_plus=0	max_pos_hash_score=394	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.931e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	283	.	NC_010473	1659709	-1	NC_010473	1659714	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__1659710__-1__NC_010473__1659714__1__1____200__200__1__0	max_left=170	max_left_minus=170	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=0	max_pos_hash_score=396	max_right=76	max_right_minus=76	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.000e+00	pos_hash_score=3	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=3
JC	284	.	NC_010473	1681777	1	NC_010473	1681773	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.249e-01	junction_possible_overlap_registers=194	key=NC_010473__1681777__1__NC_010473__1681778__-1__5____200__200__0__0	max_left=159	max_left_minus=0	max_left_plus=159	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=388	max_right=99	max_right_minus=0	max_right_plus=99	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.249e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	285	.	NC_010473	1689477	1	NC_010473	1689473	-1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.075e-02	junction_possible_overlap_registers=195	key=NC_010473__1689477__1__NC_010473__1689477__-1__4____200__200__0__0	max_left=124	max_left_minus=52	max_left_plus=124	max_min_left=52	max_min_left_minus=52	max_min_left_plus=0	max_min_right=73	max_min_right_minus=0	max_min_right_plus=73	max_pos_hash_score=390	max_right=151	max_right_minus=151	max_right_plus=73	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.075e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	286	.	NC_010473	1706971	-1	NC_010473	1706975	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.059e-02	junction_possible_overlap_registers=199	key=NC_010473__1706971__-1__NC_010473__1706975__1__0____200__200__0__0	max_left=148	max_left_minus=102	max_left_plus=148	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=97	max_min_right_minus=97	max_min_right_plus=54	max_pos_hash_score=398	max_right=97	max_right_minus=97	max_right_plus=54	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.059e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	287	.	NC_010473	1707077	1	NC_010473	1707073	-1	0	alignment_overlap=5	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.411e-01	junction_possible_overlap_registers=194	key=NC_010473__1707077__1__NC_010473__1707078__-1__5____200__200__0__0	max_left=177	max_left_minus=177	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=388	max_right=191	max_right_minus=191	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.411e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=6
JC	288	.	NC_010473	1710453	-1	NC_010473	1710457	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.199e-01	junction_possible_overlap_registers=197	key=NC_010473__1710453__-1__NC_010473__1710455__1__2____200__200__0__0	max_left=183	max_left_minus=183	max_left_plus=0	max_min_left=36	max_min_left_minus=36	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=0	max_pos_hash_score=394	max_right=164	max_right_minus=164	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.199e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4
JC	289	.	NC_010473	1712112	-1	NC_010473	1712117	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.850e-02	junction_possible_overlap_registers=197	key=NC_010473__1712112__-1__NC_010473__1712115__1__2____200__200__0__0	max_left=90	max_left_minus=90	max_left_plus=77	max_min_left=90	max_min_left_minus=90	max_min_left_plus=77	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=184	max_right_minus=108	max_right_plus=184	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.850e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=3
JC	290	.	NC_010473	1714801	-1	NC_010473	1714805	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.360e-01	junction_possible_overlap_registers=196	key=NC_010473__1714801__-1__NC_010473__1714802__1__3____200__200__0__0	max_left=156	max_left_minus=126	max_left_plus=156	max_min_left=67	max_min_left_minus=0	max_min_left_plus=67	max_min_right=69	max_min_right_minus=69	max_min_right_plus=53	max_pos_hash_score=392	max_right=129	max_right_minus=69	max_right_plus=129	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.360e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	291	.	NC_010473	1718197	-1	NC_010473	1718201	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.087e-01	junction_possible_overlap_registers=199	key=NC_010473__1718197__-1__NC_010473__1718201__1__0____200__200__0__0	max_left=92	max_left_minus=81	max_left_plus=92	max_min_left=92	max_min_left_minus=81	max_min_left_plus=92	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=153	max_right_minus=153	max_right_plus=107	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.087e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=3
JC	292	.	NC_010473	1734329	-1	NC_010473	1734333	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.046e-01	junction_possible_overlap_registers=196	key=NC_010473__1734329__-1__NC_010473__1734330__1__3____200__200__0__0	max_left=139	max_left_minus=0	max_left_plus=139	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=69	max_min_right_minus=0	max_min_right_plus=69	max_pos_hash_score=392	max_right=139	max_right_minus=0	max_right_plus=139	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.046e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=4
JC	293	.	NC_010473	1738600	1	NC_010473	1740107	1	-1	alignment_overlap=-1	coverage_minus=11	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__1738600__1__NC_010473__1740107__1__-1__C__200__200__1__1	max_left=186	max_left_minus=186	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=0	max_pos_hash_score=396	max_right=175	max_right_minus=175	max_right_plus=0	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.29	new_junction_read_count=11	polymorphism_frequency=NA	pos_hash_score=10	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=11	unique_read_sequence=C
JC	294	.	NC_010473	1738690	-1	NC_010473	1738694	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=196	key=NC_010473__1738690__-1__NC_010473__1738691__1__3____200__200__1__1	max_left=131	max_left_minus=131	max_left_plus=0	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=392	max_right=188	max_right_minus=188	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=3	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	295	.	NC_010473	1776055	-1	NC_010473	1776059	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.002e-01	junction_possible_overlap_registers=198	key=NC_010473__1776055__-1__NC_010473__1776058__1__1____200__200__0__0	max_left=197	max_left_minus=197	max_left_plus=0	max_min_left=76	max_min_left_minus=76	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=396	max_right=121	max_right_minus=121	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.002e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	296	.	NC_010473	1778078	-1	NC_010473	1778082	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.950e-02	junction_possible_overlap_registers=196	key=NC_010473__1778078__-1__NC_010473__1778079__1__3____200__200__0__0	max_left=143	max_left_minus=0	max_left_plus=143	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=0	max_min_right_plus=96	max_pos_hash_score=392	max_right=96	max_right_minus=0	max_right_plus=96	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.950e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	297	.	NC_010473	1780680	1	NC_010473	1780675	-1	0	alignment_overlap=6	coverage_minus=2	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.558e-01	junction_possible_overlap_registers=193	key=NC_010473__1780680__1__NC_010473__1780681__-1__6____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=116	max_min_left=20	max_min_left_minus=0	max_min_left_plus=20	max_min_right=94	max_min_right_minus=93	max_min_right_plus=94	max_pos_hash_score=386	max_right=182	max_right_minus=93	max_right_plus=182	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.558e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=6
JC	298	.	NC_010473	1801329	-1	NC_010473	1801333	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=2.008e-01	junction_possible_overlap_registers=197	key=NC_010473__1801329__-1__NC_010473__1801331__1__2____200__200__0__0	max_left=153	max_left_minus=153	max_left_plus=142	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=55	max_pos_hash_score=394	max_right=138	max_right_minus=138	max_right_plus=55	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=2.008e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=7
JC	299	.	NC_010473	1821243	-1	NC_010473	1821249	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.776e-01	junction_possible_overlap_registers=196	key=NC_010473__1821243__-1__NC_010473__1821246__1__3____200__200__0__0	max_left=146	max_left_minus=0	max_left_plus=146	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=88	max_min_right_minus=0	max_min_right_plus=88	max_pos_hash_score=392	max_right=173	max_right_minus=0	max_right_plus=173	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.776e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=6
JC	300	.	NC_010473	1823174	1	NC_010473	3199469	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=12	flanking_left=200	flanking_right=200	frequency=6.061e-01	junction_possible_overlap_registers=199	key=NC_010473__1823174__1__NC_010473__3199469__1__0____200__200__0__0	max_left=199	max_left_minus=199	max_left_plus=185	max_min_left=88	max_min_left_minus=88	max_min_left_plus=88	max_min_right=94	max_min_right_minus=82	max_min_right_plus=94	max_pos_hash_score=398	max_right=188	max_right_minus=180	max_right_plus=188	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.78	new_junction_read_count=30	polymorphism_frequency=6.061e-01	pos_hash_score=27	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=27
JC	301	.	NC_010473	1823182	-1	NC_010473	3200797	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=17	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__1823182__-1__NC_010473__3200797__-1__0____200__200__0__1	max_left=186	max_left_minus=185	max_left_plus=186	max_min_left=98	max_min_left_minus=90	max_min_left_plus=98	max_min_right=96	max_min_right_minus=96	max_min_right_plus=51	max_pos_hash_score=398	max_right=186	max_right_minus=156	max_right_plus=186	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.84	new_junction_read_count=32	polymorphism_frequency=9.697e-01	pos_hash_score=28	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=31
JC	302	.	NC_010473	1828265	-1	NC_010473	1828269	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.324e-02	junction_possible_overlap_registers=198	key=NC_010473__1828265__-1__NC_010473__1828268__1__1____200__200__0__0	max_left=193	max_left_minus=193	max_left_plus=0	max_min_left=78	max_min_left_minus=78	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=0	max_pos_hash_score=396	max_right=144	max_right_minus=144	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.324e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=4
JC	303	.	NC_010473	1846899	-1	NC_010473	1846903	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.165e-01	junction_possible_overlap_registers=198	key=NC_010473__1846899__-1__NC_010473__1846902__1__1____200__200__0__0	max_left=193	max_left_minus=193	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=396	max_right=152	max_right_minus=152	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.165e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=5
JC	304	.	NC_010473	1855402	-1	NC_010473	1855406	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.396e-02	junction_possible_overlap_registers=198	key=NC_010473__1855402__-1__NC_010473__1855405__1__1____200__200__0__0	max_left=158	max_left_minus=158	max_left_plus=0	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=46	max_min_right_minus=46	max_min_right_plus=0	max_pos_hash_score=396	max_right=111	max_right_minus=111	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=3
JC	305	.	NC_010473	1880851	-1	NC_010473	1880855	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.509e-01	junction_possible_overlap_registers=197	key=NC_010473__1880851__-1__NC_010473__1880853__1__2____200__200__0__0	max_left=165	max_left_minus=165	max_left_plus=0	max_min_left=76	max_min_left_minus=76	max_min_left_plus=0	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=394	max_right=155	max_right_minus=155	max_right_plus=0	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=2.509e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=7
JC	306	.	NC_010473	1898088	-1	NC_010473	1898092	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.692e-02	junction_possible_overlap_registers=199	key=NC_010473__1898088__-1__NC_010473__1898092__1__0____200__200__0__0	max_left=150	max_left_minus=130	max_left_plus=150	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=86	max_min_right_minus=86	max_min_right_plus=52	max_pos_hash_score=398	max_right=86	max_right_minus=86	max_right_plus=52	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.692e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	307	.	NC_010473	1936316	-1	NC_010473	1936320	1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.360e-01	junction_possible_overlap_registers=196	key=NC_010473__1936316__-1__NC_010473__1936317__1__3____200__200__0__0	max_left=183	max_left_minus=183	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=58	max_min_right_minus=58	max_min_right_plus=0	max_pos_hash_score=392	max_right=162	max_right_minus=162	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.360e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	308	.	NC_010473	1949604	-1	NC_010473	1949608	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.716e-02	junction_possible_overlap_registers=198	key=NC_010473__1949604__-1__NC_010473__1949607__1__1____200__200__0__0	max_left=144	max_left_minus=144	max_left_plus=115	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=84	max_min_right_minus=57	max_min_right_plus=84	max_pos_hash_score=396	max_right=160	max_right_minus=57	max_right_plus=160	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.716e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=4
JC	309	.	NC_010473	1952409	1	NC_010473	1952405	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=2.273e-01	junction_possible_overlap_registers=194	key=NC_010473__1952409__1__NC_010473__1952410__-1__5____200__200__0__0	max_left=159	max_left_minus=0	max_left_plus=159	max_min_left=80	max_min_left_minus=0	max_min_left_plus=80	max_min_right=87	max_min_right_minus=0	max_min_right_plus=87	max_pos_hash_score=388	max_right=108	max_right_minus=0	max_right_plus=108	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=2.273e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=9
JC	310	.	NC_010473	1955807	-1	NC_010473	1955811	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.030e-01	junction_possible_overlap_registers=195	key=NC_010473__1955807__-1__NC_010473__1955807__1__4____200__200__0__0	max_left=110	max_left_minus=110	max_left_plus=4	max_min_left=42	max_min_left_minus=42	max_min_left_plus=4	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=390	max_right=193	max_right_minus=154	max_right_plus=193	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.030e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=4
JC	311	.	NC_010473	1981641	-1	NC_010473	1981645	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.148e-01	junction_possible_overlap_registers=197	key=NC_010473__1981641__-1__NC_010473__1981643__1__2____200__200__0__0	max_left=105	max_left_minus=105	max_left_plus=0	max_min_left=60	max_min_left_minus=60	max_min_left_plus=0	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=394	max_right=167	max_right_minus=167	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.148e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=4
JC	312	.	NC_010473	2038877	-1	NC_010473	2038881	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.481e-01	junction_possible_overlap_registers=199	key=NC_010473__2038877__-1__NC_010473__2038881__1__0____200__200__0__0	max_left=142	max_left_minus=0	max_left_plus=142	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=398	max_right=181	max_right_minus=0	max_right_plus=181	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.481e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=23	side_2_redundant=0	total_non_overlap_reads=4
JC	313	.	NC_010473	2051436	-1	NC_010473	2051440	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.927e-01	junction_possible_overlap_registers=198	key=NC_010473__2051436__-1__NC_010473__2051439__1__1____200__200__0__0	max_left=176	max_left_minus=75	max_left_plus=176	max_min_left=75	max_min_left_minus=75	max_min_left_plus=47	max_min_right=55	max_min_right_minus=0	max_min_right_plus=55	max_pos_hash_score=396	max_right=158	max_right_minus=126	max_right_plus=158	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.927e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=5
JC	314	.	NC_010473	2061199	1	NC_010473	2061195	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.464e-02	junction_possible_overlap_registers=195	key=NC_010473__2061199__1__NC_010473__2061199__-1__4____200__200__0__0	max_left=71	max_left_minus=71	max_left_plus=0	max_min_left=71	max_min_left_minus=71	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=146	max_right_minus=146	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.464e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=3
JC	315	.	NC_010473	2065806	1	NC_010473	2065802	-1	0	alignment_overlap=5	coverage_minus=10	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=3.253e-01	junction_possible_overlap_registers=194	key=NC_010473__2065806__1__NC_010473__2065807__-1__5____200__200__0__0	max_left=186	max_left_minus=186	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=91	max_min_right_minus=91	max_min_right_plus=0	max_pos_hash_score=388	max_right=179	max_right_minus=179	max_right_plus=0	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.27	new_junction_read_count=10	polymorphism_frequency=3.253e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.56	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=10
JC	316	.	NC_010473	2067182	-1	NC_010473	2067186	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=2.778e-01	junction_possible_overlap_registers=199	key=NC_010473__2067182__-1__NC_010473__2067186__1__0____200__200__0__1	max_left=172	max_left_minus=0	max_left_plus=172	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=398	max_right=199	max_right_minus=0	max_right_plus=199	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.26	new_junction_read_count=10	polymorphism_frequency=2.778e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	317	.	NC_010473	2068159	-1	NC_010473	2068163	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.611e-02	junction_possible_overlap_registers=198	key=NC_010473__2068160__-1__NC_010473__2068163__1__1____200__200__1__0	max_left=180	max_left_minus=180	max_left_plus=47	max_min_left=47	max_min_left_minus=0	max_min_left_plus=47	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=152	max_right_minus=52	max_right_plus=152	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.611e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	318	.	NC_010473	2071893	-1	NC_010473	2071897	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.716e-02	junction_possible_overlap_registers=198	key=NC_010473__2071893__-1__NC_010473__2071896__1__1____200__200__0__0	max_left=134	max_left_minus=134	max_left_plus=67	max_min_left=95	max_min_left_minus=95	max_min_left_plus=67	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=396	max_right=131	max_right_minus=121	max_right_plus=131	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=8.716e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.41	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.34	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=4
JC	319	.	NC_010473	2097351	-1	NC_010473	2097356	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.091e-02	junction_possible_overlap_registers=199	key=NC_010473__2097351__-1__NC_010473__2097356__1__0____200__200__0__0	max_left=143	max_left_minus=143	max_left_plus=75	max_min_left=75	max_min_left_minus=0	max_min_left_plus=75	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=398	max_right=128	max_right_minus=70	max_right_plus=128	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.091e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=3
JC	320	.	NC_010473	2099173	-1	NC_010473	2099177	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=2.514e-01	junction_possible_overlap_registers=196	key=NC_010473__2099173__-1__NC_010473__2099174__1__3____200__200__0__0	max_left=196	max_left_minus=0	max_left_plus=196	max_min_left=90	max_min_left_minus=0	max_min_left_plus=90	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=392	max_right=125	max_right_minus=0	max_right_plus=125	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=2.514e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=9
JC	321	.	NC_010473	2113078	1	NC_010473	2113074	-1	0	alignment_overlap=4	coverage_minus=10	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=2.619e-01	junction_possible_overlap_registers=195	key=NC_010473__2113078__1__NC_010473__2113078__-1__4____200__200__0__0	max_left=191	max_left_minus=191	max_left_plus=43	max_min_left=80	max_min_left_minus=80	max_min_left_plus=43	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=390	max_right=173	max_right_minus=173	max_right_plus=154	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.35	new_junction_read_count=13	polymorphism_frequency=2.619e-01	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=11
JC	322	.	NC_010473	2120731	-1	NC_010473	2120735	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.950e-02	junction_possible_overlap_registers=196	key=NC_010473__2120731__-1__NC_010473__2120732__1__3____200__200__0__0	max_left=147	max_left_minus=0	max_left_plus=147	max_min_left=57	max_min_left_minus=0	max_min_left_plus=57	max_min_right=50	max_min_right_minus=0	max_min_right_plus=50	max_pos_hash_score=392	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.950e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	323	.	NC_010473	2121470	-1	NC_010473	2121474	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.351e-02	junction_possible_overlap_registers=197	key=NC_010473__2121470__-1__NC_010473__2121472__1__2____200__200__0__0	max_left=89	max_left_minus=84	max_left_plus=89	max_min_left=89	max_min_left_minus=84	max_min_left_plus=89	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=172	max_right_minus=172	max_right_plus=110	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.351e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.00	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	324	.	NC_010473	2142900	-1	NC_010473	2142904	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.229e-02	junction_possible_overlap_registers=199	key=NC_010473__2142900__-1__NC_010473__2142904__1__0____200__200__0__0	max_left=173	max_left_minus=173	max_left_plus=151	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=53	max_min_right_minus=24	max_min_right_plus=53	max_pos_hash_score=398	max_right=53	max_right_minus=24	max_right_plus=53	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.229e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	325	.	NC_010473	2146237	-1	NC_010473	2146241	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.042e-01	junction_possible_overlap_registers=196	key=NC_010473__2146237__-1__NC_010473__2146238__1__3____200__200__0__0	max_left=105	max_left_minus=0	max_left_plus=105	max_min_left=83	max_min_left_minus=0	max_min_left_plus=83	max_min_right=92	max_min_right_minus=0	max_min_right_plus=92	max_pos_hash_score=392	max_right=136	max_right_minus=0	max_right_plus=136	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.042e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=3
JC	326	.	NC_010473	2155269	-1	NC_010473	2155273	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.562e-01	junction_possible_overlap_registers=199	key=NC_010473__2155269__-1__NC_010473__2155273__1__0____200__200__0__1	max_left=181	max_left_minus=0	max_left_plus=181	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_pos_hash_score=398	max_right=199	max_right_minus=0	max_right_plus=199	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.562e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	327	.	NC_010473	2156256	-1	NC_010473	2156260	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=2.509e-01	junction_possible_overlap_registers=198	key=NC_010473__2156257__-1__NC_010473__2156260__1__1____200__200__1__0	max_left=189	max_left_minus=0	max_left_plus=189	max_min_left=55	max_min_left_minus=0	max_min_left_plus=55	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=396	max_right=145	max_right_minus=0	max_right_plus=145	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=2.509e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=6
JC	328	.	NC_010473	2179458	1	NC_010473	2179454	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.011e-01	junction_possible_overlap_registers=194	key=NC_010473__2179458__1__NC_010473__2179459__-1__5____200__200__0__0	max_left=192	max_left_minus=192	max_left_plus=0	max_min_left=76	max_min_left_minus=76	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_pos_hash_score=388	max_right=125	max_right_minus=125	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.011e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=3
JC	329	.	NC_010473	2186301	-1	NC_010473	2186306	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=9.823e-02	junction_possible_overlap_registers=196	key=NC_010473__2186301__-1__NC_010473__2186303__1__3____200__200__0__0	max_left=132	max_left_minus=0	max_left_plus=132	max_min_left=82	max_min_left_minus=0	max_min_left_plus=82	max_min_right=93	max_min_right_minus=0	max_min_right_plus=93	max_pos_hash_score=392	max_right=172	max_right_minus=0	max_right_plus=172	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.823e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	330	.	NC_010473	2190538	1	NC_010473	2190534	-1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.498e-01	junction_possible_overlap_registers=194	key=NC_010473__2190538__1__NC_010473__2190539__-1__5____200__200__0__0	max_left=178	max_left_minus=178	max_left_plus=115	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=85	max_min_right_minus=57	max_min_right_plus=85	max_pos_hash_score=388	max_right=142	max_right_minus=142	max_right_plus=85	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.498e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=6
JC	331	.	NC_010473	2190859	-1	NC_010473	2190863	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=2.857e-01	junction_possible_overlap_registers=199	key=NC_010473__2190859__-1__NC_010473__2190863__1__0____200__200__0__1	max_left=187	max_left_minus=0	max_left_plus=187	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_pos_hash_score=398	max_right=199	max_right_minus=0	max_right_plus=199	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.26	new_junction_read_count=10	polymorphism_frequency=2.857e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	332	.	NC_010473	2215194	-1	NC_010473	2215198	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=4.333e-01	junction_possible_overlap_registers=199	key=NC_010473__2215194__-1__NC_010473__2215198__1__0____200__200__0__0	max_left=195	max_left_minus=195	max_left_plus=0	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=398	max_right=179	max_right_minus=179	max_right_plus=0	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.34	new_junction_read_count=13	polymorphism_frequency=4.333e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.44	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=12
JC	333	.	NC_010473	2224141	-1	NC_010473	2224145	1	0	alignment_overlap=3	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.988e-01	junction_possible_overlap_registers=196	key=NC_010473__2224141__-1__NC_010473__2224142__1__3____200__200__0__0	max_left=173	max_left_minus=173	max_left_plus=0	max_min_left=45	max_min_left_minus=45	max_min_left_plus=0	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=392	max_right=199	max_right_minus=199	max_right_plus=0	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.988e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=7
JC	334	.	NC_010473	2233356	-1	NC_010473	2233361	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.351e-01	junction_possible_overlap_registers=198	key=NC_010473__2233356__-1__NC_010473__2233360__1__1____200__200__0__0	max_left=171	max_left_minus=171	max_left_plus=85	max_min_left=85	max_min_left_minus=50	max_min_left_plus=85	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=396	max_right=151	max_right_minus=151	max_right_plus=115	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.351e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=6
JC	335	.	NC_010473	2287189	-1	NC_010473	2287193	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.033e-01	junction_possible_overlap_registers=196	key=NC_010473__2287189__-1__NC_010473__2287190__1__3____200__200__0__0	max_left=148	max_left_minus=148	max_left_plus=47	max_min_left=47	max_min_left_minus=32	max_min_left_plus=47	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=392	max_right=164	max_right_minus=164	max_right_plus=150	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.033e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	336	.	NC_010473	2295821	-1	NC_010473	2295826	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.333e-02	junction_possible_overlap_registers=199	key=NC_010473__2295821__-1__NC_010473__2295826__1__0____200__200__0__0	max_left=135	max_left_minus=135	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=398	max_right=139	max_right_minus=139	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.333e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	337	.	NC_010473	2304368	-1	NC_010473	2304374	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.127e-01	junction_possible_overlap_registers=199	key=NC_010473__2304368__-1__NC_010473__2304374__1__0____200__200__0__0	max_left=139	max_left_minus=0	max_left_plus=139	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=398	max_right=139	max_right_minus=0	max_right_plus=139	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.127e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	338	.	NC_010473	2308246	1	NC_010473	2308242	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.203e-02	junction_possible_overlap_registers=194	key=NC_010473__2308246__1__NC_010473__2308247__-1__5____200__200__0__0	max_left=83	max_left_minus=0	max_left_plus=83	max_min_left=83	max_min_left_minus=0	max_min_left_plus=83	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=388	max_right=180	max_right_minus=0	max_right_plus=180	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.203e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	339	.	NC_010473	2322770	-1	NC_010473	2322774	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.913e-02	junction_possible_overlap_registers=198	key=NC_010473__2322770__-1__NC_010473__2322773__1__1____200__200__0__0	max_left=148	max_left_minus=133	max_left_plus=148	max_min_left=46	max_min_left_minus=46	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=50	max_pos_hash_score=396	max_right=154	max_right_minus=154	max_right_plus=50	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.913e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	340	.	NC_010473	2332064	-1	NC_010473	2332068	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.411e-01	junction_possible_overlap_registers=198	key=NC_010473__2332064__-1__NC_010473__2332067__1__1____200__200__0__0	max_left=164	max_left_minus=164	max_left_plus=124	max_min_left=97	max_min_left_minus=97	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=75	max_pos_hash_score=396	max_right=147	max_right_minus=147	max_right_plus=75	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.411e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=5
JC	341	.	NC_010473	2340050	-1	NC_010473	2340054	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.538e-01	junction_possible_overlap_registers=199	key=NC_010473__2340050__-1__NC_010473__2340054__1__0____200__200__0__0	max_left=154	max_left_minus=154	max_left_plus=91	max_min_left=97	max_min_left_minus=97	max_min_left_plus=91	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=398	max_right=168	max_right_minus=168	max_right_plus=116	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.538e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=6
JC	342	.	NC_010473	2359255	-1	NC_010473	2359259	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.220e-01	junction_possible_overlap_registers=196	key=NC_010473__2359255__-1__NC_010473__2359256__1__3____200__200__0__0	max_left=112	max_left_minus=0	max_left_plus=112	max_min_left=80	max_min_left_minus=0	max_min_left_plus=80	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=392	max_right=177	max_right_minus=0	max_right_plus=177	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.220e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4
JC	343	.	NC_010473	2378007	-1	NC_010473	2378011	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=2.424e-01	junction_possible_overlap_registers=199	key=NC_010473__2378007__-1__NC_010473__2378011__1__0____200__200__0__1	max_left=79	max_left_minus=0	max_left_plus=79	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=199	max_right_minus=0	max_right_plus=199	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=2.424e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	344	.	NC_010473	2411253	-1	NC_010473	2411257	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=9.368e-02	junction_possible_overlap_registers=196	key=NC_010473__2411253__-1__NC_010473__2411254__1__3____200__200__0__0	max_left=154	max_left_minus=154	max_left_plus=117	max_min_left=79	max_min_left_minus=0	max_min_left_plus=79	max_min_right=98	max_min_right_minus=46	max_min_right_plus=98	max_pos_hash_score=392	max_right=118	max_right_minus=46	max_right_plus=118	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.368e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=4
JC	345	.	NC_010473	2459096	-1	NC_010473	2459100	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.202e-01	junction_possible_overlap_registers=196	key=NC_010473__2459096__-1__NC_010473__2459097__1__3____200__200__0__0	max_left=152	max_left_minus=152	max_left_plus=0	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=392	max_right=145	max_right_minus=145	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.202e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4
JC	346	.	NC_010473	2468838	-1	NC_010473	2468842	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.829e-02	junction_possible_overlap_registers=197	key=NC_010473__2468838__-1__NC_010473__2468840__1__2____200__200__0__0	max_left=144	max_left_minus=0	max_left_plus=144	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=394	max_right=148	max_right_minus=0	max_right_plus=148	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.829e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	347	.	NC_010473	2471208	-1	NC_010473	2471212	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=6.383e-02	junction_possible_overlap_registers=199	key=NC_010473__2471208__-1__NC_010473__2471212__1__0____200__200__0__0	max_left=123	max_left_minus=123	max_left_plus=112	max_min_left=67	max_min_left_minus=0	max_min_left_plus=67	max_min_right=87	max_min_right_minus=78	max_min_right_plus=87	max_pos_hash_score=398	max_right=133	max_right_minus=78	max_right_plus=133	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.383e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=3
JC	348	.	NC_010473	2502415	1	NC_010473	2502411	-1	0	alignment_overlap=5	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.971e-01	junction_possible_overlap_registers=194	key=NC_010473__2502415__1__NC_010473__2502416__-1__5____200__200__0__0	max_left=192	max_left_minus=192	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=70	max_min_right_minus=70	max_min_right_plus=0	max_pos_hash_score=388	max_right=178	max_right_minus=178	max_right_plus=0	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.971e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=8
JC	349	.	NC_010473	2521756	-1	NC_010473	2521760	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.470e-02	junction_possible_overlap_registers=198	key=NC_010473__2521756__-1__NC_010473__2521759__1__1____200__200__0__0	max_left=162	max_left_minus=162	max_left_plus=0	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=59	max_min_right_minus=59	max_min_right_plus=0	max_pos_hash_score=396	max_right=107	max_right_minus=107	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.470e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	350	.	NC_010473	2528277	1	NC_010473	2528273	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.588e-02	junction_possible_overlap_registers=194	key=NC_010473__2528277__1__NC_010473__2528278__-1__5____200__200__0__0	max_left=140	max_left_minus=0	max_left_plus=140	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=388	max_right=72	max_right_minus=0	max_right_plus=72	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.588e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	351	.	NC_010473	2548079	-1	NC_010473	2548083	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.138e-02	junction_possible_overlap_registers=196	key=NC_010473__2548079__-1__NC_010473__2548080__1__3____200__200__0__0	max_left=118	max_left_minus=0	max_left_plus=118	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=79	max_min_right_minus=0	max_min_right_plus=79	max_pos_hash_score=392	max_right=142	max_right_minus=0	max_right_plus=142	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.138e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=4
JC	352	.	NC_010473	2572173	-1	NC_010473	2572177	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.625e-01	junction_possible_overlap_registers=198	key=NC_010473__2572173__-1__NC_010473__2572176__1__1____200__200__0__0	max_left=141	max_left_minus=141	max_left_plus=38	max_min_left=61	max_min_left_minus=61	max_min_left_plus=38	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=396	max_right=182	max_right_minus=182	max_right_plus=160	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.625e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=6
JC	353	.	NC_010473	2580870	-1	NC_010473	2580874	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.220e-01	junction_possible_overlap_registers=196	key=NC_010473__2580870__-1__NC_010473__2580871__1__3____200__200__0__0	max_left=127	max_left_minus=127	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=392	max_right=177	max_right_minus=177	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.220e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4
JC	354	.	NC_010473	2595808	-1	NC_010473	2595812	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.000e-01	junction_possible_overlap_registers=199	key=NC_010473__2595808__-1__NC_010473__2595812__1__0____200__200__0__0	max_left=125	max_left_minus=0	max_left_plus=125	max_min_left=54	max_min_left_minus=0	max_min_left_plus=54	max_min_right=94	max_min_right_minus=0	max_min_right_plus=94	max_pos_hash_score=398	max_right=188	max_right_minus=0	max_right_plus=188	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.000e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	355	.	NC_010473	2645350	-1	NC_010473	2645354	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.058e-02	junction_possible_overlap_registers=196	key=NC_010473__2645350__-1__NC_010473__2645351__1__3____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=41	max_min_left=41	max_min_left_minus=30	max_min_left_plus=41	max_min_right=49	max_min_right_minus=49	max_min_right_plus=0	max_pos_hash_score=392	max_right=161	max_right_minus=161	max_right_plus=156	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.058e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	356	.	NC_010473	2647021	-1	NC_010473	2647025	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=6.977e-02	junction_possible_overlap_registers=199	key=NC_010473__2647021__-1__NC_010473__2647025__1__0____200__200__0__0	max_left=137	max_left_minus=66	max_left_plus=137	max_min_left=66	max_min_left_minus=66	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=398	max_right=148	max_right_minus=148	max_right_plus=64	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.977e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	357	.	NC_010473	2653032	-1	NC_010473	2653037	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.746e-02	junction_possible_overlap_registers=196	key=NC_010473__2653032__-1__NC_010473__2653034__1__3____200__200__0__0	max_left=182	max_left_minus=0	max_left_plus=182	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=68	max_min_right_minus=0	max_min_right_plus=68	max_pos_hash_score=392	max_right=120	max_right_minus=0	max_right_plus=120	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.746e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	358	.	NC_010473	2654581	-1	NC_010473	2654585	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.989e-02	junction_possible_overlap_registers=199	key=NC_010473__2654581__-1__NC_010473__2654585__1__0____200__200__0__0	max_left=142	max_left_minus=142	max_left_plus=110	max_min_left=42	max_min_left_minus=42	max_min_left_plus=0	max_min_right=91	max_min_right_minus=68	max_min_right_plus=91	max_pos_hash_score=398	max_right=157	max_right_minus=157	max_right_plus=91	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.989e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	359	.	NC_010473	2657239	-1	NC_010473	2657243	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.950e-02	junction_possible_overlap_registers=196	key=NC_010473__2657239__-1__NC_010473__2657240__1__3____200__200__0__0	max_left=167	max_left_minus=167	max_left_plus=0	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=37	max_min_right_minus=37	max_min_right_plus=0	max_pos_hash_score=392	max_right=109	max_right_minus=109	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.950e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	360	.	NC_010473	2662379	-1	NC_010473	2662383	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.053e-01	junction_possible_overlap_registers=199	key=NC_010473__2662379__-1__NC_010473__2662383__1__0____200__200__0__0	max_left=69	max_left_minus=69	max_left_plus=0	max_min_left=69	max_min_left_minus=69	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=180	max_right_minus=180	max_right_plus=0	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.053e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=5
JC	361	.	NC_010473	2672063	-1	NC_010473	2672067	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.165e-01	junction_possible_overlap_registers=197	key=NC_010473__2672063__-1__NC_010473__2672065__1__2____200__200__0__0	max_left=191	max_left_minus=0	max_left_plus=191	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=7	max_min_right_minus=0	max_min_right_plus=7	max_pos_hash_score=394	max_right=181	max_right_minus=0	max_right_plus=181	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.165e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=4
JC	362	.	NC_010473	2694993	-1	NC_010473	2694997	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.824e-02	junction_possible_overlap_registers=199	key=NC_010473__2694993__-1__NC_010473__2694997__1__0____200__200__0__0	max_left=119	max_left_minus=0	max_left_plus=119	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=398	max_right=186	max_right_minus=0	max_right_plus=186	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.824e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	363	.	NC_010473	2750228	1	NC_010473	2750224	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.124e-01	junction_possible_overlap_registers=194	key=NC_010473__2750228__1__NC_010473__2750229__-1__5____200__200__0__0	max_left=99	max_left_minus=99	max_left_plus=0	max_min_left=54	max_min_left_minus=54	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=388	max_right=176	max_right_minus=176	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.124e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=3
JC	364	.	NC_010473	2767631	-1	NC_010473	2767635	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.039e-02	junction_possible_overlap_registers=197	key=NC_010473__2767631__-1__NC_010473__2767633__1__2____200__200__0__0	max_left=185	max_left_minus=185	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=40	max_min_right_minus=40	max_min_right_plus=0	max_pos_hash_score=394	max_right=133	max_right_minus=133	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.039e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	365	.	NC_010473	2788602	-1	NC_010473	2788606	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.398e-01	junction_possible_overlap_registers=196	key=NC_010473__2788602__-1__NC_010473__2788603__1__3____200__200__0__0	max_left=167	max_left_minus=144	max_left_plus=167	max_min_left=96	max_min_left_minus=96	max_min_left_plus=68	max_min_right=49	max_min_right_minus=49	max_min_right_plus=30	max_pos_hash_score=392	max_right=156	max_right_minus=101	max_right_plus=156	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.398e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=5
JC	366	.	NC_010473	2789382	-1	NC_010473	2789386	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.119e-01	junction_possible_overlap_registers=196	key=NC_010473__2789382__-1__NC_010473__2789383__1__3____200__200__0__0	max_left=138	max_left_minus=0	max_left_plus=138	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=59	max_min_right_minus=0	max_min_right_plus=59	max_pos_hash_score=392	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.119e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=4
JC	367	.	NC_010473	2798094	-1	NC_010473	2798098	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.154e-01	junction_possible_overlap_registers=199	key=NC_010473__2798094__-1__NC_010473__2798098__1__0____200__200__0__0	max_left=158	max_left_minus=0	max_left_plus=158	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=42	max_min_right_minus=0	max_min_right_plus=42	max_pos_hash_score=398	max_right=144	max_right_minus=0	max_right_plus=144	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.154e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=23	side_2_redundant=0	total_non_overlap_reads=3
JC	368	.	NC_010473	2806541	-1	NC_010473	2807231	1	-71	alignment_overlap=-71	coverage_minus=5	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=128	key=NC_010473__2806541__-1__NC_010473__2807231__1__-71__GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGCATGCACGCAGCATATGC__200__200__0__0	max_left=124	max_left_minus=113	max_left_plus=124	max_min_left=56	max_min_left_minus=47	max_min_left_plus=56	max_min_right=42	max_min_right_minus=39	max_min_right_plus=42	max_pos_hash_score=256	max_right=119	max_right_minus=102	max_right_plus=119	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.61	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13	unique_read_sequence=GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACTTCGCATGCACGCAGCATATGC
JC	369	.	NC_010473	2816525	-1	NC_010473	2816529	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=198	key=NC_010473__2816525__-1__NC_010473__2816528__1__1____200__200__1__1	max_left=104	max_left_minus=9	max_left_plus=104	max_min_left=57	max_min_left_minus=9	max_min_left_plus=57	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=396	max_right=193	max_right_minus=193	max_right_plus=142	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	370	.	NC_010473	2817314	-1	NC_010473	2817318	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__2817314__-1__NC_010473__2817318__1__0____200__200__1__1	max_left=100	max_left_minus=100	max_left_plus=41	max_min_left=100	max_min_left_minus=100	max_min_left_plus=41	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=199	max_right_minus=199	max_right_plus=161	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	371	.	NC_010473	2820483	-1	NC_010473	2820488	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__2820483__-1__NC_010473__2820488__1__0____200__200__1__1	max_left=199	max_left_minus=168	max_left_plus=199	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=65	max_min_right_minus=33	max_min_right_plus=65	max_pos_hash_score=398	max_right=143	max_right_minus=143	max_right_plus=65	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=6	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	372	.	NC_010473	2837194	1	NC_010473	2837190	-1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.124e-01	junction_possible_overlap_registers=194	key=NC_010473__2837194__1__NC_010473__2837195__-1__5____200__200__0__0	max_left=150	max_left_minus=150	max_left_plus=0	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=0	max_pos_hash_score=388	max_right=149	max_right_minus=149	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.124e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=4
JC	373	.	NC_010473	2855578	-1	NC_010473	2855582	1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.967e-01	junction_possible_overlap_registers=195	key=NC_010473__2855578__-1__NC_010473__2855578__1__4____200__200__0__0	max_left=185	max_left_minus=168	max_left_plus=185	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=9	max_pos_hash_score=390	max_right=164	max_right_minus=164	max_right_plus=9	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.967e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=8
JC	374	.	NC_010473	2858352	1	NC_010473	2858348	-1	0	alignment_overlap=7	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.627e-02	junction_possible_overlap_registers=192	key=NC_010473__2858352__1__NC_010473__2858355__-1__7____200__200__0__0	max_left=150	max_left_minus=150	max_left_plus=0	max_min_left=26	max_min_left_minus=26	max_min_left_plus=0	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=384	max_right=167	max_right_minus=167	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.627e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	375	.	NC_010473	2860128	-1	NC_010473	2860133	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.282e-01	junction_possible_overlap_registers=199	key=NC_010473__2860128__-1__NC_010473__2860133__1__0____200__200__0__0	max_left=111	max_left_minus=111	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=398	max_right=142	max_right_minus=142	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.282e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=4
JC	376	.	NC_010473	2861461	-1	NC_010473	2861465	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=2.071e-01	junction_possible_overlap_registers=196	key=NC_010473__2861461__-1__NC_010473__2861462__1__3____200__200__0__0	max_left=117	max_left_minus=117	max_left_plus=116	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=82	max_min_right_minus=80	max_min_right_plus=82	max_pos_hash_score=392	max_right=195	max_right_minus=195	max_right_plus=82	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=2.071e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=5
JC	377	.	NC_010473	2862751	-1	NC_010473	2862755	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.696e-02	junction_possible_overlap_registers=199	key=NC_010473__2862751__-1__NC_010473__2862755__1__0____200__200__0__0	max_left=195	max_left_minus=195	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=398	max_right=135	max_right_minus=135	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.696e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	378	.	NC_010473	2893131	-1	NC_010473	2893135	1	0	alignment_overlap=4	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.216e-01	junction_possible_overlap_registers=195	key=NC_010473__2893131__-1__NC_010473__2893131__1__4____200__200__0__0	max_left=188	max_left_minus=188	max_left_plus=0	max_min_left=81	max_min_left_minus=81	max_min_left_plus=0	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=390	max_right=138	max_right_minus=138	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.216e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=5
JC	379	.	NC_010473	2920256	-1	NC_010473	2920260	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.229e-02	junction_possible_overlap_registers=199	key=NC_010473__2920256__-1__NC_010473__2920260__1__0____200__200__0__0	max_left=133	max_left_minus=98	max_left_plus=133	max_min_left=98	max_min_left_minus=98	max_min_left_plus=42	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=398	max_right=158	max_right_minus=104	max_right_plus=158	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.229e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=3
JC	380	.	NC_010473	2929706	-1	NC_010473	2929710	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.167e-01	junction_possible_overlap_registers=196	key=NC_010473__2929706__-1__NC_010473__2929707__1__3____200__200__0__0	max_left=162	max_left_minus=132	max_left_plus=162	max_min_left=68	max_min_left_minus=0	max_min_left_plus=68	max_min_right=77	max_min_right_minus=65	max_min_right_plus=77	max_pos_hash_score=392	max_right=129	max_right_minus=65	max_right_plus=129	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.167e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.79	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=4
JC	381	.	NC_010473	2949228	-1	NC_010473	2949232	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.148e-01	junction_possible_overlap_registers=197	key=NC_010473__2949228__-1__NC_010473__2949230__1__2____200__200__0__0	max_left=163	max_left_minus=0	max_left_plus=163	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=100	max_min_right_minus=0	max_min_right_plus=100	max_pos_hash_score=394	max_right=179	max_right_minus=0	max_right_plus=179	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.148e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=4
JC	382	.	NC_010473	2950440	-1	NC_010473	2950444	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.877e-02	junction_possible_overlap_registers=199	key=NC_010473__2950440__-1__NC_010473__2950444__1__0____200__200__0__0	max_left=138	max_left_minus=138	max_left_plus=0	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=63	max_min_right_minus=63	max_min_right_plus=0	max_pos_hash_score=398	max_right=128	max_right_minus=128	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.877e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	383	.	NC_010473	2972295	-1	NC_010473	2972299	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.258e-02	junction_possible_overlap_registers=197	key=NC_010473__2972295__-1__NC_010473__2972297__1__2____200__200__0__0	max_left=149	max_left_minus=149	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=394	max_right=79	max_right_minus=79	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.258e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	384	.	NC_010473	2976849	-1	NC_010473	2976853	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.010e-02	junction_possible_overlap_registers=197	key=NC_010473__2976849__-1__NC_010473__2976851__1__2____200__200__0__0	max_left=135	max_left_minus=135	max_left_plus=0	max_min_left=57	max_min_left_minus=57	max_min_left_plus=0	max_min_right=80	max_min_right_minus=80	max_min_right_plus=0	max_pos_hash_score=394	max_right=142	max_right_minus=142	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.010e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	385	.	NC_010473	2986954	-1	NC_010473	2986958	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.976e-01	junction_possible_overlap_registers=198	key=NC_010473__2986954__-1__NC_010473__2986957__1__1____200__200__0__0	max_left=192	max_left_minus=192	max_left_plus=157	max_min_left=83	max_min_left_minus=7	max_min_left_plus=83	max_min_right=77	max_min_right_minus=55	max_min_right_plus=77	max_pos_hash_score=396	max_right=192	max_right_minus=192	max_right_plus=102	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.976e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=7
JC	386	.	NC_010473	2990865	-1	NC_010473	2990871	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.441e-01	junction_possible_overlap_registers=195	key=NC_010473__2990865__-1__NC_010473__2990867__1__4____200__200__0__0	max_left=122	max_left_minus=0	max_left_plus=122	max_min_left=89	max_min_left_minus=0	max_min_left_plus=89	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=390	max_right=185	max_right_minus=0	max_right_plus=185	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.441e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=5
JC	387	.	NC_010473	2991127	1	NC_010473	2991123	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=1.938e-01	junction_possible_overlap_registers=194	key=NC_010473__2991127__1__NC_010473__2991128__-1__5____200__200__0__0	max_left=86	max_left_minus=0	max_left_plus=86	max_min_left=86	max_min_left_minus=0	max_min_left_plus=86	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=388	max_right=183	max_right_minus=0	max_right_plus=183	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.938e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=7
JC	388	.	NC_010473	3003123	-1	NC_010473	3003127	1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.126e-02	junction_possible_overlap_registers=195	key=NC_010473__3003123__-1__NC_010473__3003123__1__4____200__200__0__0	max_left=130	max_left_minus=88	max_left_plus=130	max_min_left=88	max_min_left_minus=88	max_min_left_plus=0	max_min_right=66	max_min_right_minus=0	max_min_right_plus=66	max_pos_hash_score=390	max_right=141	max_right_minus=141	max_right_plus=66	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.126e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	389	.	NC_010473	3009502	-1	NC_010473	3009506	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.136e-01	junction_possible_overlap_registers=199	key=NC_010473__3009502__-1__NC_010473__3009506__1__0____200__200__0__0	max_left=157	max_left_minus=157	max_left_plus=0	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=0	max_pos_hash_score=398	max_right=174	max_right_minus=174	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.136e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=5
JC	390	.	NC_010473	3011606	-1	NC_010473	3011610	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.791e-02	junction_possible_overlap_registers=199	key=NC_010473__3011606__-1__NC_010473__3011610__1__0____200__200__0__0	max_left=116	max_left_minus=116	max_left_plus=0	max_min_left=65	max_min_left_minus=65	max_min_left_plus=0	max_min_right=91	max_min_right_minus=91	max_min_right_plus=0	max_pos_hash_score=398	max_right=142	max_right_minus=142	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.791e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=4
JC	391	.	NC_010473	3013450	1	NC_010473	3013446	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.981e-02	junction_possible_overlap_registers=192	key=NC_010473__3013450__1__NC_010473__3013453__-1__7____200__200__0__0	max_left=179	max_left_minus=95	max_left_plus=179	max_min_left=95	max_min_left_minus=95	max_min_left_plus=34	max_min_right=13	max_min_right_minus=0	max_min_right_plus=13	max_pos_hash_score=384	max_right=159	max_right_minus=99	max_right_plus=159	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=7.981e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.19	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=3
JC	392	.	NC_010473	3014824	1	NC_010473	3014820	-1	0	alignment_overlap=4	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=6.182e-02	junction_possible_overlap_registers=195	key=NC_010473__3014824__1__NC_010473__3014824__-1__4____200__200__0__0	max_left=147	max_left_minus=147	max_left_plus=86	max_min_left=86	max_min_left_minus=83	max_min_left_plus=86	max_min_right=48	max_min_right_minus=48	max_min_right_plus=0	max_pos_hash_score=390	max_right=113	max_right_minus=113	max_right_plus=110	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.182e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	393	.	NC_010473	3016601	-1	NC_010473	3016605	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.620e-01	junction_possible_overlap_registers=198	key=NC_010473__3016601__-1__NC_010473__3016604__1__1____200__200__0__0	max_left=158	max_left_minus=158	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=57	max_min_right_minus=57	max_min_right_plus=0	max_pos_hash_score=396	max_right=150	max_right_minus=150	max_right_plus=0	neg_log10_pos_hash_p_value=4.2	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=1.620e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=8
JC	394	.	NC_010473	3043616	-1	NC_010473	3043620	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.034e-01	junction_possible_overlap_registers=199	key=NC_010473__3043616__-1__NC_010473__3043620__1__0____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=0	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=398	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.034e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=3
JC	395	.	NC_010473	3068199	1	NC_010473	3068195	-1	0	alignment_overlap=5	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.758e-01	junction_possible_overlap_registers=194	key=NC_010473__3068199__1__NC_010473__3068200__-1__5____200__200__0__0	max_left=158	max_left_minus=158	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=388	max_right=180	max_right_minus=180	max_right_plus=0	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.27	new_junction_read_count=10	polymorphism_frequency=1.758e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.26	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=7
JC	396	.	NC_010473	3071621	-1	NC_010473	3071626	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=9.259e-02	junction_possible_overlap_registers=199	key=NC_010473__3071621__-1__NC_010473__3071626__1__0____200__200__0__0	max_left=129	max_left_minus=0	max_left_plus=129	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=398	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=9.259e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=5
JC	397	.	NC_010473	3073526	-1	NC_010473	3073530	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.619e-02	junction_possible_overlap_registers=199	key=NC_010473__3073526__-1__NC_010473__3073530__1__0____200__200__0__0	max_left=140	max_left_minus=66	max_left_plus=140	max_min_left=68	max_min_left_minus=66	max_min_left_plus=68	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=398	max_right=135	max_right_minus=134	max_right_plus=135	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=7.619e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=4
JC	398	.	NC_010473	3075673	-1	NC_010473	3075677	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=5.569e-02	junction_possible_overlap_registers=198	key=NC_010473__3075673__-1__NC_010473__3075676__1__1____200__200__0__0	max_left=101	max_left_minus=0	max_left_plus=101	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=100	max_min_right_minus=0	max_min_right_plus=100	max_pos_hash_score=396	max_right=130	max_right_minus=0	max_right_plus=130	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.569e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=3
JC	399	.	NC_010473	3101096	-1	NC_010473	3101101	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.829e-02	junction_possible_overlap_registers=197	key=NC_010473__3101096__-1__NC_010473__3101099__1__2____200__200__0__0	max_left=178	max_left_minus=178	max_left_plus=0	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=19	max_min_right_minus=19	max_min_right_plus=0	max_pos_hash_score=394	max_right=141	max_right_minus=141	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.829e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	400	.	NC_010473	3119952	-1	NC_010473	3119956	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.145e-01	junction_possible_overlap_registers=198	key=NC_010473__3119952__-1__NC_010473__3119955__1__1____200__200__0__0	max_left=160	max_left_minus=0	max_left_plus=160	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=80	max_min_right_minus=0	max_min_right_plus=80	max_pos_hash_score=396	max_right=115	max_right_minus=0	max_right_plus=115	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.145e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=4
JC	401	.	NC_010473	3124497	-1	NC_010473	3124501	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.002e-01	junction_possible_overlap_registers=198	key=NC_010473__3124497__-1__NC_010473__3124500__1__1____200__200__0__0	max_left=188	max_left_minus=59	max_left_plus=188	max_min_left=99	max_min_left_minus=59	max_min_left_plus=99	max_min_right=13	max_min_right_minus=0	max_min_right_plus=13	max_pos_hash_score=396	max_right=140	max_right_minus=140	max_right_plus=138	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.002e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	402	.	NC_010473	3129169	-1	NC_010473	3129173	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.624e-02	junction_possible_overlap_registers=197	key=NC_010473__3129169__-1__NC_010473__3129171__1__2____200__200__0__0	max_left=145	max_left_minus=145	max_left_plus=0	max_min_left=8	max_min_left_minus=8	max_min_left_plus=0	max_min_right=82	max_min_right_minus=82	max_min_right_plus=0	max_pos_hash_score=394	max_right=189	max_right_minus=189	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	403	.	NC_010473	3138035	-1	NC_010473	3138039	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.791e-02	junction_possible_overlap_registers=199	key=NC_010473__3138035__-1__NC_010473__3138039__1__0____200__200__0__0	max_left=127	max_left_minus=127	max_left_plus=0	max_min_left=97	max_min_left_minus=97	max_min_left_plus=0	max_min_right=74	max_min_right_minus=74	max_min_right_plus=0	max_pos_hash_score=398	max_right=129	max_right_minus=129	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.791e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=4
JC	404	.	NC_010473	3138596	-1	NC_010473	3138600	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.570e-02	junction_possible_overlap_registers=196	key=NC_010473__3138596__-1__NC_010473__3138597__1__3____200__200__0__0	max_left=115	max_left_minus=115	max_left_plus=0	max_min_left=59	max_min_left_minus=59	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=392	max_right=150	max_right_minus=150	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.570e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=4
JC	405	.	NC_010473	3166741	-1	NC_010473	3166746	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.307e-01	junction_possible_overlap_registers=198	key=NC_010473__3166741__-1__NC_010473__3166745__1__1____200__200__0__0	max_left=178	max_left_minus=0	max_left_plus=178	max_min_left=49	max_min_left_minus=0	max_min_left_plus=49	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=396	max_right=190	max_right_minus=0	max_right_plus=190	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.307e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=6
JC	406	.	NC_010473	3170326	-1	NC_010473	3225914	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=22	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__3170326__-1__NC_010473__3225913__1__1____200__200__0__1	max_left=178	max_left_minus=178	max_left_plus=177	max_min_left=98	max_min_left_minus=89	max_min_left_plus=98	max_min_right=84	max_min_right_minus=84	max_min_right_plus=76	max_pos_hash_score=396	max_right=196	max_right_minus=175	max_right_plus=196	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	407	.	NC_010473	3182953	-1	NC_010473	3182959	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=5.357e-02	junction_possible_overlap_registers=199	key=NC_010473__3182953__-1__NC_010473__3182959__1__0____200__200__0__0	max_left=190	max_left_minus=0	max_left_plus=190	max_min_left=94	max_min_left_minus=0	max_min_left_plus=94	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=398	max_right=107	max_right_minus=0	max_right_plus=107	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.357e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.41	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.36	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=3
JC	408	.	NC_010473	3186151	-1	NC_010473	3186155	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.176e-02	junction_possible_overlap_registers=197	key=NC_010473__3186151__-1__NC_010473__3186153__1__2____200__200__0__0	max_left=126	max_left_minus=103	max_left_plus=126	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=71	max_pos_hash_score=394	max_right=167	max_right_minus=167	max_right_plus=71	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=7.176e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.37	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=4
JC	409	.	NC_010473	3186761	-1	NC_010473	3186765	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=5.348e-02	junction_possible_overlap_registers=196	key=NC_010473__3186761__-1__NC_010473__3186762__1__3____200__200__0__0	max_left=142	max_left_minus=91	max_left_plus=142	max_min_left=91	max_min_left_minus=91	max_min_left_plus=70	max_min_right=55	max_min_right_minus=0	max_min_right_plus=55	max_pos_hash_score=392	max_right=127	max_right_minus=104	max_right_plus=127	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.348e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.41	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.40	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=3
JC	410	.	NC_010473	3200471	-1	NC_010473	3200476	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.197e-02	junction_possible_overlap_registers=199	key=NC_010473__3200471__-1__NC_010473__3200476__1__0____200__200__0__1	max_left=134	max_left_minus=0	max_left_plus=134	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=65	max_min_right_minus=0	max_min_right_plus=65	max_pos_hash_score=398	max_right=165	max_right_minus=0	max_right_plus=165	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=8.197e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.46	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	411	.	NC_010473	3200540	-1	NC_010473	3213004	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=2.242e-01	junction_possible_overlap_registers=195	key=NC_010473__3200540__-1__NC_010473__3213000__1__4____200__200__0__0	max_left=118	max_left_minus=0	max_left_plus=118	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=80	max_min_right_minus=0	max_min_right_plus=80	max_pos_hash_score=390	max_right=147	max_right_minus=0	max_right_plus=147	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=2.242e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.42	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=16	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.32	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=12	side_2_redundant=0	total_non_overlap_reads=4
JC	412	.	NC_010473	3200540	1	NC_010473	3200536	-1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=195	key=NC_010473__3200540__1__NC_010473__3200540__-1__4____200__200__1__1	max_left=147	max_left_minus=147	max_left_plus=0	max_min_left=80	max_min_left_minus=80	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=390	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	413	.	NC_010473	3200797	-1	NC_010473	3632463	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=20	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__3200797__-1__NC_010473__3632463__-1__0____200__200__1__0	max_left=191	max_left_minus=191	max_left_plus=188	max_min_left=81	max_min_left_minus=76	max_min_left_plus=81	max_min_right=95	max_min_right_minus=86	max_min_right_plus=95	max_pos_hash_score=398	max_right=195	max_right_minus=174	max_right_plus=195	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.86	new_junction_read_count=33	polymorphism_frequency=9.706e-01	pos_hash_score=30	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=31
JC	414	.	NC_010473	3210540	-1	NC_010473	3210544	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=6.851e-02	junction_possible_overlap_registers=197	key=NC_010473__3210540__-1__NC_010473__3210542__1__2____200__200__0__0	max_left=144	max_left_minus=0	max_left_plus=144	max_min_left=49	max_min_left_minus=0	max_min_left_plus=49	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=394	max_right=170	max_right_minus=0	max_right_plus=170	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.851e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	415	.	NC_010473	3211929	1	NC_010473	3632455	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__3211928__1__NC_010473__3632455__1__1____200__200__1__0	max_left=189	max_left_minus=178	max_left_plus=189	max_min_left=99	max_min_left_minus=99	max_min_left_plus=79	max_min_right=89	max_min_right_minus=89	max_min_right_plus=65	max_pos_hash_score=396	max_right=197	max_right_minus=197	max_right_plus=197	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.79	new_junction_read_count=30	polymorphism_frequency=9.378e-01	pos_hash_score=27	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=27
JC	416	.	NC_010473	3212931	-1	NC_010473	3212936	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=199	key=NC_010473__3212931__-1__NC_010473__3212936__1__0____200__200__1__1	max_left=168	max_left_minus=168	max_left_plus=139	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=78	max_min_right_minus=31	max_min_right_plus=78	max_pos_hash_score=398	max_right=165	max_right_minus=31	max_right_plus=165	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=NA	pos_hash_score=7	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	417	.	NC_010473	3213000	1	NC_010473	3212996	-1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.538e-01	junction_possible_overlap_registers=195	key=NC_010473__3213000__1__NC_010473__3213000__-1__4____200__200__0__1	max_left=147	max_left_minus=147	max_left_plus=0	max_min_left=80	max_min_left_minus=80	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=390	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=2.538e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	418	.	NC_010473	3222837	-1	NC_010473	3222841	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.682e-02	junction_possible_overlap_registers=198	key=NC_010473__3222837__-1__NC_010473__3222840__1__1____200__200__0__0	max_left=153	max_left_minus=153	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=47	max_min_right_minus=47	max_min_right_plus=0	max_pos_hash_score=396	max_right=130	max_right_minus=130	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.682e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=3
JC	419	.	NC_010473	3232396	-1	NC_010473	3232400	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.391e-02	junction_possible_overlap_registers=196	key=NC_010473__3232396__-1__NC_010473__3232397__1__3____200__200__0__0	max_left=167	max_left_minus=0	max_left_plus=167	max_min_left=61	max_min_left_minus=0	max_min_left_plus=61	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=392	max_right=136	max_right_minus=0	max_right_plus=136	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.391e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	420	.	NC_010473	3235965	-1	NC_010473	3235969	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.221e-02	junction_possible_overlap_registers=196	key=NC_010473__3235965__-1__NC_010473__3235966__1__3____200__200__0__0	max_left=155	max_left_minus=0	max_left_plus=155	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=392	max_right=142	max_right_minus=0	max_right_plus=142	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=8.221e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	421	.	NC_010473	3275442	-1	NC_010473	3275446	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.692e-02	junction_possible_overlap_registers=199	key=NC_010473__3275442__-1__NC_010473__3275446__1__0____200__200__0__0	max_left=122	max_left_minus=0	max_left_plus=122	max_min_left=82	max_min_left_minus=0	max_min_left_plus=82	max_min_right=76	max_min_right_minus=0	max_min_right_plus=76	max_pos_hash_score=398	max_right=127	max_right_minus=0	max_right_plus=127	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.692e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	422	.	NC_010473	3280884	-1	NC_010473	3280888	1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.243e-01	junction_possible_overlap_registers=196	key=NC_010473__3280884__-1__NC_010473__3280885__1__3____200__200__0__0	max_left=192	max_left_minus=192	max_left_plus=0	max_min_left=58	max_min_left_minus=58	max_min_left_plus=0	max_min_right=56	max_min_right_minus=56	max_min_right_plus=0	max_pos_hash_score=392	max_right=139	max_right_minus=139	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.243e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=5
JC	423	.	NC_010473	3282052	-1	NC_010473	3282056	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__3282052__-1__NC_010473__3282055__1__1____200__200__0__1	max_left=169	max_left_minus=63	max_left_plus=169	max_min_left=63	max_min_left_minus=63	max_min_left_plus=58	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=396	max_right=184	max_right_minus=145	max_right_plus=184	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=8.189e-01	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=9
JC	424	.	NC_010473	3285880	-1	NC_010473	3285884	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=5.811e-02	junction_possible_overlap_registers=196	key=NC_010473__3285880__-1__NC_010473__3285881__1__3____200__200__0__0	max_left=152	max_left_minus=96	max_left_plus=152	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=93	max_pos_hash_score=392	max_right=96	max_right_minus=96	max_right_plus=93	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.811e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=3
JC	425	.	NC_010473	3286545	-1	NC_010473	3286549	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=9.681e-02	junction_possible_overlap_registers=196	key=NC_010473__3286545__-1__NC_010473__3286546__1__3____200__200__0__0	max_left=150	max_left_minus=0	max_left_plus=150	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=392	max_right=194	max_right_minus=0	max_right_plus=194	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=9.681e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=47	side_2_redundant=0	total_non_overlap_reads=5
JC	426	.	NC_010473	3286891	-1	NC_010473	3286895	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=5.687e-02	junction_possible_overlap_registers=197	key=NC_010473__3286891__-1__NC_010473__3286893__1__2____200__200__0__0	max_left=100	max_left_minus=100	max_left_plus=0	max_min_left=80	max_min_left_minus=80	max_min_left_plus=0	max_min_right=97	max_min_right_minus=97	max_min_right_plus=0	max_pos_hash_score=394	max_right=154	max_right_minus=154	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.687e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=3
JC	427	.	NC_010473	3306619	-1	NC_010473	3306623	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.395e-01	junction_possible_overlap_registers=197	key=NC_010473__3306619__-1__NC_010473__3306621__1__2____200__200__0__0	max_left=128	max_left_minus=0	max_left_plus=128	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=95	max_min_right_minus=0	max_min_right_plus=95	max_pos_hash_score=394	max_right=175	max_right_minus=0	max_right_plus=175	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.395e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=5
JC	428	.	NC_010473	3307359	-1	NC_010473	3307363	1	0	alignment_overlap=3	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.548e-01	junction_possible_overlap_registers=196	key=NC_010473__3307359__-1__NC_010473__3307360__1__3____200__200__0__0	max_left=195	max_left_minus=195	max_left_plus=0	max_min_left=85	max_min_left_minus=85	max_min_left_plus=0	max_min_right=36	max_min_right_minus=36	max_min_right_plus=0	max_pos_hash_score=392	max_right=150	max_right_minus=150	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.548e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=6
JC	429	.	NC_010473	3307532	-1	NC_010473	3307536	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.015e-01	junction_possible_overlap_registers=198	key=NC_010473__3307532__-1__NC_010473__3307535__1__1____200__200__0__0	max_left=50	max_left_minus=0	max_left_plus=50	max_min_left=50	max_min_left_minus=0	max_min_left_plus=50	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=396	max_right=196	max_right_minus=0	max_right_plus=196	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.015e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	430	.	NC_010473	3319470	-1	NC_010473	3319474	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.250e-01	junction_possible_overlap_registers=199	key=NC_010473__3319470__-1__NC_010473__3319474__1__0____200__200__0__0	max_left=197	max_left_minus=197	max_left_plus=0	max_min_left=77	max_min_left_minus=77	max_min_left_plus=0	max_min_right=84	max_min_right_minus=84	max_min_right_plus=0	max_pos_hash_score=398	max_right=124	max_right_minus=124	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.250e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=4
JC	431	.	NC_010473	3336748	1	NC_010473	3336744	-1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.535e-01	junction_possible_overlap_registers=195	key=NC_010473__3336748__1__NC_010473__3336748__-1__4____200__200__0__0	max_left=108	max_left_minus=108	max_left_plus=56	max_min_left=90	max_min_left_minus=90	max_min_left_plus=56	max_min_right=88	max_min_right_minus=88	max_min_right_plus=0	max_pos_hash_score=390	max_right=175	max_right_minus=175	max_right_plus=139	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.535e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=7
JC	432	.	NC_010473	3354965	-1	NC_010473	3354969	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.236e-01	junction_possible_overlap_registers=197	key=NC_010473__3354965__-1__NC_010473__3354967__1__2____200__200__0__0	max_left=134	max_left_minus=0	max_left_plus=134	max_min_left=25	max_min_left_minus=0	max_min_left_plus=25	max_min_right=87	max_min_right_minus=0	max_min_right_plus=87	max_pos_hash_score=394	max_right=171	max_right_minus=0	max_right_plus=171	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.236e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=4
JC	433	.	NC_010473	3359280	-1	NC_010473	3359284	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.414e-01	junction_possible_overlap_registers=197	key=NC_010473__3359280__-1__NC_010473__3359282__1__2____200__200__0__0	max_left=111	max_left_minus=111	max_left_plus=59	max_min_left=80	max_min_left_minus=80	max_min_left_plus=59	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=394	max_right=162	max_right_minus=162	max_right_plus=139	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.414e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=5
JC	434	.	NC_010473	3370649	-1	NC_010473	3370653	1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.705e-01	junction_possible_overlap_registers=195	key=NC_010473__3370649__-1__NC_010473__3370649__1__4____200__200__0__0	max_left=136	max_left_minus=136	max_left_plus=0	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=390	max_right=161	max_right_minus=161	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.705e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=6
JC	435	.	NC_010473	3398436	-1	NC_010473	3398440	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.875e-01	junction_possible_overlap_registers=199	key=NC_010473__3398436__-1__NC_010473__3398440__1__0____200__200__0__0	max_left=186	max_left_minus=0	max_left_plus=186	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=83	max_min_right_minus=0	max_min_right_plus=83	max_pos_hash_score=398	max_right=171	max_right_minus=0	max_right_plus=171	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.875e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=6
JC	436	.	NC_010473	3407155	-1	NC_010473	3407159	1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.282e-01	junction_possible_overlap_registers=199	key=NC_010473__3407155__-1__NC_010473__3407159__1__0____200__200__0__0	max_left=153	max_left_minus=153	max_left_plus=0	max_min_left=81	max_min_left_minus=81	max_min_left_plus=0	max_min_right=65	max_min_right_minus=65	max_min_right_plus=0	max_pos_hash_score=398	max_right=161	max_right_minus=161	max_right_plus=0	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.282e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=5
JC	437	.	NC_010473	3418425	-1	NC_010473	3418430	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.020e-01	junction_possible_overlap_registers=196	key=NC_010473__3418425__-1__NC_010473__3418427__1__3____200__200__0__0	max_left=192	max_left_minus=192	max_left_plus=74	max_min_left=74	max_min_left_minus=0	max_min_left_plus=74	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=392	max_right=167	max_right_minus=1	max_right_plus=167	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.020e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	438	.	NC_010473	3448422	-1	NC_010473	3448426	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.598e-01	junction_possible_overlap_registers=197	key=NC_010473__3448422__-1__NC_010473__3448424__1__2____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=0	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=91	max_min_right_minus=91	max_min_right_plus=0	max_pos_hash_score=394	max_right=173	max_right_minus=173	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.598e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=6
JC	439	.	NC_010473	3455549	-1	NC_010473	3455553	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=2.259e-01	junction_possible_overlap_registers=197	key=NC_010473__3455549__-1__NC_010473__3455551__1__2____200__200__0__0	max_left=196	max_left_minus=0	max_left_plus=196	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=41	max_min_right_minus=0	max_min_right_plus=41	max_pos_hash_score=394	max_right=174	max_right_minus=0	max_right_plus=174	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=2.259e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=9
JC	440	.	NC_010473	3458582	-1	NC_010473	3458587	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.126e-02	junction_possible_overlap_registers=195	key=NC_010473__3458582__-1__NC_010473__3458583__1__4____200__200__0__0	max_left=176	max_left_minus=0	max_left_plus=176	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=390	max_right=70	max_right_minus=0	max_right_plus=70	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.126e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	441	.	NC_010473	3458900	-1	NC_010473	3458904	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.756e-02	junction_possible_overlap_registers=199	key=NC_010473__3458900__-1__NC_010473__3458904__1__0____200__200__0__0	max_left=124	max_left_minus=124	max_left_plus=95	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=398	max_right=104	max_right_minus=89	max_right_plus=104	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=9.756e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	442	.	NC_010473	3462378	-1	NC_010473	3462382	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=2.390e-01	junction_possible_overlap_registers=198	key=NC_010473__3462379__-1__NC_010473__3462382__1__1____200__200__1__0	max_left=180	max_left_minus=180	max_left_plus=62	max_min_left=98	max_min_left_minus=98	max_min_left_plus=62	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=139	max_right_minus=118	max_right_plus=139	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=2.390e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.42	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=16	side_2_redundant=0	total_non_overlap_reads=5
JC	443	.	NC_010473	3471550	-1	NC_010473	3471554	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.277e-02	junction_possible_overlap_registers=196	key=NC_010473__3471550__-1__NC_010473__3471551__1__3____200__200__0__0	max_left=173	max_left_minus=173	max_left_plus=0	max_min_left=89	max_min_left_minus=89	max_min_left_plus=0	max_min_right=24	max_min_right_minus=24	max_min_right_plus=0	max_pos_hash_score=392	max_right=147	max_right_minus=147	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.277e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=3
JC	444	.	NC_010473	3480335	-1	NC_010473	3480339	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.977e-02	junction_possible_overlap_registers=199	key=NC_010473__3480335__-1__NC_010473__3480339__1__0____200__200__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=41	max_min_left_minus=41	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=0	max_pos_hash_score=398	max_right=162	max_right_minus=162	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.977e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	445	.	NC_010473	3496299	-1	NC_010473	3496303	1	0	alignment_overlap=3	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.701e-01	junction_possible_overlap_registers=196	key=NC_010473__3496299__-1__NC_010473__3496300__1__3____200__200__0__0	max_left=161	max_left_minus=161	max_left_plus=0	max_min_left=66	max_min_left_minus=66	max_min_left_plus=0	max_min_right=33	max_min_right_minus=33	max_min_right_plus=0	max_pos_hash_score=392	max_right=182	max_right_minus=182	max_right_plus=0	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.701e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=5
JC	446	.	NC_010473	3515599	-1	NC_010473	3515603	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=6.553e-02	junction_possible_overlap_registers=197	key=NC_010473__3515599__-1__NC_010473__3515601__1__2____200__200__0__0	max_left=120	max_left_minus=0	max_left_plus=120	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=98	max_min_right_minus=0	max_min_right_plus=98	max_pos_hash_score=394	max_right=187	max_right_minus=0	max_right_plus=187	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.553e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.11	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=3
JC	447	.	NC_010473	3526925	-1	NC_010473	3526930	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.256e-01	junction_possible_overlap_registers=197	key=NC_010473__3526925__-1__NC_010473__3526928__1__2____200__200__0__0	max_left=172	max_left_minus=172	max_left_plus=134	max_min_left=64	max_min_left_minus=0	max_min_left_plus=64	max_min_right=76	max_min_right_minus=23	max_min_right_plus=76	max_pos_hash_score=394	max_right=135	max_right_minus=23	max_right_plus=135	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.256e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=4
JC	448	.	NC_010473	3531741	-1	NC_010473	3531745	1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.697e-01	junction_possible_overlap_registers=197	key=NC_010473__3531741__-1__NC_010473__3531743__1__2____200__200__0__0	max_left=92	max_left_minus=92	max_left_plus=0	max_min_left=92	max_min_left_minus=92	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=166	max_right_minus=166	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.697e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=5
JC	449	.	NC_010473	3532856	-1	NC_010473	3532860	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.425e-02	junction_possible_overlap_registers=198	key=NC_010473__3532856__-1__NC_010473__3532859__1__1____200__200__0__0	max_left=154	max_left_minus=41	max_left_plus=154	max_min_left=41	max_min_left_minus=41	max_min_left_plus=0	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=396	max_right=160	max_right_minus=160	max_right_plus=77	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.425e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	450	.	NC_010473	3543064	-1	NC_010473	3543068	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.165e-02	junction_possible_overlap_registers=196	key=NC_010473__3543064__-1__NC_010473__3543065__1__3____200__200__0__0	max_left=72	max_left_minus=72	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=148	max_right_minus=148	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.165e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	451	.	NC_010473	3547025	-1	NC_010473	3547029	1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.661e-01	junction_possible_overlap_registers=195	key=NC_010473__3547025__-1__NC_010473__3547025__1__4____200__200__0__0	max_left=178	max_left_minus=178	max_left_plus=0	max_min_left=87	max_min_left_minus=87	max_min_left_plus=0	max_min_right=60	max_min_right_minus=60	max_min_right_plus=0	max_pos_hash_score=390	max_right=173	max_right_minus=173	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.661e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=7
JC	452	.	NC_010473	3555530	-1	NC_010473	3555534	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.076e-02	junction_possible_overlap_registers=198	key=NC_010473__3555530__-1__NC_010473__3555533__1__1____200__200__0__0	max_left=112	max_left_minus=112	max_left_plus=0	max_min_left=46	max_min_left_minus=46	max_min_left_plus=0	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=396	max_right=152	max_right_minus=152	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.076e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	453	.	NC_010473	3556126	-1	NC_010473	3556130	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.171e-01	junction_possible_overlap_registers=196	key=NC_010473__3556126__-1__NC_010473__3556127__1__3____200__200__0__0	max_left=170	max_left_minus=0	max_left_plus=170	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=89	max_min_right_minus=0	max_min_right_plus=89	max_pos_hash_score=392	max_right=157	max_right_minus=0	max_right_plus=157	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.171e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=4
JC	454	.	NC_010473	3556591	-1	NC_010473	3556596	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=9.922e-02	junction_possible_overlap_registers=197	key=NC_010473__3556591__-1__NC_010473__3556594__1__2____200__200__0__0	max_left=138	max_left_minus=0	max_left_plus=138	max_min_left=77	max_min_left_minus=0	max_min_left_plus=77	max_min_right=98	max_min_right_minus=0	max_min_right_plus=98	max_pos_hash_score=394	max_right=121	max_right_minus=0	max_right_plus=121	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.922e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=4
JC	455	.	NC_010473	3574727	1	NC_010473	3574723	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.530e-02	junction_possible_overlap_registers=195	key=NC_010473__3574727__1__NC_010473__3574727__-1__4____200__200__0__0	max_left=72	max_left_minus=72	max_left_plus=0	max_min_left=72	max_min_left_minus=72	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=154	max_right_minus=154	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.530e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=3
JC	456	.	NC_010473	3589843	1	NC_010473	3589839	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.931e-02	junction_possible_overlap_registers=195	key=NC_010473__3589843__1__NC_010473__3589843__-1__4____200__200__0__0	max_left=78	max_left_minus=78	max_left_plus=0	max_min_left=78	max_min_left_minus=78	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=157	max_right_minus=157	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.931e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.69	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=3
JC	457	.	NC_010473	3611872	-1	NC_010473	3611877	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=6.553e-02	junction_possible_overlap_registers=197	key=NC_010473__3611872__-1__NC_010473__3611875__1__2____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=111	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=74	max_min_right_plus=96	max_pos_hash_score=394	max_right=96	max_right_minus=74	max_right_plus=96	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.553e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	458	.	NC_010473	3616063	-1	NC_010473	3616067	1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.496e-01	junction_possible_overlap_registers=197	key=NC_010473__3616063__-1__NC_010473__3616065__1__2____200__200__0__0	max_left=154	max_left_minus=154	max_left_plus=42	max_min_left=92	max_min_left_minus=92	max_min_left_plus=42	max_min_right=89	max_min_right_minus=89	max_min_right_plus=0	max_pos_hash_score=394	max_right=156	max_right_minus=136	max_right_plus=156	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.496e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=7
JC	459	.	NC_010473	3625634	-1	NC_010473	3625638	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.579e-01	junction_possible_overlap_registers=199	key=NC_010473__3625634__-1__NC_010473__3625638__1__0____200__200__0__0	max_left=113	max_left_minus=44	max_left_plus=113	max_min_left=61	max_min_left_minus=44	max_min_left_plus=61	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=398	max_right=192	max_right_minus=152	max_right_plus=192	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.579e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=6
JC	460	.	NC_010473	3657879	-1	NC_010473	3657883	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=6.265e-02	junction_possible_overlap_registers=198	key=NC_010473__3657879__-1__NC_010473__3657882__1__1____200__200__0__0	max_left=111	max_left_minus=108	max_left_plus=111	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=92	max_min_right_minus=91	max_min_right_plus=92	max_pos_hash_score=396	max_right=103	max_right_minus=103	max_right_plus=92	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.265e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	461	.	NC_010473	3670506	-1	NC_010473	3670510	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=8.844e-02	junction_possible_overlap_registers=198	key=NC_010473__3670506__-1__NC_010473__3670509__1__1____200__200__0__0	max_left=145	max_left_minus=0	max_left_plus=145	max_min_left=66	max_min_left_minus=0	max_min_left_plus=66	max_min_right=89	max_min_right_minus=0	max_min_right_plus=89	max_pos_hash_score=396	max_right=137	max_right_minus=0	max_right_plus=137	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.844e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	462	.	NC_010473	3687001	-1	NC_010473	3687005	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=6.522e-02	junction_possible_overlap_registers=199	key=NC_010473__3687001__-1__NC_010473__3687005__1__0____200__200__0__0	max_left=158	max_left_minus=0	max_left_plus=158	max_min_left=92	max_min_left_minus=0	max_min_left_plus=92	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=398	max_right=111	max_right_minus=0	max_right_plus=111	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.522e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=3
JC	463	.	NC_010473	3689075	-1	NC_010473	3689079	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.407e-02	junction_possible_overlap_registers=199	key=NC_010473__3689075__-1__NC_010473__3689079__1__0____200__200__0__0	max_left=158	max_left_minus=158	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=85	max_min_right_minus=85	max_min_right_plus=0	max_pos_hash_score=398	max_right=85	max_right_minus=85	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.407e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	464	.	NC_010473	3699586	-1	NC_010473	3699590	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=1.053e-01	junction_possible_overlap_registers=199	key=NC_010473__3699586__-1__NC_010473__3699590__1__0____200__200__0__0	max_left=113	max_left_minus=48	max_left_plus=113	max_min_left=87	max_min_left_minus=48	max_min_left_plus=87	max_min_right=85	max_min_right_minus=0	max_min_right_plus=85	max_pos_hash_score=398	max_right=152	max_right_minus=152	max_right_plus=113	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.053e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	465	.	NC_010473	3702340	-1	NC_010473	3702345	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=10	flanking_left=200	flanking_right=200	frequency=2.145e-01	junction_possible_overlap_registers=195	key=NC_010473__3702340__-1__NC_010473__3702341__1__4____200__200__0__0	max_left=160	max_left_minus=0	max_left_plus=160	max_min_left=85	max_min_left_minus=0	max_min_left_plus=85	max_min_right=87	max_min_right_minus=0	max_min_right_plus=87	max_pos_hash_score=390	max_right=190	max_right_minus=0	max_right_plus=190	neg_log10_pos_hash_p_value=3.5	new_junction_coverage=0.27	new_junction_read_count=10	polymorphism_frequency=2.145e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=10
JC	466	.	NC_010473	3704769	-1	NC_010473	3704773	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.883e-02	junction_possible_overlap_registers=195	key=NC_010473__3704769__-1__NC_010473__3704769__1__4____200__200__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=49	max_min_left_minus=49	max_min_left_plus=0	max_min_right=81	max_min_right_minus=81	max_min_right_plus=0	max_pos_hash_score=390	max_right=146	max_right_minus=146	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.883e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=3
JC	467	.	NC_010473	3706329	-1	NC_010473	3706333	1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.223e-01	junction_possible_overlap_registers=195	key=NC_010473__3706329__-1__NC_010473__3706329__1__4____200__200__0__0	max_left=74	max_left_minus=74	max_left_plus=0	max_min_left=74	max_min_left_minus=74	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=172	max_right_minus=172	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.223e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=6
JC	468	.	NC_010473	3708287	-1	NC_010473	3708291	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.176e-02	junction_possible_overlap_registers=197	key=NC_010473__3708287__-1__NC_010473__3708289__1__2____200__200__0__0	max_left=112	max_left_minus=0	max_left_plus=112	max_min_left=83	max_min_left_minus=0	max_min_left_plus=83	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=394	max_right=121	max_right_minus=0	max_right_plus=121	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.176e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=3
JC	469	.	NC_010473	3720007	-1	NC_010473	3720012	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=6.929e-02	junction_possible_overlap_registers=197	key=NC_010473__3720007__-1__NC_010473__3720010__1__2____200__200__0__0	max_left=114	max_left_minus=0	max_left_plus=114	max_min_left=86	max_min_left_minus=0	max_min_left_plus=86	max_min_right=96	max_min_right_minus=0	max_min_right_plus=96	max_pos_hash_score=394	max_right=111	max_right_minus=0	max_right_plus=111	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.929e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	470	.	NC_010473	3721120	-1	NC_010473	3721124	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.585e-02	junction_possible_overlap_registers=195	key=NC_010473__3721120__-1__NC_010473__3721120__1__4____200__200__0__0	max_left=179	max_left_minus=179	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=390	max_right=69	max_right_minus=69	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.585e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=3
JC	471	.	NC_010473	3733455	1	NC_010473	3733451	-1	0	alignment_overlap=5	coverage_minus=2	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.348e-01	junction_possible_overlap_registers=194	key=NC_010473__3733455__1__NC_010473__3733456__-1__5____200__200__0__0	max_left=193	max_left_minus=79	max_left_plus=193	max_min_left=79	max_min_left_minus=79	max_min_left_plus=0	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=388	max_right=138	max_right_minus=138	max_right_plus=86	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.348e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	472	.	NC_010473	3739174	-1	NC_010473	3739178	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=3.457e-01	junction_possible_overlap_registers=199	key=NC_010473__3739174__-1__NC_010473__3739178__1__0____200__200__0__0	max_left=137	max_left_minus=137	max_left_plus=0	max_min_left=93	max_min_left_minus=93	max_min_left_plus=0	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=398	max_right=183	max_right_minus=183	max_right_plus=0	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.37	new_junction_read_count=14	polymorphism_frequency=3.457e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=10
JC	473	.	NC_010473	3742215	-1	NC_010473	3742220	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.141e-01	junction_possible_overlap_registers=197	key=NC_010473__3742215__-1__NC_010473__3742218__1__2____200__200__0__0	max_left=133	max_left_minus=0	max_left_plus=133	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=394	max_right=166	max_right_minus=0	max_right_plus=166	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.141e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=5
JC	474	.	NC_010473	3743029	-1	NC_010473	3743033	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=8.511e-02	junction_possible_overlap_registers=199	key=NC_010473__3743029__-1__NC_010473__3743033__1__0____200__200__0__0	max_left=167	max_left_minus=0	max_left_plus=167	max_min_left=78	max_min_left_minus=0	max_min_left_plus=78	max_min_right=77	max_min_right_minus=0	max_min_right_plus=77	max_pos_hash_score=398	max_right=134	max_right_minus=0	max_right_plus=134	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.511e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.12	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=43	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=43	side_2_redundant=0	total_non_overlap_reads=4
JC	475	.	NC_010473	3743353	-1	NC_010473	3743357	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=2.096e-01	junction_possible_overlap_registers=196	key=NC_010473__3743353__-1__NC_010473__3743354__1__3____200__200__0__0	max_left=196	max_left_minus=161	max_left_plus=196	max_min_left=80	max_min_left_minus=0	max_min_left_plus=80	max_min_right=61	max_min_right_minus=35	max_min_right_plus=61	max_pos_hash_score=392	max_right=186	max_right_minus=35	max_right_plus=186	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.26	new_junction_read_count=10	polymorphism_frequency=2.096e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=38	side_2_redundant=0	total_non_overlap_reads=9
JC	476	.	NC_010473	3744139	-1	NC_010473	3744144	1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.282e-02	junction_possible_overlap_registers=196	key=NC_010473__3744139__-1__NC_010473__3744141__1__3____200__200__0__0	max_left=167	max_left_minus=167	max_left_plus=45	max_min_left=45	max_min_left_minus=0	max_min_left_plus=45	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=392	max_right=153	max_right_minus=69	max_right_plus=153	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.282e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	477	.	NC_010473	3748859	-1	NC_010473	3748863	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=3.136e-01	junction_possible_overlap_registers=198	key=NC_010473__3748860__-1__NC_010473__3748863__1__1____200__200__1__0	max_left=180	max_left_minus=180	max_left_plus=62	max_min_left=98	max_min_left_minus=98	max_min_left_plus=62	max_min_right=52	max_min_right_minus=52	max_min_right_plus=0	max_pos_hash_score=396	max_right=139	max_right_minus=118	max_right_plus=139	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=3.136e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.29	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=11	side_2_redundant=0	total_non_overlap_reads=5
JC	478	.	NC_010473	3754841	-1	NC_010473	3754845	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=8.247e-02	junction_possible_overlap_registers=199	key=NC_010473__3754841__-1__NC_010473__3754845__1__0____200__200__0__0	max_left=169	max_left_minus=169	max_left_plus=130	max_min_left=44	max_min_left_minus=44	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=69	max_pos_hash_score=398	max_right=155	max_right_minus=155	max_right_plus=69	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=8.247e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.15	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=4
JC	479	.	NC_010473	3755009	1	NC_010473	3755005	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.006e-01	junction_possible_overlap_registers=192	key=NC_010473__3755009__1__NC_010473__3755012__-1__7____200__200__0__0	max_left=181	max_left_minus=48	max_left_plus=181	max_min_left=80	max_min_left_minus=48	max_min_left_plus=80	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_pos_hash_score=384	max_right=145	max_right_minus=145	max_right_plus=130	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.14	new_junction_read_count=5	polymorphism_frequency=1.006e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=7	side_1_possible_overlap_registers=199	side_1_read_count=46	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.22	side_2_overlap=0	side_2_possible_overlap_registers=192	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=5
JC	480	.	NC_010473	3789122	1	NC_010473	3789118	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.065e-01	junction_possible_overlap_registers=194	key=NC_010473__3789122__1__NC_010473__3789123__-1__5____200__200__0__0	max_left=120	max_left_minus=73	max_left_plus=120	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=76	max_min_right_minus=0	max_min_right_plus=76	max_pos_hash_score=388	max_right=177	max_right_minus=177	max_right_plus=76	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.065e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=4
JC	481	.	NC_010473	3801567	-1	NC_010473	3801571	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.101e-01	junction_possible_overlap_registers=198	key=NC_010473__3801567__-1__NC_010473__3801570__1__1____200__200__0__0	max_left=137	max_left_minus=0	max_left_plus=137	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=78	max_min_right_minus=0	max_min_right_plus=78	max_pos_hash_score=396	max_right=186	max_right_minus=0	max_right_plus=186	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.101e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=5
JC	482	.	NC_010473	3805160	-1	NC_010473	3805164	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.136e-01	junction_possible_overlap_registers=199	key=NC_010473__3805160__-1__NC_010473__3805164__1__0____200__200__0__0	max_left=127	max_left_minus=0	max_left_plus=127	max_min_left=91	max_min_left_minus=0	max_min_left_plus=91	max_min_right=86	max_min_right_minus=0	max_min_right_plus=86	max_pos_hash_score=398	max_right=160	max_right_minus=0	max_right_plus=160	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.136e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.02	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=5
JC	483	.	NC_010473	3809381	-1	NC_010473	3809385	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.407e-02	junction_possible_overlap_registers=199	key=NC_010473__3809381__-1__NC_010473__3809385__1__0____200__200__0__0	max_left=157	max_left_minus=157	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=55	max_min_right_minus=55	max_min_right_plus=0	max_pos_hash_score=398	max_right=184	max_right_minus=184	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.407e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	484	.	NC_010473	3816235	1	NC_010473	4028795	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=16	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=197	key=NC_010473__3816233__1__NC_010473__4028795__1__2____200__200__1__0	max_left=194	max_left_minus=190	max_left_plus=194	max_min_left=90	max_min_left_minus=90	max_min_left_plus=90	max_min_right=92	max_min_right_minus=85	max_min_right_plus=92	max_pos_hash_score=394	max_right=178	max_right_minus=173	max_right_plus=178	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=36	polymorphism_frequency=9.479e-01	pos_hash_score=33	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=2	side_2_possible_overlap_registers=199	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=34
JC	485	.	NC_010473	3817675	-1	NC_010473	4028799	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=13	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__3817675__-1__NC_010473__4028799__-1__0____200__200__1__0	max_left=199	max_left_minus=199	max_left_plus=196	max_min_left=98	max_min_left_minus=98	max_min_left_plus=84	max_min_right=92	max_min_right_minus=72	max_min_right_plus=92	max_pos_hash_score=398	max_right=187	max_right_minus=187	max_right_plus=180	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.65	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	486	.	NC_010473	3822126	-1	NC_010473	3822130	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.683e-02	junction_possible_overlap_registers=197	key=NC_010473__3822126__-1__NC_010473__3822128__1__2____200__200__0__0	max_left=181	max_left_minus=135	max_left_plus=181	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=19	max_pos_hash_score=394	max_right=142	max_right_minus=142	max_right_plus=19	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.683e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	487	.	NC_010473	3825974	1	NC_010473	3825970	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.515e-02	junction_possible_overlap_registers=195	key=NC_010473__3825974__1__NC_010473__3825974__-1__4____200__200__0__0	max_left=184	max_left_minus=184	max_left_plus=0	max_min_left=51	max_min_left_minus=51	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=0	max_pos_hash_score=390	max_right=144	max_right_minus=144	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.515e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=3
JC	488	.	NC_010473	3831072	-1	NC_010473	3831076	1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.084e-01	junction_possible_overlap_registers=198	key=NC_010473__3831072__-1__NC_010473__3831075__1__1____200__200__0__0	max_left=165	max_left_minus=165	max_left_plus=0	max_min_left=60	max_min_left_minus=60	max_min_left_plus=0	max_min_right=48	max_min_right_minus=48	max_min_right_plus=0	max_pos_hash_score=396	max_right=161	max_right_minus=161	max_right_plus=0	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.084e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=4
JC	489	.	NC_010473	3836097	-1	NC_010473	3836101	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=1.830e-01	junction_possible_overlap_registers=196	key=NC_010473__3836097__-1__NC_010473__3836098__1__3____200__200__0__0	max_left=120	max_left_minus=120	max_left_plus=118	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=78	max_min_right_minus=77	max_min_right_plus=78	max_pos_hash_score=392	max_right=151	max_right_minus=77	max_right_plus=151	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.830e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=3
JC	490	.	NC_010473	3838110	-1	NC_010473	3838114	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=4.474e-01	junction_possible_overlap_registers=199	key=NC_010473__3838110__-1__NC_010473__3838114__1__0____200__200__0__0	max_left=196	max_left_minus=196	max_left_plus=70	max_min_left=86	max_min_left_minus=86	max_min_left_plus=70	max_min_right=73	max_min_right_minus=73	max_min_right_plus=0	max_pos_hash_score=398	max_right=197	max_right_minus=197	max_right_plus=147	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.44	new_junction_read_count=17	polymorphism_frequency=4.474e-01	pos_hash_score=16	prediction=polymorphism	reject=POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=17
JC	491	.	NC_010473	3880539	-1	NC_010473	3880543	1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.804e-02	junction_possible_overlap_registers=197	key=NC_010473__3880539__-1__NC_010473__3880541__1__2____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=0	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=394	max_right=114	max_right_minus=114	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=7.804e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=4
JC	492	.	NC_010473	3891410	-1	NC_010473	3891416	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.710e-02	junction_possible_overlap_registers=198	key=NC_010473__3891410__-1__NC_010473__3891415__1__1____200__200__0__0	max_left=123	max_left_minus=123	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=101	max_min_right_minus=101	max_min_right_plus=0	max_pos_hash_score=396	max_right=124	max_right_minus=124	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.710e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	493	.	NC_010473	3901321	-1	NC_010473	3901325	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=5.505e-02	junction_possible_overlap_registers=199	key=NC_010473__3901321__-1__NC_010473__3901325__1__0____200__200__0__0	max_left=178	max_left_minus=178	max_left_plus=152	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=73	max_min_right_minus=25	max_min_right_plus=73	max_pos_hash_score=398	max_right=73	max_right_minus=25	max_right_plus=73	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.505e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.36	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.33	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=51	side_2_redundant=0	total_non_overlap_reads=3
JC	494	.	NC_010473	3901484	-1	NC_010473	3901488	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=5.867e-02	junction_possible_overlap_registers=196	key=NC_010473__3901484__-1__NC_010473__3901485__1__3____200__200__0__0	max_left=132	max_left_minus=132	max_left_plus=0	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=79	max_min_right_minus=79	max_min_right_plus=0	max_pos_hash_score=392	max_right=195	max_right_minus=195	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.867e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.28	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=49	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.27	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	495	.	NC_010473	3903356	-1	NC_010473	3903360	1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.309e-02	junction_possible_overlap_registers=195	key=NC_010473__3903356__-1__NC_010473__3903356__1__4____200__200__0__0	max_left=82	max_left_minus=82	max_left_plus=0	max_min_left=82	max_min_left_minus=82	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=390	max_right=147	max_right_minus=147	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.309e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=45	side_2_redundant=0	total_non_overlap_reads=3
JC	496	.	NC_010473	3917724	-1	NC_010473	3917747	1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=17	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__3917724__-1__NC_010473__3917747__1__0____200__200__0__0	max_left=197	max_left_minus=185	max_left_plus=197	max_min_left=97	max_min_left_minus=97	max_min_left_plus=91	max_min_right=96	max_min_right_minus=96	max_min_right_plus=56	max_pos_hash_score=398	max_right=192	max_right_minus=190	max_right_plus=192	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=43
JC	497	.	NC_010473	3924259	-1	NC_010473	3924263	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=5.941e-02	junction_possible_overlap_registers=199	key=NC_010473__3924259__-1__NC_010473__3924263__1__0____200__200__0__0	max_left=95	max_left_minus=95	max_left_plus=0	max_min_left=95	max_min_left_minus=95	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=398	max_right=168	max_right_minus=168	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=5.941e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=47	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=48	side_2_redundant=0	total_non_overlap_reads=3
JC	498	.	NC_010473	3930032	-1	NC_010473	3930036	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=9	flanking_left=200	flanking_right=200	frequency=2.156e-01	junction_possible_overlap_registers=196	key=NC_010473__3930032__-1__NC_010473__3930033__1__3____200__200__0__0	max_left=171	max_left_minus=0	max_left_plus=171	max_min_left=85	max_min_left_minus=0	max_min_left_plus=85	max_min_right=58	max_min_right_minus=0	max_min_right_plus=58	max_pos_hash_score=392	max_right=188	max_right_minus=0	max_right_plus=188	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=2.156e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=33	side_2_redundant=0	total_non_overlap_reads=9
JC	499	.	NC_010473	3932070	1	NC_010473	3932066	-1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.441e-01	junction_possible_overlap_registers=195	key=NC_010473__3932070__1__NC_010473__3932070__-1__4____200__200__0__0	max_left=173	max_left_minus=173	max_left_plus=0	max_min_left=78	max_min_left_minus=78	max_min_left_plus=0	max_min_right=53	max_min_right_minus=53	max_min_right_plus=0	max_pos_hash_score=390	max_right=193	max_right_minus=193	max_right_plus=0	neg_log10_pos_hash_p_value=5.0	new_junction_coverage=0.19	new_junction_read_count=7	polymorphism_frequency=1.441e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=6
JC	500	.	NC_010473	3935046	-1	NC_010473	3935050	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=7.374e-02	junction_possible_overlap_registers=197	key=NC_010473__3935046__-1__NC_010473__3935048__1__2____200__200__0__0	max_left=158	max_left_minus=146	max_left_plus=158	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=37	max_pos_hash_score=394	max_right=104	max_right_minus=104	max_right_plus=37	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=7.374e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=50	side_2_redundant=0	total_non_overlap_reads=4
JC	501	.	NC_010473	3957879	-1	NC_010473	3957883	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.260e-02	junction_possible_overlap_registers=195	key=NC_010473__3957879__-1__NC_010473__3957879__1__4____200__200__0__0	max_left=172	max_left_minus=166	max_left_plus=172	max_min_left=96	max_min_left_minus=96	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=28	max_pos_hash_score=390	max_right=152	max_right_minus=152	max_right_plus=28	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=9.260e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.30	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=50	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=5
JC	502	.	NC_010473	3959225	-1	NC_010473	3959231	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=9.346e-02	junction_possible_overlap_registers=199	key=NC_010473__3959225__-1__NC_010473__3959231__1__0____200__200__0__0	max_left=182	max_left_minus=0	max_left_plus=182	max_min_left=84	max_min_left_minus=0	max_min_left_plus=84	max_min_right=67	max_min_right_minus=0	max_min_right_plus=67	max_pos_hash_score=398	max_right=196	max_right_minus=0	max_right_plus=196	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=9.346e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.25	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=48	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=5
JC	503	.	NC_010473	3963601	-1	NC_010473	3963606	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=7.829e-02	junction_possible_overlap_registers=197	key=NC_010473__3963601__-1__NC_010473__3963604__1__2____200__200__0__0	max_left=160	max_left_minus=137	max_left_plus=160	max_min_left=46	max_min_left_minus=0	max_min_left_plus=46	max_min_right=67	max_min_right_minus=67	max_min_right_plus=38	max_pos_hash_score=394	max_right=152	max_right_minus=67	max_right_plus=152	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.829e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=3
JC	504	.	NC_010473	3983879	-1	NC_010473	3983884	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.649e-02	junction_possible_overlap_registers=196	key=NC_010473__3983879__-1__NC_010473__3983881__1__3____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=0	max_min_left=56	max_min_left_minus=56	max_min_left_plus=0	max_min_right=42	max_min_right_minus=42	max_min_right_plus=0	max_pos_hash_score=392	max_right=141	max_right_minus=141	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.649e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	505	.	NC_010473	3994718	-1	NC_010473	3994722	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.515e-01	junction_possible_overlap_registers=199	key=NC_010473__3994718__-1__NC_010473__3994722__1__0____200__200__0__0	max_left=174	max_left_minus=0	max_left_plus=174	max_min_left=93	max_min_left_minus=0	max_min_left_plus=93	max_min_right=63	max_min_right_minus=0	max_min_right_plus=63	max_pos_hash_score=398	max_right=160	max_right_minus=0	max_right_plus=160	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.515e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=5
JC	506	.	NC_010473	4015863	-1	NC_010473	4015867	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=2.388e-01	junction_possible_overlap_registers=199	key=NC_010473__4015863__-1__NC_010473__4015867__1__0____200__200__0__0	max_left=140	max_left_minus=140	max_left_plus=0	max_min_left=80	max_min_left_minus=80	max_min_left_plus=0	max_min_right=93	max_min_right_minus=93	max_min_right_plus=0	max_pos_hash_score=398	max_right=165	max_right_minus=165	max_right_plus=0	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.21	new_junction_read_count=8	polymorphism_frequency=2.388e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=8
JC	507	.	NC_010473	4043419	-1	NC_010473	4043423	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=3.333e-01	junction_possible_overlap_registers=199	key=NC_010473__4043419__-1__NC_010473__4043423__1__0____200__200__1__0	max_left=194	max_left_minus=194	max_left_plus=73	max_min_left=80	max_min_left_minus=80	max_min_left_plus=73	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=398	max_right=126	max_right_minus=120	max_right_plus=126	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=3.333e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.26	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=5
JC	508	.	NC_010473	4044391	-1	NC_010473	4044395	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.194e-01	junction_possible_overlap_registers=199	key=NC_010473__4044391__-1__NC_010473__4044395__1__0____200__200__0__0	max_left=187	max_left_minus=0	max_left_plus=187	max_min_left=69	max_min_left_minus=0	max_min_left_plus=69	max_min_right=28	max_min_right_minus=0	max_min_right_plus=28	max_pos_hash_score=398	max_right=155	max_right_minus=0	max_right_plus=155	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.194e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=4
JC	509	.	NC_010473	4066972	-1	NC_010473	4066976	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.046e-01	junction_possible_overlap_registers=196	key=NC_010473__4066972__-1__NC_010473__4066973__1__3____200__200__0__0	max_left=96	max_left_minus=0	max_left_plus=96	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=392	max_right=169	max_right_minus=0	max_right_plus=169	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.046e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	510	.	NC_010473	4075274	-1	NC_010473	4075278	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.146e-02	junction_possible_overlap_registers=197	key=NC_010473__4075274__-1__NC_010473__4075276__1__2____200__200__0__0	max_left=98	max_left_minus=98	max_left_plus=0	max_min_left=98	max_min_left_minus=98	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=394	max_right=176	max_right_minus=176	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.146e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=3
JC	511	.	NC_010473	4109890	-1	NC_010473	4109894	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.293e-01	junction_possible_overlap_registers=198	key=NC_010473__4109890__-1__NC_010473__4109893__1__1____200__200__0__0	max_left=149	max_left_minus=0	max_left_plus=149	max_min_left=58	max_min_left_minus=0	max_min_left_plus=58	max_min_right=56	max_min_right_minus=0	max_min_right_plus=56	max_pos_hash_score=396	max_right=142	max_right_minus=0	max_right_plus=142	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.293e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.70	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=27	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=4
JC	512	.	NC_010473	4112252	-1	NC_010473	4112257	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=4	flanking_left=200	flanking_right=200	frequency=1.754e-01	junction_possible_overlap_registers=199	key=NC_010473__4112252__-1__NC_010473__4112257__1__0____200__200__0__0	max_left=104	max_left_minus=104	max_left_plus=65	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=398	max_right=160	max_right_minus=94	max_right_plus=160	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.754e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.57	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=5
JC	513	.	NC_010473	4124836	-1	NC_010473	4124840	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.553e-02	junction_possible_overlap_registers=196	key=NC_010473__4124836__-1__NC_010473__4124837__1__3____200__200__0__0	max_left=193	max_left_minus=193	max_left_plus=0	max_min_left=58	max_min_left_minus=58	max_min_left_plus=0	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=392	max_right=139	max_right_minus=139	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.553e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	514	.	NC_010473	4132054	-1	NC_010473	4132058	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.692e-02	junction_possible_overlap_registers=199	key=NC_010473__4132054__-1__NC_010473__4132058__1__0____200__200__0__0	max_left=170	max_left_minus=170	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=99	max_min_right_minus=99	max_min_right_plus=0	max_pos_hash_score=398	max_right=99	max_right_minus=99	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.692e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	515	.	NC_010473	4134345	-1	NC_010473	4134349	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.076e-01	junction_possible_overlap_registers=198	key=NC_010473__4134345__-1__NC_010473__4134348__1__1____200__200__0__1	max_left=122	max_left_minus=122	max_left_plus=0	max_min_left=58	max_min_left_minus=58	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=396	max_right=155	max_right_minus=155	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.076e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	516	.	NC_010473	4136166	-1	NC_010473	4136170	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=5.013e-01	junction_possible_overlap_registers=198	key=NC_010473__4136167__-1__NC_010473__4136170__1__1____200__200__1__0	max_left=188	max_left_minus=188	max_left_plus=146	max_min_left=41	max_min_left_minus=0	max_min_left_plus=41	max_min_right=56	max_min_right_minus=11	max_min_right_plus=56	max_pos_hash_score=396	max_right=157	max_right_minus=11	max_right_plus=157	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=5.013e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=1	side_2_possible_overlap_registers=199	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=4
JC	517	.	NC_010473	4137235	-1	NC_010473	4137239	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=199	key=NC_010473__4137235__-1__NC_010473__4137239__1__0____200__200__1__0	max_left=194	max_left_minus=194	max_left_plus=73	max_min_left=80	max_min_left_minus=80	max_min_left_plus=73	max_min_right=62	max_min_right_minus=62	max_min_right_plus=0	max_pos_hash_score=398	max_right=126	max_right_minus=120	max_right_plus=126	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.000e+00	pos_hash_score=5	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=5
JC	518	.	NC_010473	4161463	-1	NC_010473	4161467	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.357e-01	junction_possible_overlap_registers=197	key=NC_010473__4161463__-1__NC_010473__4161465__1__2____200__200__0__0	max_left=120	max_left_minus=0	max_left_plus=120	max_min_left=70	max_min_left_minus=0	max_min_left_plus=70	max_min_right=82	max_min_right_minus=0	max_min_right_plus=82	max_pos_hash_score=394	max_right=156	max_right_minus=0	max_right_plus=156	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.357e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	519	.	NC_010473	4182731	1	NC_010473	4182727	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.178e-02	junction_possible_overlap_registers=195	key=NC_010473__4182731__1__NC_010473__4182731__-1__4____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=390	max_right=75	max_right_minus=75	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=9.178e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.81	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=31	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=3
JC	520	.	NC_010473	4186240	-1	NC_010473	4186244	1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=2	flanking_left=200	flanking_right=200	frequency=1.382e-01	junction_possible_overlap_registers=198	key=NC_010473__4186240__-1__NC_010473__4186243__1__1____200__200__0__0	max_left=113	max_left_minus=113	max_left_plus=71	max_min_left=71	max_min_left_minus=61	max_min_left_plus=71	max_min_right=86	max_min_right_minus=86	max_min_right_plus=0	max_pos_hash_score=396	max_right=140	max_right_minus=138	max_right_plus=140	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.382e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=25	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=4
JC	521	.	NC_010473	4220333	-1	NC_010473	4220337	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.548e-01	junction_possible_overlap_registers=196	key=NC_010473__4220333__-1__NC_010473__4220334__1__3____200__200__0__0	max_left=188	max_left_minus=188	max_left_plus=0	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=35	max_min_right_minus=35	max_min_right_plus=0	max_pos_hash_score=392	max_right=147	max_right_minus=147	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.548e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=22	side_2_redundant=0	total_non_overlap_reads=4
JC	522	.	NC_010473	4269485	-1	NC_010473	4310891	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.897e-01	junction_possible_overlap_registers=195	key=NC_010473__4269485__-1__NC_010473__4310887__1__4____200__200__0__0	max_left=166	max_left_minus=166	max_left_plus=79	max_min_left=79	max_min_left_minus=79	max_min_left_plus=79	max_min_right=74	max_min_right_minus=74	max_min_right_plus=0	max_pos_hash_score=390	max_right=121	max_right_minus=121	max_right_plus=116	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.897e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.37	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=29	side_2_redundant=0	total_non_overlap_reads=5
JC	523	.	NC_010473	4276079	-1	NC_010473	4276083	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.206e-01	junction_possible_overlap_registers=197	key=NC_010473__4276079__-1__NC_010473__4276081__1__2____200__200__0__0	max_left=146	max_left_minus=146	max_left_plus=0	max_min_left=71	max_min_left_minus=71	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=394	max_right=126	max_right_minus=126	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.206e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=3
JC	524	.	NC_010473	4296509	-1	NC_010473	4297181	1	-72	alignment_overlap=-72	coverage_minus=13	coverage_plus=14	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=127	key=NC_010473__4296509__-1__NC_010473__4297181__1__-72__GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACCTTCGCATGCACGCAGCATATGC__200__200__0__0	max_left=126	max_left_minus=124	max_left_plus=126	max_min_left=62	max_min_left_minus=62	max_min_left_plus=56	max_min_right=65	max_min_right_minus=50	max_min_right_plus=65	max_pos_hash_score=254	max_right=108	max_right_minus=90	max_right_plus=108	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27	unique_read_sequence=GAGCGGCCGCCACCGCGGGAAGTTCCTATACTTTCTAGAGAATAGGAACCTTCGCATGCACGCAGCATATGC
JC	525	.	NC_010473	4297871	-1	NC_010473	4297875	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=9.823e-02	junction_possible_overlap_registers=196	key=NC_010473__4297871__-1__NC_010473__4297872__1__3____200__200__0__0	max_left=152	max_left_minus=152	max_left_plus=142	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=62	max_min_right_plus=58	max_pos_hash_score=392	max_right=62	max_right_minus=62	max_right_plus=58	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.823e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.98	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=4
JC	526	.	NC_010473	4299673	-1	NC_010473	4299677	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=7.500e-02	junction_possible_overlap_registers=199	key=NC_010473__4299673__-1__NC_010473__4299677__1__0____200__200__0__0	max_left=163	max_left_minus=0	max_left_plus=163	max_min_left=65	max_min_left_minus=0	max_min_left_plus=65	max_min_right=53	max_min_right_minus=0	max_min_right_plus=53	max_pos_hash_score=398	max_right=135	max_right_minus=0	max_right_plus=135	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.500e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=37	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=3
JC	527	.	NC_010473	4302256	-1	NC_010473	4302260	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.240e-01	junction_possible_overlap_registers=197	key=NC_010473__4302256__-1__NC_010473__4302258__1__2____200__200__0__0	max_left=99	max_left_minus=0	max_left_plus=99	max_min_left=98	max_min_left_minus=0	max_min_left_plus=98	max_min_right=99	max_min_right_minus=0	max_min_right_plus=99	max_pos_hash_score=394	max_right=188	max_right_minus=0	max_right_plus=188	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.240e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=5
JC	528	.	NC_010473	4310883	-1	NC_010473	4310887	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.429e-01	junction_possible_overlap_registers=199	key=NC_010473__4310883__-1__NC_010473__4310887__1__0____200__200__0__0	max_left=166	max_left_minus=166	max_left_plus=79	max_min_left=79	max_min_left_minus=79	max_min_left_plus=79	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=398	max_right=125	max_right_minus=125	max_right_plus=120	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.429e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=30	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.78	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=30	side_2_redundant=0	total_non_overlap_reads=5
JC	529	.	NC_010473	4319961	1	NC_010473	4319956	-1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=7.517e-02	junction_possible_overlap_registers=193	key=NC_010473__4319961__1__NC_010473__4319962__-1__6____200__200__0__0	max_left=186	max_left_minus=186	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=94	max_min_right_minus=94	max_min_right_plus=0	max_pos_hash_score=386	max_right=94	max_right_minus=94	max_right_plus=0	neg_log10_pos_hash_p_value=6.5	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=7.517e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=6	side_1_possible_overlap_registers=199	side_1_read_count=39	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=193	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=3
JC	530	.	NC_010473	4322676	-1	NC_010473	4322680	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.962e-02	junction_possible_overlap_registers=195	key=NC_010473__4322676__-1__NC_010473__4322676__1__4____200__200__0__0	max_left=113	max_left_minus=113	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=83	max_min_right_minus=83	max_min_right_plus=0	max_pos_hash_score=390	max_right=152	max_right_minus=152	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=6.962e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.41	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.44	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=54	side_2_redundant=0	total_non_overlap_reads=4
JC	531	.	NC_010473	4344820	1	NC_010473	4344816	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.022e-01	junction_possible_overlap_registers=195	key=NC_010473__4344820__1__NC_010473__4344820__-1__4____200__200__0__0	max_left=136	max_left_minus=136	max_left_plus=133	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=65	max_min_right_minus=60	max_min_right_plus=65	max_pos_hash_score=390	max_right=137	max_right_minus=137	max_right_plus=65	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.022e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=36	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=35	side_2_redundant=0	total_non_overlap_reads=4
JC	532	.	NC_010473	4404555	-1	NC_010473	4404559	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=8.592e-02	junction_possible_overlap_registers=198	key=NC_010473__4404555__-1__NC_010473__4404558__1__1____200__200__0__0	max_left=196	max_left_minus=196	max_left_plus=0	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=0	max_pos_hash_score=396	max_right=108	max_right_minus=108	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=8.592e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=33	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=31	side_2_redundant=0	total_non_overlap_reads=3
JC	533	.	NC_010473	4424235	1	NC_010473	4658922	1	-43	alignment_overlap=-43	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.406e-01	junction_possible_overlap_registers=156	key=NC_010473__4424235__1__NC_010473__4658922__1__-43__GTCGTGCGCAGATGCCTGATGCGACGCTAACGCGTCTTATCAG__200__200__0__0	max_left=89	max_left_minus=70	max_left_plus=89	max_min_left=70	max_min_left_minus=70	max_min_left_plus=0	max_min_right=60	max_min_right_minus=0	max_min_right_plus=60	max_pos_hash_score=312	max_right=85	max_right_minus=85	max_right_plus=60	neg_log10_pos_hash_p_value=4.9	new_junction_coverage=0.17	new_junction_read_count=5	polymorphism_frequency=1.406e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GTCGTGCGCAGATGCCTGATGCGACGCTAACGCGTCTTATCAG
JC	534	.	NC_010473	4429051	-1	NC_010473	4429055	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.977e-02	junction_possible_overlap_registers=199	key=NC_010473__4429051__-1__NC_010473__4429055__1__0____200__200__0__0	max_left=113	max_left_minus=113	max_left_plus=0	max_min_left=68	max_min_left_minus=68	max_min_left_plus=0	max_min_right=87	max_min_right_minus=87	max_min_right_plus=0	max_pos_hash_score=398	max_right=138	max_right_minus=138	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.977e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=3
JC	535	.	NC_010473	4454036	1	NC_010473	4454032	-1	0	alignment_overlap=5	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.392e-02	junction_possible_overlap_registers=194	key=NC_010473__4454036__1__NC_010473__4454037__-1__5____200__200__0__0	max_left=136	max_left_minus=136	max_left_plus=0	max_min_left=73	max_min_left_minus=73	max_min_left_plus=0	max_min_right=61	max_min_right_minus=61	max_min_right_plus=0	max_pos_hash_score=388	max_right=127	max_right_minus=127	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.392e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.17	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=45	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=3
JC	536	.	NC_010473	4458400	-1	NC_010473	4458405	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=6	flanking_left=200	flanking_right=200	frequency=1.382e-01	junction_possible_overlap_registers=198	key=NC_010473__4458400__-1__NC_010473__4458404__1__1____200__200__0__0	max_left=133	max_left_minus=0	max_left_plus=133	max_min_left=89	max_min_left_minus=0	max_min_left_plus=89	max_min_right=70	max_min_right_minus=0	max_min_right_plus=70	max_pos_hash_score=396	max_right=191	max_right_minus=0	max_right_plus=191	neg_log10_pos_hash_p_value=5.1	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.382e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.99	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=38	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=37	side_2_redundant=0	total_non_overlap_reads=6
JC	537	.	NC_010473	4459991	1	NC_010473	4459987	-1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.303e-02	junction_possible_overlap_registers=194	key=NC_010473__4459991__1__NC_010473__4459992__-1__5____200__200__0__0	max_left=148	max_left_minus=148	max_left_plus=0	max_min_left=90	max_min_left_minus=90	max_min_left_plus=0	max_min_right=71	max_min_right_minus=71	max_min_right_plus=0	max_pos_hash_score=388	max_right=116	max_right_minus=116	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.303e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.04	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=40	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=4
JC	538	.	NC_010473	4468956	-1	NC_010473	4468961	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=2.222e-01	junction_possible_overlap_registers=199	key=NC_010473__4468956__-1__NC_010473__4468961__1__0____200__200__0__0	max_left=179	max_left_minus=179	max_left_plus=167	max_min_left=90	max_min_left_minus=90	max_min_left_plus=74	max_min_right=42	max_min_right_minus=39	max_min_right_plus=42	max_pos_hash_score=398	max_right=128	max_right_minus=115	max_right_plus=128	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=2.222e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=25	side_2_redundant=0	total_non_overlap_reads=7
JC	539	.	NC_010473	4475122	-1	NC_010473	4475126	1	0	alignment_overlap=3	coverage_minus=4	coverage_plus=1	flanking_left=200	flanking_right=200	frequency=1.549e-01	junction_possible_overlap_registers=196	key=NC_010473__4475122__-1__NC_010473__4475123__1__3____200__200__0__0	max_left=186	max_left_minus=186	max_left_plus=143	max_min_left=60	max_min_left_minus=60	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=50	max_pos_hash_score=392	max_right=141	max_right_minus=141	max_right_plus=50	neg_log10_pos_hash_p_value=5.5	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.549e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=3	side_1_possible_overlap_registers=199	side_1_read_count=34	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=196	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	540	.	NC_010473	4518997	-1	NC_010473	4519006	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.667e-02	junction_possible_overlap_registers=199	key=NC_010473__4518997__-1__NC_010473__4519006__1__0____200__200__0__0	max_left=129	max_left_minus=129	max_left_plus=0	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=92	max_min_right_minus=92	max_min_right_plus=0	max_pos_hash_score=398	max_right=115	max_right_minus=115	max_right_plus=0	neg_log10_pos_hash_p_value=6.7	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.667e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=42	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.10	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=42	side_2_redundant=0	total_non_overlap_reads=3
JC	541	.	NC_010473	4534447	-1	NC_010473	4534451	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.281e-01	junction_possible_overlap_registers=195	key=NC_010473__4534447__-1__NC_010473__4534447__1__4____200__200__0__0	max_left=198	max_left_minus=198	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=97	max_min_right_minus=97	max_min_right_plus=0	max_pos_hash_score=390	max_right=97	max_right_minus=97	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=1.281e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=28	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=4
JC	542	.	NC_010473	4559139	-1	NC_010473	4559143	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=1.579e-01	junction_possible_overlap_registers=199	key=NC_010473__4559139__-1__NC_010473__4559143__1__0____200__200__0__0	max_left=168	max_left_minus=0	max_left_plus=168	max_min_left=95	max_min_left_minus=0	max_min_left_plus=95	max_min_right=53	max_min_right_minus=0	max_min_right_plus=53	max_pos_hash_score=398	max_right=173	max_right_minus=0	max_right_plus=173	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.16	new_junction_read_count=6	polymorphism_frequency=1.579e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=32	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=32	side_2_redundant=0	total_non_overlap_reads=5
JC	543	.	NC_010473	4572549	-1	NC_010473	4572553	1	0	alignment_overlap=2	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=6.850e-02	junction_possible_overlap_registers=197	key=NC_010473__4572549__-1__NC_010473__4572551__1__2____200__200__0__0	max_left=144	max_left_minus=144	max_left_plus=0	max_min_left=25	max_min_left_minus=25	max_min_left_plus=0	max_min_right=64	max_min_right_minus=64	max_min_right_plus=0	max_pos_hash_score=394	max_right=174	max_right_minus=174	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=6.850e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=2	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.08	side_2_overlap=0	side_2_possible_overlap_registers=197	side_2_read_count=41	side_2_redundant=0	total_non_overlap_reads=3
JC	544	.	NC_010473	4584688	-1	NC_010473	4584692	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=200	flanking_right=200	frequency=1.333e-01	junction_possible_overlap_registers=199	key=NC_010473__4584688__-1__NC_010473__4584692__1__0____200__200__0__0	max_left=153	max_left_minus=79	max_left_plus=153	max_min_left=79	max_min_left_minus=79	max_min_left_plus=78	max_min_right=54	max_min_right_minus=0	max_min_right_plus=54	max_pos_hash_score=398	max_right=124	max_right_minus=124	max_right_plus=118	neg_log10_pos_hash_p_value=6.1	new_junction_coverage=0.10	new_junction_read_count=4	polymorphism_frequency=1.333e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=0	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=199	side_2_read_count=26	side_2_redundant=0	total_non_overlap_reads=4
JC	545	.	NC_010473	4598201	-1	NC_010473	4598205	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=8	flanking_left=200	flanking_right=200	frequency=1	junction_possible_overlap_registers=198	key=NC_010473__4598201__-1__NC_010473__4598204__1__1____200__200__0__0	max_left=169	max_left_minus=63	max_left_plus=169	max_min_left=63	max_min_left_minus=63	max_min_left_plus=58	max_min_right=97	max_min_right_minus=0	max_min_right_plus=97	max_pos_hash_score=396	max_right=184	max_right_minus=145	max_right_plus=184	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.24	new_junction_read_count=9	polymorphism_frequency=8.186e-01	pos_hash_score=9	prediction=consensus	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=9
JC	546	.	NC_010473	4604784	1	NC_010473	4604780	-1	0	alignment_overlap=5	coverage_minus=5	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=3.028e-01	junction_possible_overlap_registers=194	key=NC_010473__4604784__1__NC_010473__4604785__-1__5____200__200__0__0	max_left=159	max_left_minus=159	max_left_plus=151	max_min_left=35	max_min_left_minus=11	max_min_left_plus=35	max_min_right=100	max_min_right_minus=100	max_min_right_plus=97	max_pos_hash_score=388	max_right=170	max_right_minus=170	max_right_plus=167	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.32	new_junction_read_count=12	polymorphism_frequency=3.028e-01	pos_hash_score=12	prediction=polymorphism	reject=INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=27	side_2_redundant=0	total_non_overlap_reads=12
JC	547	.	NC_010473	4640846	-1	NC_010473	4640850	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=NA	junction_possible_overlap_registers=195	key=NC_010473__4640846__-1__NC_010473__4640846__1__4____200__200__1__1	max_left=147	max_left_minus=147	max_left_plus=0	max_min_left=80	max_min_left_minus=80	max_min_left_plus=0	max_min_right=78	max_min_right_minus=78	max_min_right_plus=0	max_pos_hash_score=390	max_right=118	max_right_minus=118	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=NA	pos_hash_score=4	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	548	.	NC_010473	4641821	-1	NC_010473	4641825	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.447e-01	junction_possible_overlap_registers=196	key=NC_010473__4641824__-1__NC_010473__4641825__1__3____200__200__1__0	max_left=153	max_left_minus=153	max_left_plus=0	max_min_left=86	max_min_left_minus=86	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=392	max_right=110	max_right_minus=110	max_right_plus=0	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.08	new_junction_read_count=3	polymorphism_frequency=1.447e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.47	side_2_overlap=3	side_2_possible_overlap_registers=199	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=3
JC	549	.	NC_010473	4651033	-1	NC_010473	4651038	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=7	flanking_left=200	flanking_right=200	frequency=1.976e-01	junction_possible_overlap_registers=198	key=NC_010473__4651033__-1__NC_010473__4651037__1__1____200__200__0__0	max_left=189	max_left_minus=0	max_left_plus=189	max_min_left=99	max_min_left_minus=0	max_min_left_plus=99	max_min_right=78	max_min_right_minus=0	max_min_right_plus=78	max_pos_hash_score=396	max_right=191	max_right_minus=0	max_right_plus=191	neg_log10_pos_hash_p_value=4.6	new_junction_coverage=0.18	new_junction_read_count=7	polymorphism_frequency=1.976e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=1	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=198	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=7
JC	550	.	NC_010473	4653818	-1	NC_010473	4653822	1	0	alignment_overlap=4	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=1.506e-01	junction_possible_overlap_registers=195	key=NC_010473__4653818__-1__NC_010473__4653818__1__4____200__200__0__0	max_left=156	max_left_minus=156	max_left_plus=0	max_min_left=62	max_min_left_minus=62	max_min_left_plus=0	max_min_right=72	max_min_right_minus=72	max_min_right_plus=0	max_pos_hash_score=390	max_right=131	max_right_minus=131	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.13	new_junction_read_count=5	polymorphism_frequency=1.506e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,INDEL_HOMOPOLYMER,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=4	side_1_possible_overlap_registers=199	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.75	side_2_overlap=0	side_2_possible_overlap_registers=195	side_2_read_count=28	side_2_redundant=0	total_non_overlap_reads=4
JC	551	.	NC_010473	4678576	1	NC_010473	4678572	-1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=5	flanking_left=200	flanking_right=200	frequency=2.463e-01	junction_possible_overlap_registers=191	key=NC_010473__4678576__1__NC_010473__4678580__-1__8____200__200__0__0	max_left=181	max_left_minus=181	max_left_plus=172	max_min_left=90	max_min_left_minus=90	max_min_left_plus=80	max_min_right=93	max_min_right_minus=11	max_min_right_plus=93	max_pos_hash_score=382	max_right=120	max_right_minus=102	max_right_plus=120	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.22	new_junction_read_count=8	polymorphism_frequency=2.463e-01	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=8	side_1_possible_overlap_registers=199	side_1_read_count=26	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=191	side_2_read_count=24	side_2_redundant=0	total_non_overlap_reads=7
JC	552	.	NC_010473	4685906	1	NC_010473	4685902	-1	0	alignment_overlap=5	coverage_minus=4	coverage_plus=0	flanking_left=200	flanking_right=200	frequency=9.094e-02	junction_possible_overlap_registers=194	key=NC_010473__4685906__1__NC_010473__4685907__-1__5____200__200__0__0	max_left=121	max_left_minus=121	max_left_plus=0	max_min_left=94	max_min_left_minus=94	max_min_left_plus=0	max_min_right=75	max_min_right_minus=75	max_min_right_plus=0	max_pos_hash_score=388	max_right=150	max_right_minus=150	max_right_plus=0	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=4	polymorphism_frequency=9.094e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF,POLYMORPHIC_INDEL	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=5	side_1_possible_overlap_registers=199	side_1_read_count=41	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.07	side_2_overlap=0	side_2_possible_overlap_registers=194	side_2_read_count=40	side_2_redundant=0	total_non_overlap_reads=4
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